RNA–Protein interactions for RNA: ENST00000533806.5

VPS28-216, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 3

Gene VPS28, Length 650 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-216ENST00000533806 FGL2Q14314 439 aa13.12□□□□□ -0.31
VPS28-216ENST00000533806 IHHQ14623 411 aa13.12□□□□□ -0.31
VPS28-216ENST00000533806 IFI16Q16666 785 aaKnown RBP13.12□□□□□ -0.31
VPS28-216ENST00000533806 MARC1Q5VT66 337 aa13.12□□□□□ -0.31
VPS28-216ENST00000533806 ALG1LQ6GMV1 187 aa13.12□□□□□ -0.31
VPS28-216ENST00000533806 NAPEPLDQ6IQ20 393 aa13.12□□□□□ -0.31
VPS28-216ENST00000533806 DAAM2Q86T65 1068 aa13.12□□□□□ -0.31
VPS28-216ENST00000533806 ZSWIM9Q86XI8 627 aa13.12□□□□□ -0.31
VPS28-216ENST00000533806 CAMK1DQ8IU85 385 aa13.12□□□□□ -0.31
VPS28-216ENST00000533806 TMEM145Q8NBT3 493 aa13.12□□□□□ -0.31
VPS28-216ENST00000533806 OR2I1PQ8NGU4 316 aa13.12□□□□□ -0.31
VPS28-216ENST00000533806 ASB12Q8WXK4 309 aa13.12□□□□□ -0.31
VPS28-216ENST00000533806 KRT35Q92764 455 aa13.12□□□□□ -0.31
VPS28-216ENST00000533806 HDAC11Q96DB2 347 aa13.12□□□□□ -0.31
VPS28-216ENST00000533806 OLFM3Q96PB7 478 aa13.12□□□□□ -0.31
VPS28-216ENST00000533806 DESI2Q9BSY9 194 aa13.12□□□□□ -0.31
VPS28-216ENST00000533806 C1QTNF2Q9BXJ5 285 aa13.12□□□□□ -0.31
VPS28-216ENST00000533806 GGT7Q9UJ14 662 aa13.12□□□□□ -0.31
VPS28-216ENST00000533806 PCDHA3Q9Y5H8 950 aa13.12□□□□□ -0.31
VPS28-216ENST00000533806 ADGRG1Q9Y653 693 aa13.12□□□□□ -0.31
VPS28-216ENST00000533806 RALGAPA1Q6GYQ0 2036 aa13.12□□□□□ -0.31
VPS28-216ENST00000533806 TTC24A2A3L6 582 aaPredicted RBP13.11□□□□□ -0.31
VPS28-216ENST00000533806 GRID2IPA4D2P6 1211 aa13.11□□□□□ -0.31
VPS28-216ENST00000533806 UPK3BL1B0FP48 263 aa13.11□□□□□ -0.31
VPS28-216ENST00000533806 UPK3BL2E5RIL1 263 aa13.11□□□□□ -0.31
VPS28-216ENST00000533806 HTRA2O43464 458 aaPredicted RBP13.11□□□□□ -0.31
VPS28-216ENST00000533806 MAP3K6O95382 1288 aa13.11□□□□□ -0.31
VPS28-216ENST00000533806 ITIH2P19823 946 aa13.11□□□□□ -0.31
VPS28-216ENST00000533806 MX2P20592 715 aa13.11□□□□□ -0.31
VPS28-216ENST00000533806 MAT2AP31153 395 aaKnown RBP13.11□□□□□ -0.31
VPS28-216ENST00000533806 CTNNA1P35221 906 aaKnown RBP13.11□□□□□ -0.31
VPS28-216ENST00000533806 CTSKP43235 329 aa13.11□□□□□ -0.31
VPS28-216ENST00000533806 MAPK8P45983 427 aa13.11□□□□□ -0.31
VPS28-216ENST00000533806 SCNN1BP51168 640 aa13.11□□□□□ -0.31
VPS28-216ENST00000533806 AP1S1P61966 158 aa13.11□□□□□ -0.31
VPS28-216ENST00000533806 UGP2Q16851 508 aa13.11□□□□□ -0.31
VPS28-216ENST00000533806 KIF19Q2TAC6 998 aa13.11□□□□□ -0.31
VPS28-216ENST00000533806 RALGPS1Q5JS13 557 aa13.11□□□□□ -0.31
VPS28-216ENST00000533806 SEL1L3Q68CR1 1132 aa13.11□□□□□ -0.31
VPS28-216ENST00000533806 KIAA1161Q6NSJ0 714 aa13.11□□□□□ -0.31
VPS28-216ENST00000533806 BRAT1Q6PJG6 821 aa13.11□□□□□ -0.31
VPS28-216ENST00000533806 LAYNQ6UX15 382 aa13.11□□□□□ -0.31
VPS28-216ENST00000533806 SPOCD1Q6ZMY3 1216 aa13.11□□□□□ -0.31
VPS28-216ENST00000533806 DBX2Q6ZNG2 339 aa13.11□□□□□ -0.31
VPS28-216ENST00000533806 TTC7BQ86TV6 843 aa13.11□□□□□ -0.31
VPS28-216ENST00000533806 PRPF39Q86UA1 669 aaKnown RBP13.11□□□□□ -0.31
VPS28-216ENST00000533806 IQCHQ86VS3 1027 aa13.11□□□□□ -0.31
VPS28-216ENST00000533806 ZSCAN30Q86W11 494 aa13.11□□□□□ -0.31
VPS28-216ENST00000533806 RCOR2Q8IZ40 523 aa13.11□□□□□ -0.31
VPS28-216ENST00000533806 MINDY1Q8N5J2 469 aa13.11□□□□□ -0.31
VPS28-216ENST00000533806 EXD1Q8NHP7 514 aa13.11□□□□□ -0.31
VPS28-216ENST00000533806 FEM1CQ96JP0 617 aa13.11□□□□□ -0.31
VPS28-216ENST00000533806 SERAC1Q96JX3 654 aa13.11□□□□□ -0.31
VPS28-216ENST00000533806 NUDCD1Q96RS6 583 aa13.11□□□□□ -0.31
VPS28-216ENST00000533806 ATP13A3Q9H7F0 1226 aa13.11□□□□□ -0.31
VPS28-216ENST00000533806 GRPEL1Q9HAV7 217 aa13.11□□□□□ -0.31
VPS28-216ENST00000533806 NOD2Q9HC29 1040 aa13.11□□□□□ -0.31
VPS28-216ENST00000533806 TRIM10Q9UDY6 481 aa13.11□□□□□ -0.31
VPS28-216ENST00000533806 AMACRQ9UHK6 382 aa13.11□□□□□ -0.31
VPS28-216ENST00000533806 ITM2BQ9Y287 266 aa13.11□□□□□ -0.31
VPS28-216ENST00000533806 ANKRD6Q9Y2G4 727 aa13.11□□□□□ -0.31
VPS28-216ENST00000533806 SNX11Q9Y5W9 270 aa13.11□□□□□ -0.31
VPS28-216ENST00000533806 PI4KAP42356 2102 aa13.1□□□□□ -0.31
VPS28-216ENST00000533806 KNL1Q8NG31 2342 aa13.1□□□□□ -0.31
VPS28-216ENST00000533806 hCG_1818297A0A087WSY0 165 aa13.1□□□□□ -0.31
VPS28-216ENST00000533806 PRAMEF26H0Y7S4 382 aa13.1□□□□□ -0.31
VPS28-216ENST00000533806 APOL1O14791 398 aa13.1□□□□□ -0.31
VPS28-216ENST00000533806 PCDH8O95206 1070 aa13.1□□□□□ -0.31
VPS28-216ENST00000533806 ZRANB2O95218 330 aaKnown RBP eCLIP13.1□□□□□ -0.312e-7■■□□□ 13.6
VPS28-216ENST00000533806 KRT10P13645 584 aa13.1□□□□□ -0.31
VPS28-216ENST00000533806 TNNT1P13805 278 aa13.1□□□□□ -0.31
VPS28-216ENST00000533806 CD59P13987 128 aa13.1□□□□□ -0.31
VPS28-216ENST00000533806 ZFXP17010 805 aaPredicted RBP13.1□□□□□ -0.31
VPS28-216ENST00000533806 CTNNA2P26232 953 aa13.1□□□□□ -0.31
VPS28-216ENST00000533806 CD38P28907 300 aa13.1□□□□□ -0.31
VPS28-216ENST00000533806 MMP13P45452 471 aa13.1□□□□□ -0.31
VPS28-216ENST00000533806 RPS21P63220 83 aaKnown RBP13.1□□□□□ -0.31
VPS28-216ENST00000533806 PPIDQ08752 370 aaKnown RBP13.1□□□□□ -0.31
VPS28-216ENST00000533806 KIF5AQ12840 1032 aa13.1□□□□□ -0.31
VPS28-216ENST00000533806 ZNF235Q14590 738 aa13.1□□□□□ -0.31
VPS28-216ENST00000533806 TEAD4Q15561 434 aa13.1□□□□□ -0.31
VPS28-216ENST00000533806 ZNF423Q2M1K9 1284 aa13.1□□□□□ -0.31
VPS28-216ENST00000533806 HLA-BQ31612 363 aa13.1□□□□□ -0.31
VPS28-216ENST00000533806 TMEM52BQ4KMG9 183 aa13.1□□□□□ -0.31
VPS28-216ENST00000533806 SETMARQ53H47 684 aaPredicted RBP13.1□□□□□ -0.31
VPS28-216ENST00000533806 ZFYVE27Q5T4F4 411 aa13.1□□□□□ -0.31
VPS28-216ENST00000533806 TIGD7Q6NT04 549 aaPredicted RBP13.1□□□□□ -0.31
VPS28-216ENST00000533806 IL27RAQ6UWB1 636 aa13.1□□□□□ -0.31
VPS28-216ENST00000533806 NPNTQ6UXI9 565 aa13.1□□□□□ -0.31
VPS28-216ENST00000533806 PIP4P1Q86T03 277 aa13.1□□□□□ -0.31
VPS28-216ENST00000533806 NT5DC3Q86UY8 548 aa13.1□□□□□ -0.31
VPS28-216ENST00000533806 LRRC8AQ8IWT6 810 aa13.1□□□□□ -0.31
VPS28-216ENST00000533806 MFSD2AQ8NA29 543 aa13.1□□□□□ -0.31
VPS28-216ENST00000533806 KIAA1524Q8TCG1 905 aa13.1□□□□□ -0.31
VPS28-216ENST00000533806 LRRN4Q8WUT4 740 aa13.1□□□□□ -0.31
VPS28-216ENST00000533806 LENG8Q96PV6 779 aaPredicted RBP13.1□□□□□ -0.31
VPS28-216ENST00000533806 LGMNQ99538 433 aa13.1□□□□□ -0.31
VPS28-216ENST00000533806 KLF6Q99612 283 aaPredicted RBP13.1□□□□□ -0.31
VPS28-216ENST00000533806 GTPBP2Q9BX10 602 aaKnown RBP13.1□□□□□ -0.31
VPS28-216ENST00000533806 SLC17A9Q9BYT1 436 aa13.1□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 20.4 ms