RNA–Protein interactions for RNA: ENST00000540931.1

CLSTN3-210, Transcript of calsyntenin 3, humanhuman

TSL 2

Gene CLSTN3, Length 910 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-210ENST00000540931 FBXL19Q6PCT2 694 aa17.71■□□□□ 0.43
CLSTN3-210ENST00000540931 NCEH1Q6PIU2 408 aa17.71■□□□□ 0.43
CLSTN3-210ENST00000540931 ERN2Q76MJ5 926 aaKnown RBP17.71■□□□□ 0.43
CLSTN3-210ENST00000540931 MAML2Q8IZL2 1156 aaPredicted RBP17.71■□□□□ 0.43
CLSTN3-210ENST00000540931 CCDC89Q8N998 374 aa17.71■□□□□ 0.43
CLSTN3-210ENST00000540931 CCHCR1Q8TD31 782 aa17.71■□□□□ 0.43
CLSTN3-210ENST00000540931 RTP4Q96DX8 246 aa17.71■□□□□ 0.43
CLSTN3-210ENST00000540931 SPATA13Q96N96 652 aa17.71■□□□□ 0.43
CLSTN3-210ENST00000540931 SEMA3CQ99985 751 aa17.71■□□□□ 0.43
CLSTN3-210ENST00000540931 ADGRE3Q9BY15 652 aa17.71■□□□□ 0.43
CLSTN3-210ENST00000540931 FBXL12Q9NXK8 326 aa17.71■□□□□ 0.43
CLSTN3-210ENST00000540931 EIF2AK3Q9NZJ5 1116 aaKnown RBP17.71■□□□□ 0.43
CLSTN3-210ENST00000540931 EVLQ9UI08 416 aaPredicted RBP17.71■□□□□ 0.43
CLSTN3-210ENST00000540931 TTLL3Q9Y4R7 772 aa17.71■□□□□ 0.43
CLSTN3-210ENST00000540931 AP1G1O43747 822 aa17.7■□□□□ 0.42
CLSTN3-210ENST00000540931 NDUFS2O75306 463 aa17.7■□□□□ 0.42
CLSTN3-210ENST00000540931 GAS8O95995 478 aa17.7■□□□□ 0.42
CLSTN3-210ENST00000540931 EPOP01588 193 aa17.7■□□□□ 0.42
CLSTN3-210ENST00000540931 VAV1P15498 845 aa17.7■□□□□ 0.42
CLSTN3-210ENST00000540931 CD6P30203 668 aa17.7■□□□□ 0.42
CLSTN3-210ENST00000540931 P2RY2P41231 377 aa17.7■□□□□ 0.42
CLSTN3-210ENST00000540931 TPMTP51580 245 aa17.7■□□□□ 0.42
CLSTN3-210ENST00000540931 CKAP4Q07065 602 aaKnown RBP17.7■□□□□ 0.42
CLSTN3-210ENST00000540931 MPP3Q13368 585 aa17.7■□□□□ 0.42
CLSTN3-210ENST00000540931 OASLQ15646 514 aaKnown RBP17.7■□□□□ 0.42
CLSTN3-210ENST00000540931 CYP1B1Q16678 543 aa17.7■□□□□ 0.42
CLSTN3-210ENST00000540931 ATXN7L2Q5T6C5 722 aaPredicted RBP17.7■□□□□ 0.42
CLSTN3-210ENST00000540931 ERAP2Q6P179 960 aa17.7■□□□□ 0.42
CLSTN3-210ENST00000540931 ARHGEF18Q6ZSZ5 1173 aa17.7■□□□□ 0.42
CLSTN3-210ENST00000540931 GSTA5Q7RTV2 222 aa17.7■□□□□ 0.42
CLSTN3-210ENST00000540931 HDDC3Q8N4P3 179 aa17.7■□□□□ 0.42
CLSTN3-210ENST00000540931 NETO2Q8NC67 525 aa17.7■□□□□ 0.42
CLSTN3-210ENST00000540931 CADM4Q8NFZ8 388 aa17.7■□□□□ 0.42
CLSTN3-210ENST00000540931 GRIN3AQ8TCU5 1115 aa17.7■□□□□ 0.42
CLSTN3-210ENST00000540931 COG1Q8WTW3 980 aa17.7■□□□□ 0.42
CLSTN3-210ENST00000540931 GAB3Q8WWW8 586 aa17.7■□□□□ 0.42
CLSTN3-210ENST00000540931 FOXJ1Q92949 421 aa17.7■□□□□ 0.42
CLSTN3-210ENST00000540931 MAGOHBQ96A72 148 aaKnown RBP17.7■□□□□ 0.42
CLSTN3-210ENST00000540931 FAM131CQ96AQ9 280 aa17.7■□□□□ 0.42
CLSTN3-210ENST00000540931 AGAP3Q96P47 875 aa17.7■□□□□ 0.42
CLSTN3-210ENST00000540931 FCRL5Q96RD9 977 aa17.7■□□□□ 0.42
CLSTN3-210ENST00000540931 HERPUD2Q9BSE4 406 aa17.7■□□□□ 0.42
CLSTN3-210ENST00000540931 GLOD4Q9HC38 313 aa17.7■□□□□ 0.42
CLSTN3-210ENST00000540931 KCTD5Q9NXV2 234 aa17.7■□□□□ 0.42
CLSTN3-210ENST00000540931 ACTL7AQ9Y615 435 aa17.7■□□□□ 0.42
CLSTN3-210ENST00000540931 SHROOM3Q8TF72 1996 aa17.7■□□□□ 0.42
CLSTN3-210ENST00000540931 TSPAN11A1L157 253 aa17.69■□□□□ 0.42
CLSTN3-210ENST00000540931 ANTXRLA6NF34 631 aa17.69■□□□□ 0.42
CLSTN3-210ENST00000540931 ERI2A8K979 691 aaKnown RBP17.69■□□□□ 0.42
CLSTN3-210ENST00000540931 MID1O15344 667 aa17.69■□□□□ 0.42
CLSTN3-210ENST00000540931 MAP3K13O43283 966 aa17.69■□□□□ 0.42
CLSTN3-210ENST00000540931 HTRA2O43464 458 aaPredicted RBP17.69■□□□□ 0.42
CLSTN3-210ENST00000540931 RNASEH2AO75792 299 aaKnown RBP17.69■□□□□ 0.42
CLSTN3-210ENST00000540931 RPP40O75818 363 aaKnown RBP17.69■□□□□ 0.42
CLSTN3-210ENST00000540931 RHOBTB1O94844 696 aa17.69■□□□□ 0.42
CLSTN3-210ENST00000540931 HLA-DQB2P05538 268 aa17.69■□□□□ 0.42
CLSTN3-210ENST00000540931 UGT2B4P06133 528 aa17.69■□□□□ 0.42
CLSTN3-210ENST00000540931 FDFT1P37268 417 aa17.69■□□□□ 0.42
CLSTN3-210ENST00000540931 GEMP55040 296 aa17.69■□□□□ 0.42
CLSTN3-210ENST00000540931 WASHC5Q12768 1159 aa17.69■□□□□ 0.42
CLSTN3-210ENST00000540931 ZBTB17Q13105 803 aa17.69■□□□□ 0.42
CLSTN3-210ENST00000540931 PARP6Q2NL67 630 aa17.69■□□□□ 0.42
CLSTN3-210ENST00000540931 ANKRD20A2Q5SQ80 823 aa17.69■□□□□ 0.42
CLSTN3-210ENST00000540931 ARMC12Q5T9G4 340 aa17.69■□□□□ 0.42
CLSTN3-210ENST00000540931 ANKRD20A1Q5TYW2 823 aa17.69■□□□□ 0.42
CLSTN3-210ENST00000540931 ANKRD20A3Q5VUR7 823 aa17.69■□□□□ 0.42
CLSTN3-210ENST00000540931 CHST14Q8NCH0 376 aa17.69■□□□□ 0.42
CLSTN3-210ENST00000540931 IMP4Q96G21 291 aaKnown RBP17.69■□□□□ 0.42
CLSTN3-210ENST00000540931 GBA3Q9H227 469 aa17.69■□□□□ 0.42
CLSTN3-210ENST00000540931 MTG2Q9H4K7 406 aa17.69■□□□□ 0.42
CLSTN3-210ENST00000540931 USP29Q9HBJ7 922 aa17.69■□□□□ 0.42
CLSTN3-210ENST00000540931 NOD2Q9HC29 1040 aa17.69■□□□□ 0.42
CLSTN3-210ENST00000540931 PREBQ9HCU5 417 aa17.69■□□□□ 0.42
CLSTN3-210ENST00000540931 PAK5Q9P286 719 aa17.69■□□□□ 0.42
CLSTN3-210ENST00000540931 FAM153AQ9UHL3 310 aa17.69■□□□□ 0.42
CLSTN3-210ENST00000540931 RSPH14Q9UHP6 348 aa17.69■□□□□ 0.42
CLSTN3-210ENST00000540931 PHTF1Q9UMS5 762 aa17.69■□□□□ 0.42
CLSTN3-210ENST00000540931 CACNA1IQ9P0X4 2223 aa17.69■□□□□ 0.42
CLSTN3-210ENST00000540931 TCRBV7S2A1N4TA0A589 114 aa17.68■□□□□ 0.42
CLSTN3-210ENST00000540931 C16orf96A6NNT2 1141 aa17.68■□□□□ 0.42
CLSTN3-210ENST00000540931 AP3B1O00203 1094 aa17.68■□□□□ 0.42
CLSTN3-210ENST00000540931 NDC80O14777 642 aa17.68■□□□□ 0.42
CLSTN3-210ENST00000540931 TSPAN6O43657 245 aa17.68■□□□□ 0.42
CLSTN3-210ENST00000540931 PHF2O75151 1096 aa17.68■□□□□ 0.42
CLSTN3-210ENST00000540931 CTSLP07711 333 aa17.68■□□□□ 0.42
CLSTN3-210ENST00000540931 FNTBP49356 437 aa17.68■□□□□ 0.42
CLSTN3-210ENST00000540931 SIX1Q15475 284 aaPredicted RBP17.68■□□□□ 0.42
CLSTN3-210ENST00000540931 ELF2Q15723 593 aa17.68■□□□□ 0.42
CLSTN3-210ENST00000540931 ADAT2Q7Z6V5 191 aaKnown RBP17.68■□□□□ 0.42
CLSTN3-210ENST00000540931 CREG2Q8IUH2 290 aa17.68■□□□□ 0.42
CLSTN3-210ENST00000540931 RAVER1Q8IY67 606 aaKnown RBP17.68■□□□□ 0.42
CLSTN3-210ENST00000540931 ZNF567Q8N184 647 aa17.68■□□□□ 0.42
CLSTN3-210ENST00000540931 C17orf53Q8N3J3 647 aaPredicted RBP17.68■□□□□ 0.42
CLSTN3-210ENST00000540931 PGBD5Q8N414 524 aa17.68■□□□□ 0.42
CLSTN3-210ENST00000540931 CNTD1Q8N815 330 aa17.68■□□□□ 0.42
CLSTN3-210ENST00000540931 C1orf54Q8WWF1 131 aa17.68■□□□□ 0.42
CLSTN3-210ENST00000540931 ECHDC3Q96DC8 303 aa17.68■□□□□ 0.42
CLSTN3-210ENST00000540931 EXOC2Q96KP1 924 aa17.68■□□□□ 0.42
CLSTN3-210ENST00000540931 KLHL32Q96NJ5 620 aa17.68■□□□□ 0.42
CLSTN3-210ENST00000540931 TMEM121Q9BTD3 319 aa17.68■□□□□ 0.42
Retrieved 100 of 20,778 RNA–protein pairs in 31 ms