RNA–Protein interactions for RNA: ENST00000559119.1

VPS13C-208, Transcript of vacuolar protein sorting 13 homolog C, humanhuman

TSL 2

Gene VPS13C, Length 738 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13C-208ENST00000559119 SETD9Q8NE22 299 aa4.62□□□□□ -1.67
VPS13C-208ENST00000559119 ZMIZ2Q8NF64 920 aa4.62□□□□□ -1.67
VPS13C-208ENST00000559119 YME1L1Q96TA2 773 aa4.62□□□□□ -1.67
VPS13C-208ENST00000559119 SCRT2Q9NQ03 307 aa4.62□□□□□ -1.67
VPS13C-208ENST00000559119 ANKRD10Q9NXR5 420 aa4.62□□□□□ -1.67
VPS13C-208ENST00000559119 DACT1Q9NYF0 836 aa4.62□□□□□ -1.67
VPS13C-208ENST00000559119 VDAC3Q9Y277 283 aa4.62□□□□□ -1.67
VPS13C-208ENST00000559119 E7EVH7 732 aa4.61□□□□□ -1.67
VPS13C-208ENST00000559119 H0Y3Z8 333 aa4.61□□□□□ -1.67
VPS13C-208ENST00000559119 FGF17O60258 216 aa4.61□□□□□ -1.67
VPS13C-208ENST00000559119 ZG16O60844 167 aa4.61□□□□□ -1.67
VPS13C-208ENST00000559119 TIPRLO75663 272 aa4.61□□□□□ -1.67
VPS13C-208ENST00000559119 KRT38O76015 456 aa4.61□□□□□ -1.67
VPS13C-208ENST00000559119 CLDN14O95500 239 aa4.61□□□□□ -1.67
VPS13C-208ENST00000559119 SERPINC1P01008 464 aa4.61□□□□□ -1.67
VPS13C-208ENST00000559119 LDLRP01130 860 aa4.61□□□□□ -1.67
VPS13C-208ENST00000559119 CSF1P09603 554 aa4.61□□□□□ -1.67
VPS13C-208ENST00000559119 CENPAP49450 140 aa4.61□□□□□ -1.67
VPS13C-208ENST00000559119 SLC18A2Q05940 514 aa4.61□□□□□ -1.67
VPS13C-208ENST00000559119 GALNT1Q10472 559 aaPredicted RBP4.61□□□□□ -1.67
VPS13C-208ENST00000559119 ZBTB17Q13105 803 aa4.61□□□□□ -1.67
VPS13C-208ENST00000559119 TNFAIP1Q13829 316 aa4.61□□□□□ -1.67
VPS13C-208ENST00000559119 PUM3Q15397 648 aaKnown RBP4.61□□□□□ -1.67
VPS13C-208ENST00000559119 XRRA1Q6P2D8 792 aa4.61□□□□□ -1.67
VPS13C-208ENST00000559119 SHFQ7M4L6 423 aa4.61□□□□□ -1.67
VPS13C-208ENST00000559119 SFTPA2Q8IWL1 248 aa4.61□□□□□ -1.67
VPS13C-208ENST00000559119 CTCFLQ8NI51 663 aaPredicted RBP4.61□□□□□ -1.67
VPS13C-208ENST00000559119 USP13Q92995 863 aaPredicted RBP4.61□□□□□ -1.67
VPS13C-208ENST00000559119 OTULINQ96BN8 352 aa4.61□□□□□ -1.67
VPS13C-208ENST00000559119 C3orf30Q96M34 536 aa4.61□□□□□ -1.67
VPS13C-208ENST00000559119 ELAC2Q9BQ52 826 aaKnown RBP4.61□□□□□ -1.67
VPS13C-208ENST00000559119 HERC2P3Q9BVR0 1158 aa4.61□□□□□ -1.67
VPS13C-208ENST00000559119 SPATS2LQ9NUQ6 558 aaKnown RBP4.61□□□□□ -1.67
VPS13C-208ENST00000559119 ZNF224Q9NZL3 707 aa4.61□□□□□ -1.67
VPS13C-208ENST00000559119 SLCO3A1Q9UIG8 710 aa4.61□□□□□ -1.67
VPS13C-208ENST00000559119 CLDN16Q9Y5I7 305 aa4.61□□□□□ -1.67
VPS13C-208ENST00000559119 MMP24Q9Y5R2 645 aa4.61□□□□□ -1.67
VPS13C-208ENST00000559119 HMX3A6NHT5 357 aa4.6□□□□□ -1.67
VPS13C-208ENST00000559119 ACKR2O00590 384 aa4.6□□□□□ -1.67
VPS13C-208ENST00000559119 CFC1BP0CG36 223 aa4.6□□□□□ -1.67
VPS13C-208ENST00000559119 CFC1P0CG37 223 aa4.6□□□□□ -1.67
VPS13C-208ENST00000559119 CETPP11597 493 aa4.6□□□□□ -1.67
VPS13C-208ENST00000559119 ARSFP54793 590 aa4.6□□□□□ -1.67
VPS13C-208ENST00000559119 HDAC4P56524 1084 aa4.6□□□□□ -1.67
VPS13C-208ENST00000559119 ERVK11-1P61568 191 aa4.6□□□□□ -1.67
VPS13C-208ENST00000559119 TNFAIP2Q03169 654 aa4.6□□□□□ -1.67
VPS13C-208ENST00000559119 MARK2Q7KZI7 788 aaKnown RBP4.6□□□□□ -1.67
VPS13C-208ENST00000559119 KLHDC8BQ8IXV7 354 aa4.6□□□□□ -1.67
VPS13C-208ENST00000559119 ARRDC2Q8TBH0 407 aa4.6□□□□□ -1.67
VPS13C-208ENST00000559119 GOLGA1Q92805 767 aa4.6□□□□□ -1.67
VPS13C-208ENST00000559119 RMDN3Q96TC7 470 aa4.6□□□□□ -1.67
VPS13C-208ENST00000559119 CSF3RQ99062 836 aa4.6□□□□□ -1.67
VPS13C-208ENST00000559119 TAF1DQ9H5J8 278 aaPredicted RBP4.6□□□□□ -1.67
VPS13C-208ENST00000559119 ARNT2Q9HBZ2 717 aa4.6□□□□□ -1.67
VPS13C-208ENST00000559119 ENTPD7Q9NQZ7 604 aa4.6□□□□□ -1.67
VPS13C-208ENST00000559119 IFT80Q9P2H3 777 aaPredicted RBP4.6□□□□□ -1.67
VPS13C-208ENST00000559119 SIX4Q9UIU6 781 aa4.6□□□□□ -1.67
VPS13C-208ENST00000559119 CNPY2Q9Y2B0 182 aa4.6□□□□□ -1.67
VPS13C-208ENST00000559119 CPED1A4D0V7 1026 aa4.59□□□□□ -1.67
VPS13C-208ENST00000559119 ERI2A8K979 691 aaKnown RBP4.59□□□□□ -1.67
VPS13C-208ENST00000559119 FAM72CH0Y354 149 aa4.59□□□□□ -1.67
VPS13C-208ENST00000559119 APOHP02749 345 aaPredicted RBP4.59□□□□□ -1.67
VPS13C-208ENST00000559119 LINC00271P0C7V0 271 aa4.59□□□□□ -1.67
VPS13C-208ENST00000559119 TNNT1P13805 278 aa4.59□□□□□ -1.67
VPS13C-208ENST00000559119 MCM2P49736 904 aa4.59□□□□□ -1.67
VPS13C-208ENST00000559119 TAF6P49848 677 aa4.59□□□□□ -1.67
VPS13C-208ENST00000559119 SMAD1Q15797 465 aaKnown RBP4.59□□□□□ -1.67
VPS13C-208ENST00000559119 SYT16Q17RD7 645 aa4.59□□□□□ -1.67
VPS13C-208ENST00000559119 FAM72AQ5TYM5 149 aa4.59□□□□□ -1.67
VPS13C-208ENST00000559119 PLEKHA7Q6IQ23 1121 aa4.59□□□□□ -1.67
VPS13C-208ENST00000559119 FAM72DQ6L9T8 149 aa4.59□□□□□ -1.67
VPS13C-208ENST00000559119 GJB7Q6PEY0 223 aa4.59□□□□□ -1.67
VPS13C-208ENST00000559119 ZC3HC1Q86WB0 502 aaKnown RBP4.59□□□□□ -1.67
VPS13C-208ENST00000559119 FAM72BQ86X60 149 aa4.59□□□□□ -1.67
VPS13C-208ENST00000559119 WDSUB1Q8N9V3 476 aa4.59□□□□□ -1.67
VPS13C-208ENST00000559119 KCNH5Q8NCM2 988 aa4.59□□□□□ -1.67
VPS13C-208ENST00000559119 DNAAF1Q8NEP3 725 aa4.59□□□□□ -1.67
VPS13C-208ENST00000559119 OR6Y1Q8NGX8 325 aa4.59□□□□□ -1.67
VPS13C-208ENST00000559119 FIG4Q92562 907 aa4.59□□□□□ -1.67
VPS13C-208ENST00000559119 KTI12Q96EK9 354 aaPredicted RBP4.59□□□□□ -1.67
VPS13C-208ENST00000559119 NPLQ9BXD5 320 aaPredicted RBP4.59□□□□□ -1.67
VPS13C-208ENST00000559119 CTDSP1Q9GZU7 261 aa4.59□□□□□ -1.67
VPS13C-208ENST00000559119 SLC9A2Q9UBY0 812 aa4.59□□□□□ -1.67
VPS13C-208ENST00000559119 TCF19Q9Y242 345 aa4.59□□□□□ -1.67
VPS13C-208ENST00000559119 A0A0G2JPF8 293 aa4.58□□□□□ -1.68
VPS13C-208ENST00000559119 HNRNPCL3B7ZW38 293 aa4.58□□□□□ -1.68
VPS13C-208ENST00000559119 PPM1GO15355 546 aaPredicted RBP4.58□□□□□ -1.68
VPS13C-208ENST00000559119 HSPA12AO43301 675 aa4.58□□□□□ -1.68
VPS13C-208ENST00000559119 HNRNPCL1O60812 293 aaKnown RBP4.58□□□□□ -1.68
VPS13C-208ENST00000559119 SLC22A3O75751 556 aa4.58□□□□□ -1.68
VPS13C-208ENST00000559119 ADAP00813 363 aa4.58□□□□□ -1.68
VPS13C-208ENST00000559119 HNRNPCL4P0DMR1 293 aa4.58□□□□□ -1.68
VPS13C-208ENST00000559119 MCM3P25205 808 aa4.58□□□□□ -1.68
VPS13C-208ENST00000559119 TTKP33981 857 aa4.58□□□□□ -1.68
VPS13C-208ENST00000559119 CLCN3P51790 818 aa4.58□□□□□ -1.68
VPS13C-208ENST00000559119 ATP12AP54707 1039 aa4.58□□□□□ -1.68
VPS13C-208ENST00000559119 ICA1Q05084 483 aa4.58□□□□□ -1.68
VPS13C-208ENST00000559119 CHAF1AQ13111 956 aaPredicted RBP4.58□□□□□ -1.68
VPS13C-208ENST00000559119 SLC26A9Q7LBE3 791 aa4.58□□□□□ -1.68
VPS13C-208ENST00000559119 KBTBD3Q8NAB2 608 aa4.58□□□□□ -1.68
Retrieved 100 of 20,778 RNA–protein pairs in 51.6 ms