RNA–Protein interactions for RNA: ENST00000543359.5

TNFRSF1A-215, Transcript of TNF receptor superfamily member 1A, humanhuman

TSL 3

Gene TNFRSF1A, Length 627 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TNFRSF1A-215ENST00000543359 LRRK1Q38SD2 2015 aa13.27□□□□□ -0.28
TNFRSF1A-215ENST00000543359 TSPAN11A1L157 253 aa13.27□□□□□ -0.29
TNFRSF1A-215ENST00000543359 TMEM8BA6NDV4 472 aa13.27□□□□□ -0.29
TNFRSF1A-215ENST00000543359 GOLGA8CPA6NN73 597 aa13.27□□□□□ -0.29
TNFRSF1A-215ENST00000543359 TRIM38O00635 465 aa13.27□□□□□ -0.29
TNFRSF1A-215ENST00000543359 ENC1O14682 589 aa13.27□□□□□ -0.29
TNFRSF1A-215ENST00000543359 DESP17661 470 aa13.27□□□□□ -0.29
TNFRSF1A-215ENST00000543359 PTMSP20962 102 aa13.27□□□□□ -0.29
TNFRSF1A-215ENST00000543359 CASP14P31944 242 aa13.27□□□□□ -0.29
TNFRSF1A-215ENST00000543359 RGRP47804 291 aa13.27□□□□□ -0.29
TNFRSF1A-215ENST00000543359 ZNF135P52742 658 aaPredicted RBP13.27□□□□□ -0.29
TNFRSF1A-215ENST00000543359 RHOAP61586 193 aa13.27□□□□□ -0.29
TNFRSF1A-215ENST00000543359 DNAJC3Q13217 504 aa13.27□□□□□ -0.29
TNFRSF1A-215ENST00000543359 CAMK2BQ13554 666 aa13.27□□□□□ -0.29
TNFRSF1A-215ENST00000543359 ACAP1Q15027 740 aa13.27□□□□□ -0.29
TNFRSF1A-215ENST00000543359 PROX2Q3B8N5 592 aa13.27□□□□□ -0.29
TNFRSF1A-215ENST00000543359 INAVAQ3KP66 663 aa13.27□□□□□ -0.29
TNFRSF1A-215ENST00000543359 BOLA3Q53S33 107 aa13.27□□□□□ -0.29
TNFRSF1A-215ENST00000543359 PPP6R3Q5H9R7 873 aaPredicted RBP13.27□□□□□ -0.29
TNFRSF1A-215ENST00000543359 LRRC73Q5JTD7 316 aa13.27□□□□□ -0.29
TNFRSF1A-215ENST00000543359 KYAT3Q6YP21 454 aaKnown RBP13.27□□□□□ -0.29
TNFRSF1A-215ENST00000543359 KDM7AQ6ZMT4 941 aa13.27□□□□□ -0.29
TNFRSF1A-215ENST00000543359 Q6ZSR6 202 aa13.27□□□□□ -0.29
TNFRSF1A-215ENST00000543359 POLNQ7Z5Q5 900 aa13.27□□□□□ -0.29
TNFRSF1A-215ENST00000543359 TTC7BQ86TV6 843 aa13.27□□□□□ -0.29
TNFRSF1A-215ENST00000543359 ZSCAN30Q86W11 494 aa13.27□□□□□ -0.29
TNFRSF1A-215ENST00000543359 ZNF354CQ86Y25 554 aa13.27□□□□□ -0.29
TNFRSF1A-215ENST00000543359 NIPA2Q8N8Q9 360 aa13.27□□□□□ -0.29
TNFRSF1A-215ENST00000543359 FAM174AQ8TBP5 190 aa13.27□□□□□ -0.29
TNFRSF1A-215ENST00000543359 CENPTQ96BT3 561 aa13.27□□□□□ -0.29
TNFRSF1A-215ENST00000543359 IQCDQ96DY2 449 aa13.27□□□□□ -0.29
TNFRSF1A-215ENST00000543359 BTBD6Q96KE9 485 aa13.27□□□□□ -0.29
TNFRSF1A-215ENST00000543359 EXOC2Q96KP1 924 aa13.27□□□□□ -0.29
TNFRSF1A-215ENST00000543359 CNDP2Q96KP4 475 aaKnown RBP13.27□□□□□ -0.29
TNFRSF1A-215ENST00000543359 NCAPGQ9BPX3 1015 aa13.27□□□□□ -0.29
TNFRSF1A-215ENST00000543359 XPO4Q9C0E2 1151 aaKnown RBP13.27□□□□□ -0.29
TNFRSF1A-215ENST00000543359 ETNK2Q9NVF9 386 aa13.27□□□□□ -0.29
TNFRSF1A-215ENST00000543359 UCKL1Q9NWZ5 548 aa13.27□□□□□ -0.29
TNFRSF1A-215ENST00000543359 KLF15Q9UIH9 416 aa13.27□□□□□ -0.29
TNFRSF1A-215ENST00000543359 LUC7L2Q9Y383 392 aaKnown RBP13.27□□□□□ -0.29
TNFRSF1A-215ENST00000543359 PCDHGA1Q9Y5H4 931 aa13.27□□□□□ -0.29
TNFRSF1A-215ENST00000543359 ARHGAP42A6NI28 874 aa13.26□□□□□ -0.29
TNFRSF1A-215ENST00000543359 A6NNZ2 444 aa13.26□□□□□ -0.29
TNFRSF1A-215ENST00000543359 GOLGA6L19H0YKK7 550 aa13.26□□□□□ -0.29
TNFRSF1A-215ENST00000543359 LOC400499M0QZD8 3231 aa13.26□□□□□ -0.29
TNFRSF1A-215ENST00000543359 MUSKO15146 869 aa13.26□□□□□ -0.29
TNFRSF1A-215ENST00000543359 SDC3O75056 442 aa13.26□□□□□ -0.29
TNFRSF1A-215ENST00000543359 LDOC1O95751 146 aaPredicted RBP13.26□□□□□ -0.29
TNFRSF1A-215ENST00000543359 PEX11BO96011 259 aa13.26□□□□□ -0.29
TNFRSF1A-215ENST00000543359 RARAP10276 462 aa13.26□□□□□ -0.29
TNFRSF1A-215ENST00000543359 DGKAP23743 735 aa13.26□□□□□ -0.29
TNFRSF1A-215ENST00000543359 IL4RP24394 825 aa13.26□□□□□ -0.29
TNFRSF1A-215ENST00000543359 CSNK1DP48730 415 aa13.26□□□□□ -0.29
TNFRSF1A-215ENST00000543359 ACADVLP49748 655 aa13.26□□□□□ -0.29
TNFRSF1A-215ENST00000543359 PFN3P60673 137 aa13.26□□□□□ -0.29
TNFRSF1A-215ENST00000543359 SLC25A11Q02978 314 aaKnown RBP13.26□□□□□ -0.29
TNFRSF1A-215ENST00000543359 FZD2Q14332 565 aa13.26□□□□□ -0.29
TNFRSF1A-215ENST00000543359 PIGHQ14442 188 aaPredicted RBP13.26□□□□□ -0.29
TNFRSF1A-215ENST00000543359 ASTE1Q2TB18 679 aaPredicted RBP13.26□□□□□ -0.29
TNFRSF1A-215ENST00000543359 TMEM52BQ4KMG9 183 aa13.26□□□□□ -0.29
TNFRSF1A-215ENST00000543359 TDRD12Q587J7 1177 aaKnown RBP13.26□□□□□ -0.29
TNFRSF1A-215ENST00000543359 ZSWIM9Q86XI8 627 aa13.26□□□□□ -0.29
TNFRSF1A-215ENST00000543359 TSEN2Q8NCE0 465 aaKnown RBP13.26□□□□□ -0.29
TNFRSF1A-215ENST00000543359 FAM71BQ8TC56 605 aa13.26□□□□□ -0.29
TNFRSF1A-215ENST00000543359 IFT43Q96FT9 208 aa13.26□□□□□ -0.29
TNFRSF1A-215ENST00000543359 HNRNPUL1Q9BUJ2 856 aaKnown RBP eCLIP13.26□□□□□ -0.29
TNFRSF1A-215ENST00000543359 SUV39H2Q9H5I1 410 aa13.26□□□□□ -0.29
TNFRSF1A-215ENST00000543359 ASXL3Q9C0F0 2248 aa13.25□□□□□ -0.29
TNFRSF1A-215ENST00000543359 SPTY2D1-AS1A0A0U1RR47 76 aa13.25□□□□□ -0.29
TNFRSF1A-215ENST00000543359 DAPK3O43293 454 aa13.25□□□□□ -0.29
TNFRSF1A-215ENST00000543359 SIGLEC6O43699 453 aa13.25□□□□□ -0.29
TNFRSF1A-215ENST00000543359 MMP20O60882 483 aa13.25□□□□□ -0.29
TNFRSF1A-215ENST00000543359 PIAS2O75928 621 aa13.25□□□□□ -0.29
TNFRSF1A-215ENST00000543359 PIGNO95427 931 aa13.25□□□□□ -0.29
TNFRSF1A-215ENST00000543359 C1SP09871 688 aa13.25□□□□□ -0.29
TNFRSF1A-215ENST00000543359 AMPD1P23109 780 aa13.25□□□□□ -0.29
TNFRSF1A-215ENST00000543359 RAD51Q06609 339 aa13.25□□□□□ -0.29
TNFRSF1A-215ENST00000543359 IL10RBQ08334 325 aa13.25□□□□□ -0.29
TNFRSF1A-215ENST00000543359 NSUN2Q08J23 767 aaKnown RBP eCLIP13.25□□□□□ -0.29
TNFRSF1A-215ENST00000543359 ZNF211Q13398 564 aaPredicted RBP13.25□□□□□ -0.29
TNFRSF1A-215ENST00000543359 SMTNL2Q2TAL5 461 aa13.25□□□□□ -0.29
TNFRSF1A-215ENST00000543359 SKOR2Q2VWA4 1001 aaPredicted RBP13.25□□□□□ -0.29
TNFRSF1A-215ENST00000543359 ALKBH5Q6P6C2 394 aaKnown RBP13.25□□□□□ -0.29
TNFRSF1A-215ENST00000543359 DHRS13Q6UX07 377 aa13.25□□□□□ -0.29
TNFRSF1A-215ENST00000543359 SRLQ86TD4 932 aa13.25□□□□□ -0.29
TNFRSF1A-215ENST00000543359 DCP2Q8IU60 420 aaKnown RBP13.25□□□□□ -0.29
TNFRSF1A-215ENST00000543359 CAMK1DQ8IU85 385 aa13.25□□□□□ -0.29
TNFRSF1A-215ENST00000543359 DENND6BQ8NEG7 585 aa13.25□□□□□ -0.29
TNFRSF1A-215ENST00000543359 TEKT4Q8WW24 435 aa13.25□□□□□ -0.29
TNFRSF1A-215ENST00000543359 CSPG4P5Q96PW8 444 aa13.25□□□□□ -0.29
TNFRSF1A-215ENST00000543359 NUP85Q9BW27 656 aa13.25□□□□□ -0.29
TNFRSF1A-215ENST00000543359 CALN1Q9BXU9 219 aa13.25□□□□□ -0.29
TNFRSF1A-215ENST00000543359 IPO11Q9UI26 975 aaKnown RBP13.25□□□□□ -0.29
TNFRSF1A-215ENST00000543359 PNMA8BQ9ULN7 279 aaPredicted RBP13.25□□□□□ -0.29
TNFRSF1A-215ENST00000543359 ANKRD36A6QL64 1941 aa13.25□□□□□ -0.29
TNFRSF1A-215ENST00000543359 LY6G6EA0A0G2JKS1 128 aa13.24□□□□□ -0.29
TNFRSF1A-215ENST00000543359 FAM149AA5PLN7 773 aa13.24□□□□□ -0.29
TNFRSF1A-215ENST00000543359 SRRM3A6NNA2 597 aaPredicted RBP13.24□□□□□ -0.29
TNFRSF1A-215ENST00000543359 DFFAO00273 331 aa13.24□□□□□ -0.29
TNFRSF1A-215ENST00000543359 NEMP1O14524 444 aa13.24□□□□□ -0.29
Retrieved 100 of 20,778 RNA–protein pairs in 16.4 ms