RNA–Protein interactions for RNA: ENST00000559834.1

HDDC3-204, Transcript of HD domain containing 3, humanhuman

TSL 2

Gene HDDC3, Length 1,076 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDDC3-204ENST00000559834 MANEALQ5VSG8 457 aa9.29□□□□□ -0.92
HDDC3-204ENST00000559834 INO80CQ6PI98 192 aaPredicted RBP9.29□□□□□ -0.92
HDDC3-204ENST00000559834 PCSK4Q6UW60 755 aa9.29□□□□□ -0.92
HDDC3-204ENST00000559834 TRIM72Q6ZMU5 477 aa9.29□□□□□ -0.92
HDDC3-204ENST00000559834 MACC1Q6ZN28 852 aa9.29□□□□□ -0.92
HDDC3-204ENST00000559834 CCDC81Q6ZN84 652 aa9.29□□□□□ -0.92
HDDC3-204ENST00000559834 NLRP14Q86W24 1093 aa9.29□□□□□ -0.92
HDDC3-204ENST00000559834 EMC1Q8N766 993 aa9.29□□□□□ -0.92
HDDC3-204ENST00000559834 OR6C4Q8NGE1 309 aa9.29□□□□□ -0.92
HDDC3-204ENST00000559834 ATL2Q8NHH9 583 aa9.29□□□□□ -0.92
HDDC3-204ENST00000559834 HCAR2Q8TDS4 363 aa9.29□□□□□ -0.92
HDDC3-204ENST00000559834 EPS8L1Q8TE68 723 aa9.29□□□□□ -0.92
HDDC3-204ENST00000559834 CCDC3Q9BQI4 270 aa9.29□□□□□ -0.92
HDDC3-204ENST00000559834 NAA15Q9BXJ9 866 aaKnown RBP9.29□□□□□ -0.92
HDDC3-204ENST00000559834 TTYH3Q9C0H2 523 aa9.29□□□□□ -0.92
HDDC3-204ENST00000559834 NDFIP2Q9NV92 336 aa9.29□□□□□ -0.92
HDDC3-204ENST00000559834 DONSONQ9NYP3 566 aa9.29□□□□□ -0.92
HDDC3-204ENST00000559834 DKK3Q9UBP4 350 aa9.29□□□□□ -0.92
HDDC3-204ENST00000559834 GULP1Q9UBP9 304 aa9.29□□□□□ -0.92
HDDC3-204ENST00000559834 GGT7Q9UJ14 662 aa9.29□□□□□ -0.92
HDDC3-204ENST00000559834 ITM2BQ9Y287 266 aa9.29□□□□□ -0.92
HDDC3-204ENST00000559834 SSUH2Q9Y2M2 353 aa9.29□□□□□ -0.92
HDDC3-204ENST00000559834 MFHAS1Q9Y4C4 1052 aa9.29□□□□□ -0.92
HDDC3-204ENST00000559834 ITPR1Q14643 2758 aa9.28□□□□□ -0.92
HDDC3-204ENST00000559834 NBEAQ8NFP9 2946 aa9.28□□□□□ -0.92
HDDC3-204ENST00000559834 FAM170AA1A519 330 aa9.28□□□□□ -0.92
HDDC3-204ENST00000559834 ANKRD62A6NC57 917 aa9.28□□□□□ -0.92
HDDC3-204ENST00000559834 C2CD4BA6NLJ0 364 aa9.28□□□□□ -0.92
HDDC3-204ENST00000559834 CDRT15L2A8MXV6 281 aa9.28□□□□□ -0.92
HDDC3-204ENST00000559834 B8ZZF3 427 aa9.28□□□□□ -0.92
HDDC3-204ENST00000559834 F8VZ95 297 aa9.28□□□□□ -0.92
HDDC3-204ENST00000559834 RASGRP1O95267 797 aa9.28□□□□□ -0.92
HDDC3-204ENST00000559834 IGSF6O95976 241 aa9.28□□□□□ -0.92
HDDC3-204ENST00000559834 CYP1A1P04798 512 aaPredicted RBP9.28□□□□□ -0.92
HDDC3-204ENST00000559834 TPM2P07951 284 aa9.28□□□□□ -0.92
HDDC3-204ENST00000559834 ITGA2BP08514 1039 aa9.28□□□□□ -0.92
HDDC3-204ENST00000559834 KRT3P12035 628 aa9.28□□□□□ -0.92
HDDC3-204ENST00000559834 TIMP2P16035 220 aa9.28□□□□□ -0.92
HDDC3-204ENST00000559834 HK3P52790 923 aa9.28□□□□□ -0.92
HDDC3-204ENST00000559834 YBEYP58557 167 aaPredicted RBP9.28□□□□□ -0.92
HDDC3-204ENST00000559834 RHOAP61586 193 aa9.28□□□□□ -0.92
HDDC3-204ENST00000559834 SKOR1P84550 965 aa9.28□□□□□ -0.92
HDDC3-204ENST00000559834 CDR2Q01850 454 aa9.28□□□□□ -0.92
HDDC3-204ENST00000559834 EIF3IQ13347 325 aaKnown RBP9.28□□□□□ -0.92
HDDC3-204ENST00000559834 LRRC14Q15048 493 aa9.28□□□□□ -0.92
HDDC3-204ENST00000559834 C15orf59Q2T9L4 293 aaPredicted RBP9.28□□□□□ -0.92
HDDC3-204ENST00000559834 KLHL40Q2TBA0 621 aa9.28□□□□□ -0.92
HDDC3-204ENST00000559834 PERM1Q5SV97 790 aa9.28□□□□□ -0.92
HDDC3-204ENST00000559834 TPRG1LQ5T0D9 272 aa9.28□□□□□ -0.92
HDDC3-204ENST00000559834 CRTC1Q6UUV9 634 aa9.28□□□□□ -0.92
HDDC3-204ENST00000559834 LEKR1Q6ZMV7 388 aa9.28□□□□□ -0.92
HDDC3-204ENST00000559834 SLFN11Q7Z7L1 901 aa9.28□□□□□ -0.92
HDDC3-204ENST00000559834 CLEC14AQ86T13 490 aa9.28□□□□□ -0.92
HDDC3-204ENST00000559834 GKN2Q86XP6 184 aa9.28□□□□□ -0.92
HDDC3-204ENST00000559834 SLC35F3Q8IY50 421 aa9.28□□□□□ -0.92
HDDC3-204ENST00000559834 RBFAQ8N0V3 343 aa9.28□□□□□ -0.92
HDDC3-204ENST00000559834 ARL10Q8N8L6 244 aa9.28□□□□□ -0.92
HDDC3-204ENST00000559834 GPT2Q8TD30 523 aa9.28□□□□□ -0.92
HDDC3-204ENST00000559834 CENPIQ92674 756 aaPredicted RBP9.28□□□□□ -0.92
HDDC3-204ENST00000559834 NTAN1Q96AB6 310 aa9.28□□□□□ -0.92
HDDC3-204ENST00000559834 MED8Q96G25 268 aa9.28□□□□□ -0.92
HDDC3-204ENST00000559834 PRR11Q96HE9 360 aaPredicted RBP9.28□□□□□ -0.92
HDDC3-204ENST00000559834 EPAS1Q99814 870 aa9.28□□□□□ -0.92
HDDC3-204ENST00000559834 NCAPGQ9BPX3 1015 aa9.28□□□□□ -0.92
HDDC3-204ENST00000559834 LRRC61Q9BV99 259 aa9.28□□□□□ -0.92
HDDC3-204ENST00000559834 CPEB1Q9BZB8 566 aaKnown RBP9.28□□□□□ -0.92
HDDC3-204ENST00000559834 STRADBQ9C0K7 418 aa9.28□□□□□ -0.92
HDDC3-204ENST00000559834 TCEAL2Q9H3H9 227 aaPredicted RBP9.28□□□□□ -0.92
HDDC3-204ENST00000559834 SYNDIG1Q9H7V2 258 aa9.28□□□□□ -0.92
HDDC3-204ENST00000559834 WDFY3Q8IZQ1 3526 aa9.27□□□□□ -0.92
HDDC3-204ENST00000559834 DOCK4Q8N1I0 1966 aa9.27□□□□□ -0.93
HDDC3-204ENST00000559834 FAM72CH0Y354 149 aa9.27□□□□□ -0.93
HDDC3-204ENST00000559834 NTN3O00634 580 aaPredicted RBP9.27□□□□□ -0.93
HDDC3-204ENST00000559834 PLD2O14939 933 aa9.27□□□□□ -0.93
HDDC3-204ENST00000559834 GFPT2O94808 682 aa9.27□□□□□ -0.93
HDDC3-204ENST00000559834 TMCC1O94876 653 aa9.27□□□□□ -0.93
HDDC3-204ENST00000559834 GJB6O95452 261 aa9.27□□□□□ -0.93
HDDC3-204ENST00000559834 TNFP01375 233 aa9.27□□□□□ -0.93
HDDC3-204ENST00000559834 DESP17661 470 aa9.27□□□□□ -0.93
HDDC3-204ENST00000559834 EEF1GP26641 437 aaKnown RBP9.27□□□□□ -0.93
HDDC3-204ENST00000559834 EPHB2P29323 1055 aa9.27□□□□□ -0.93
HDDC3-204ENST00000559834 IGFALSP35858 605 aa9.27□□□□□ -0.93
HDDC3-204ENST00000559834 NSFP46459 744 aaKnown RBP9.27□□□□□ -0.93
HDDC3-204ENST00000559834 LY6DQ14210 128 aa9.27□□□□□ -0.93
HDDC3-204ENST00000559834 ZSCAN23Q3MJ62 389 aa9.27□□□□□ -0.93
HDDC3-204ENST00000559834 TMEM52BQ4KMG9 183 aa9.27□□□□□ -0.93
HDDC3-204ENST00000559834 HSP90AA4PQ58FG1 418 aa9.27□□□□□ -0.93
HDDC3-204ENST00000559834 TCP11X2Q5H9J9 407 aa9.27□□□□□ -0.93
HDDC3-204ENST00000559834 EFHC2Q5JST6 749 aa9.27□□□□□ -0.93
HDDC3-204ENST00000559834 CFAP58Q5T655 872 aa9.27□□□□□ -0.93
HDDC3-204ENST00000559834 ATXN7L2Q5T6C5 722 aaPredicted RBP9.27□□□□□ -0.93
HDDC3-204ENST00000559834 FAM72AQ5TYM5 149 aa9.27□□□□□ -0.93
HDDC3-204ENST00000559834 FAM72DQ6L9T8 149 aa9.27□□□□□ -0.93
HDDC3-204ENST00000559834 ERAP2Q6P179 960 aa9.27□□□□□ -0.93
HDDC3-204ENST00000559834 ENPP7Q6UWV6 458 aa9.27□□□□□ -0.93
HDDC3-204ENST00000559834 XKR5Q6UX68 686 aa9.27□□□□□ -0.93
HDDC3-204ENST00000559834 RD3Q7Z3Z2 195 aa9.27□□□□□ -0.93
HDDC3-204ENST00000559834 PHLDB2Q86SQ0 1253 aa9.27□□□□□ -0.93
HDDC3-204ENST00000559834 FAM72BQ86X60 149 aa9.27□□□□□ -0.93
HDDC3-204ENST00000559834 HID1Q8IV36 788 aa9.27□□□□□ -0.93
Retrieved 100 of 20,778 RNA–protein pairs in 69 ms