RNA–Protein interactions for RNA: ENST00000508319.1

HMGCS1-205, Transcript of 3-hydroxy-3-methylglutaryl-CoA synthase 1, humanhuman

TSL 3

Gene HMGCS1, Length 591 nt, Biotype retained intron, Subcellular localisation Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGCS1-205ENST00000508319 MAMLD1Q13495 774 aa13.17□□□□□ -0.3
HMGCS1-205ENST00000508319 ANO6Q4KMQ2 910 aa13.17□□□□□ -0.3
HMGCS1-205ENST00000508319 CDCP2Q5VXM1 449 aa13.17□□□□□ -0.3
HMGCS1-205ENST00000508319 E4F1Q66K89 784 aaPredicted RBP13.17□□□□□ -0.3
HMGCS1-205ENST00000508319 GDPD4Q6W3E5 623 aa13.17□□□□□ -0.3
HMGCS1-205ENST00000508319 FAM181AQ8N9Y4 354 aa13.17□□□□□ -0.3
HMGCS1-205ENST00000508319 SPDYE1Q8NFV5 336 aaPredicted RBP13.17□□□□□ -0.3
HMGCS1-205ENST00000508319 VCPIP1Q96JH7 1222 aa13.17□□□□□ -0.3
HMGCS1-205ENST00000508319 EXOC2Q96KP1 924 aa13.17□□□□□ -0.3
HMGCS1-205ENST00000508319 PEBP4Q96S96 227 aa13.17□□□□□ -0.3
HMGCS1-205ENST00000508319 BPIFA3Q9BQP9 254 aa13.17□□□□□ -0.3
HMGCS1-205ENST00000508319 LRRC19Q9H756 370 aa13.17□□□□□ -0.3
HMGCS1-205ENST00000508319 PDFQ9HBH1 243 aa13.17□□□□□ -0.3
HMGCS1-205ENST00000508319 GPATCH2LQ9NWQ4 482 aa13.17□□□□□ -0.3
HMGCS1-205ENST00000508319 DKK3Q9UBP4 350 aa13.17□□□□□ -0.3
HMGCS1-205ENST00000508319 AP4E1Q9UPM8 1137 aa13.17□□□□□ -0.3
HMGCS1-205ENST00000508319 RP1P56715 2156 aa13.17□□□□□ -0.3
HMGCS1-205ENST00000508319 TSPAN11A1L157 253 aa13.16□□□□□ -0.3
HMGCS1-205ENST00000508319 NEMP2A6NFY4 417 aa13.16□□□□□ -0.3
HMGCS1-205ENST00000508319 LRRC53A6NM62 1247 aa13.16□□□□□ -0.3
HMGCS1-205ENST00000508319 TMCO5BA8MYB1 307 aa13.16□□□□□ -0.3
HMGCS1-205ENST00000508319 H3BM21 787 aa13.16□□□□□ -0.3
HMGCS1-205ENST00000508319 INSIG1O15503 277 aa13.16□□□□□ -0.3
HMGCS1-205ENST00000508319 MT-CO3P00414 261 aa13.16□□□□□ -0.3
HMGCS1-205ENST00000508319 TIMP2P16035 220 aa13.16□□□□□ -0.3
HMGCS1-205ENST00000508319 ITIH2P19823 946 aa13.16□□□□□ -0.3
HMGCS1-205ENST00000508319 PSMA2P25787 234 aa13.16□□□□□ -0.3
HMGCS1-205ENST00000508319 HTR7P34969 479 aa13.16□□□□□ -0.3
HMGCS1-205ENST00000508319 TPI1P60174 286 aa13.16□□□□□ -0.3
HMGCS1-205ENST00000508319 E2F1Q01094 437 aa13.16□□□□□ -0.3
HMGCS1-205ENST00000508319 SEMG2Q02383 582 aa13.16□□□□□ -0.3
HMGCS1-205ENST00000508319 RAD51Q06609 339 aa13.16□□□□□ -0.3
HMGCS1-205ENST00000508319 CYTH1Q15438 398 aa13.16□□□□□ -0.3
HMGCS1-205ENST00000508319 CA9Q16790 459 aa13.16□□□□□ -0.3
HMGCS1-205ENST00000508319 PLEKHA7Q6IQ23 1121 aa13.16□□□□□ -0.3
HMGCS1-205ENST00000508319 TTC7BQ86TV6 843 aa13.16□□□□□ -0.3
HMGCS1-205ENST00000508319 DNAAF5Q86Y56 855 aa13.16□□□□□ -0.3
HMGCS1-205ENST00000508319 ARFGAP1Q8N6T3 406 aa13.16□□□□□ -0.3
HMGCS1-205ENST00000508319 CRELD1Q96HD1 420 aa13.16□□□□□ -0.3
HMGCS1-205ENST00000508319 CELF6Q96J87 481 aaKnown RBP13.16□□□□□ -0.3
HMGCS1-205ENST00000508319 DCBLD2Q96PD2 775 aa13.16□□□□□ -0.3
HMGCS1-205ENST00000508319 DUSP23Q9BVJ7 150 aa13.16□□□□□ -0.3
HMGCS1-205ENST00000508319 CPEB1Q9BZB8 566 aaKnown RBP13.16□□□□□ -0.3
HMGCS1-205ENST00000508319 TRIM7Q9C029 511 aa13.16□□□□□ -0.3
HMGCS1-205ENST00000508319 PNMA8BQ9ULN7 279 aaPredicted RBP13.16□□□□□ -0.3
HMGCS1-205ENST00000508319 PCDHB1Q9Y5F3 818 aa13.16□□□□□ -0.3
HMGCS1-205ENST00000508319 AK5Q9Y6K8 562 aa13.16□□□□□ -0.3
HMGCS1-205ENST00000508319 KALRNO60229 2985 aa13.15□□□□□ -0.3
HMGCS1-205ENST00000508319 J3KR12 359 aa13.15□□□□□ -0.3
HMGCS1-205ENST00000508319 AQP9O43315 295 aa13.15□□□□□ -0.3
HMGCS1-205ENST00000508319 OPA1O60313 960 aa13.15□□□□□ -0.3
HMGCS1-205ENST00000508319 BRINP1O60477 761 aa13.15□□□□□ -0.3
HMGCS1-205ENST00000508319 PRAMEF11O60813 436 aa13.15□□□□□ -0.3
HMGCS1-205ENST00000508319 MMP20O60882 483 aa13.15□□□□□ -0.3
HMGCS1-205ENST00000508319 TM7SF2O76062 418 aa13.15□□□□□ -0.3
HMGCS1-205ENST00000508319 PIGNO95427 931 aa13.15□□□□□ -0.3
HMGCS1-205ENST00000508319 GP1BAP07359 652 aa13.15□□□□□ -0.3
HMGCS1-205ENST00000508319 JUNDP17535 347 aa13.15□□□□□ -0.3
HMGCS1-205ENST00000508319 TNFAIP3P21580 790 aa13.15□□□□□ -0.3
HMGCS1-205ENST00000508319 PPP1R2P3Q6NXS1 205 aa13.15□□□□□ -0.3
HMGCS1-205ENST00000508319 ZCCHC8Q6NZY4 707 aaKnown RBP13.15□□□□□ -0.3
HMGCS1-205ENST00000508319 CYP4V2Q6ZWL3 525 aaPredicted RBP13.15□□□□□ -0.3
HMGCS1-205ENST00000508319 VPS36Q86VN1 386 aa13.15□□□□□ -0.3
HMGCS1-205ENST00000508319 RBFAQ8N0V3 343 aa13.15□□□□□ -0.3
HMGCS1-205ENST00000508319 TP53I13Q8NBR0 393 aaPredicted RBP13.15□□□□□ -0.3
HMGCS1-205ENST00000508319 SNIP1Q8TAD8 396 aaKnown RBP13.15□□□□□ -0.3
HMGCS1-205ENST00000508319 CXorf40AQ8TE69 158 aa13.15□□□□□ -0.3
HMGCS1-205ENST00000508319 WRAP53Q9BUR4 548 aaKnown RBP13.15□□□□□ -0.3
HMGCS1-205ENST00000508319 SNRNP25Q9BV90 132 aaKnown RBP13.15□□□□□ -0.3
HMGCS1-205ENST00000508319 NAT10Q9H0A0 1025 aaKnown RBP13.15□□□□□ -0.3
HMGCS1-205ENST00000508319 TCEAL2Q9H3H9 227 aaPredicted RBP13.15□□□□□ -0.3
HMGCS1-205ENST00000508319 USP29Q9HBJ7 922 aa13.15□□□□□ -0.3
HMGCS1-205ENST00000508319 MBNL1Q9NR56 388 aaKnown RBP13.15□□□□□ -0.3
HMGCS1-205ENST00000508319 PARVAQ9NVD7 372 aa13.15□□□□□ -0.3
HMGCS1-205ENST00000508319 UBA2Q9UBT2 640 aaPredicted RBP13.15□□□□□ -0.3
HMGCS1-205ENST00000508319 IPO11Q9UI26 975 aaKnown RBP13.15□□□□□ -0.3
HMGCS1-205ENST00000508319 CSNK1G3Q9Y6M4 447 aa13.15□□□□□ -0.3
HMGCS1-205ENST00000508319 MGAQ8IWI9 3026 aa13.15□□□□□ -0.3
HMGCS1-205ENST00000508319 TMEM191CA6NGB0 347 aa13.14□□□□□ -0.31
HMGCS1-205ENST00000508319 EIF3CLB5ME19 914 aaKnown RBP13.14□□□□□ -0.31
HMGCS1-205ENST00000508319 DESP17661 470 aa13.14□□□□□ -0.31
HMGCS1-205ENST00000508319 ITPKBP27987 946 aa13.14□□□□□ -0.31
HMGCS1-205ENST00000508319 EIF2S3P41091 472 aaKnown RBP13.14□□□□□ -0.31
HMGCS1-205ENST00000508319 ABCG1P45844 678 aa13.14□□□□□ -0.31
HMGCS1-205ENST00000508319 RGRP47804 291 aa13.14□□□□□ -0.31
HMGCS1-205ENST00000508319 NDST2P52849 883 aa13.14□□□□□ -0.31
HMGCS1-205ENST00000508319 IRF4Q15306 451 aa13.14□□□□□ -0.31
HMGCS1-205ENST00000508319 KLHL40Q2TBA0 621 aa13.14□□□□□ -0.31
HMGCS1-205ENST00000508319 ERMARDQ5T6L9 678 aa13.14□□□□□ -0.31
HMGCS1-205ENST00000508319 AFMIDQ63HM1 303 aa13.14□□□□□ -0.31
HMGCS1-205ENST00000508319 MACC1Q6ZN28 852 aa13.14□□□□□ -0.31
HMGCS1-205ENST00000508319 ZNF571Q7Z3V5 609 aaPredicted RBP13.14□□□□□ -0.31
HMGCS1-205ENST00000508319 ARHGAP12Q8IWW6 846 aa13.14□□□□□ -0.31
HMGCS1-205ENST00000508319 NPWQ8N729 165 aa13.14□□□□□ -0.31
HMGCS1-205ENST00000508319 IFI44Q8TCB0 444 aa13.14□□□□□ -0.31
HMGCS1-205ENST00000508319 LMX1AQ8TE12 382 aa13.14□□□□□ -0.31
HMGCS1-205ENST00000508319 FNIP1Q8TF40 1166 aa13.14□□□□□ -0.31
HMGCS1-205ENST00000508319 KCTD15Q96SI1 283 aaPredicted RBP13.14□□□□□ -0.31
HMGCS1-205ENST00000508319 EIF3CQ99613 913 aaKnown RBP13.14□□□□□ -0.31
HMGCS1-205ENST00000508319 NCAPGQ9BPX3 1015 aa13.14□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 26.2 ms