RNA–Protein interactions for RNA: ENST00000487284.2

CUX1-209, Transcript of cut like homeobox 1, humanhuman

TSL 2

Gene CUX1, Length 1,566 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-209ENST00000487284 PDGFRLQ15198 375 aa14.36□□□□□ -0.11
CUX1-209ENST00000487284 FSCBQ5H9T9 825 aa14.36□□□□□ -0.11
CUX1-209ENST00000487284 ARMC3Q5W041 872 aa14.36□□□□□ -0.11
CUX1-209ENST00000487284 IL31Q6EBC2 164 aa14.36□□□□□ -0.11
CUX1-209ENST00000487284 MFN1Q8IWA4 741 aa14.36□□□□□ -0.11
CUX1-209ENST00000487284 FSD1LQ9BXM9 530 aa14.36□□□□□ -0.11
CUX1-209ENST00000487284 ATP13A1Q9HD20 1204 aa14.36□□□□□ -0.11
CUX1-209ENST00000487284 INTS9Q9NV88 658 aaKnown RBP14.36□□□□□ -0.11
CUX1-209ENST00000487284 FAM169AQ9Y6X4 670 aa14.36□□□□□ -0.11
CUX1-209ENST00000487284 TICRRQ7Z2Z1 1910 aa14.36□□□□□ -0.11
CUX1-209ENST00000487284 MYO10Q9HD67 2058 aa14.36□□□□□ -0.11
CUX1-209ENST00000487284 ZCWPW2A0A1B0GU75 182 aa14.35□□□□□ -0.11
CUX1-209ENST00000487284 A0A1W2PPM1 405 aa14.35□□□□□ -0.11
CUX1-209ENST00000487284 PRPF4O43172 522 aaKnown RBP eCLIP14.35□□□□□ -0.11
CUX1-209ENST00000487284 MGAT5Q09328 741 aa14.35□□□□□ -0.11
CUX1-209ENST00000487284 MPP2Q14168 576 aa14.35□□□□□ -0.11
CUX1-209ENST00000487284 ZNF235Q14590 738 aa14.35□□□□□ -0.11
CUX1-209ENST00000487284 IHHQ14623 411 aa14.35□□□□□ -0.11
CUX1-209ENST00000487284 RFTN1Q14699 578 aaPredicted RBP14.35□□□□□ -0.11
CUX1-209ENST00000487284 SLC14A2Q15849 920 aa14.35□□□□□ -0.11
CUX1-209ENST00000487284 ANKRD20A4Q4UJ75 823 aa14.35□□□□□ -0.11
CUX1-209ENST00000487284 UNC5BQ8IZJ1 945 aa14.35□□□□□ -0.11
CUX1-209ENST00000487284 SERBP1Q8NC51 408 aaKnown RBP eCLIP14.35□□□□□ -0.11
CUX1-209ENST00000487284 PTCD2Q8WV60 388 aaKnown RBP14.35□□□□□ -0.11
CUX1-209ENST00000487284 ATP2A3Q93084 1043 aa14.35□□□□□ -0.11
CUX1-209ENST00000487284 ZNF669Q96BR6 464 aaPredicted RBP14.35□□□□□ -0.11
CUX1-209ENST00000487284 CERS2Q96G23 380 aa14.35□□□□□ -0.11
CUX1-209ENST00000487284 FCRL3Q96P31 734 aaPredicted RBP14.35□□□□□ -0.11
CUX1-209ENST00000487284 SMC6Q96SB8 1091 aa14.35□□□□□ -0.11
CUX1-209ENST00000487284 TRMT61BQ9BVS5 477 aaKnown RBP14.35□□□□□ -0.11
CUX1-209ENST00000487284 KIFC1Q9BW19 673 aa14.35□□□□□ -0.11
CUX1-209ENST00000487284 POLR1EQ9GZS1 481 aaKnown RBP14.35□□□□□ -0.11
CUX1-209ENST00000487284 CCDC134Q9H6E4 229 aa14.35□□□□□ -0.11
CUX1-209ENST00000487284 ECT2Q9H8V3 914 aa14.35□□□□□ -0.11
CUX1-209ENST00000487284 HAUS2Q9NVX0 235 aa14.35□□□□□ -0.11
CUX1-209ENST00000487284 UBA2Q9UBT2 640 aaPredicted RBP14.35□□□□□ -0.11
CUX1-209ENST00000487284 LIMD1Q9UGP4 676 aa14.35□□□□□ -0.11
CUX1-209ENST00000487284 SEPT3Q9UH03 358 aa14.35□□□□□ -0.11
CUX1-209ENST00000487284 MUSKO15146 869 aa14.34□□□□□ -0.11
CUX1-209ENST00000487284 ATP9BO43861 1147 aa14.34□□□□□ -0.11
CUX1-209ENST00000487284 UGT1A9O60656 530 aa14.34□□□□□ -0.11
CUX1-209ENST00000487284 KRT37O76014 449 aa14.34□□□□□ -0.11
CUX1-209ENST00000487284 ADH1CP00326 375 aa14.34□□□□□ -0.11
CUX1-209ENST00000487284 ADH5P11766 374 aa14.34□□□□□ -0.11
CUX1-209ENST00000487284 TPH1P17752 444 aa14.34□□□□□ -0.11
CUX1-209ENST00000487284 CD86P42081 329 aa14.34□□□□□ -0.11
CUX1-209ENST00000487284 SERPINB9P50453 376 aa14.34□□□□□ -0.11
CUX1-209ENST00000487284 ITKQ08881 620 aa14.34□□□□□ -0.11
CUX1-209ENST00000487284 AAK1Q2M2I8 961 aa14.34□□□□□ -0.11
CUX1-209ENST00000487284 PCID2Q5JVF3 399 aa14.34□□□□□ -0.11
CUX1-209ENST00000487284 RNF219Q5W0B1 726 aaPredicted RBP14.34□□□□□ -0.11
CUX1-209ENST00000487284 LEKR1Q6ZMV7 388 aa14.34□□□□□ -0.11
CUX1-209ENST00000487284 CNPY4Q8N129 248 aa14.34□□□□□ -0.11
CUX1-209ENST00000487284 PLCD3Q8N3E9 789 aa14.34□□□□□ -0.11
CUX1-209ENST00000487284 BBS5Q8N3I7 341 aa14.34□□□□□ -0.11
CUX1-209ENST00000487284 NAT16Q8N8M0 369 aa14.34□□□□□ -0.11
CUX1-209ENST00000487284 TTC8Q8TAM2 541 aa14.34□□□□□ -0.11
CUX1-209ENST00000487284 CDKL2Q92772 493 aa14.34□□□□□ -0.11
CUX1-209ENST00000487284 PSKH2Q96QS6 385 aa14.34□□□□□ -0.11
CUX1-209ENST00000487284 MGME1Q9BQP7 344 aa14.34□□□□□ -0.11
CUX1-209ENST00000487284 SPON2Q9BUD6 331 aa14.34□□□□□ -0.11
CUX1-209ENST00000487284 EPN3Q9H201 632 aa14.34□□□□□ -0.11
CUX1-209ENST00000487284 UGT1A7Q9HAW7 530 aa14.34□□□□□ -0.11
CUX1-209ENST00000487284 UGT1A10Q9HAW8 530 aa14.34□□□□□ -0.11
CUX1-209ENST00000487284 UGT1A8Q9HAW9 530 aa14.34□□□□□ -0.11
CUX1-209ENST00000487284 KCNK12Q9HB15 430 aa14.34□□□□□ -0.11
CUX1-209ENST00000487284 MRM3Q9HC36 420 aaKnown RBP14.34□□□□□ -0.11
CUX1-209ENST00000487284 KCNK9Q9NPC2 374 aa14.34□□□□□ -0.11
CUX1-209ENST00000487284 GTSE1Q9NYZ3 720 aa14.34□□□□□ -0.11
CUX1-209ENST00000487284 SMG5Q9UPR3 1016 aaKnown RBP14.34□□□□□ -0.11
CUX1-209ENST00000487284 KIAA1549LQ6ZVL6 1849 aa14.34□□□□□ -0.11
CUX1-209ENST00000487284 FAM47DPA6NHR8 397 aa14.34□□□□□ -0.11
CUX1-209ENST00000487284 ARNTLO00327 626 aa14.34□□□□□ -0.11
CUX1-209ENST00000487284 HOXC11O43248 304 aaPredicted RBP14.34□□□□□ -0.11
CUX1-209ENST00000487284 TYROBPO43914 113 aa14.34□□□□□ -0.11
CUX1-209ENST00000487284 SNRPAP09012 282 aaKnown RBP14.34□□□□□ -0.11
CUX1-209ENST00000487284 GLDCP23378 1020 aa14.34□□□□□ -0.11
CUX1-209ENST00000487284 CNTFP26441 200 aa14.34□□□□□ -0.11
CUX1-209ENST00000487284 MZF1P28698 734 aaPredicted RBP14.34□□□□□ -0.11
CUX1-209ENST00000487284 HLA-FP30511 346 aa14.34□□□□□ -0.11
CUX1-209ENST00000487284 CD70P32970 193 aa14.34□□□□□ -0.11
CUX1-209ENST00000487284 CSKP41240 450 aa14.34□□□□□ -0.11
CUX1-209ENST00000487284 PPARDQ03181 441 aa14.34□□□□□ -0.11
CUX1-209ENST00000487284 LMAN2Q12907 356 aa14.34□□□□□ -0.11
CUX1-209ENST00000487284 RUNX3Q13761 415 aa14.34□□□□□ -0.11
CUX1-209ENST00000487284 GAB4Q2WGN9 574 aa14.34□□□□□ -0.11
CUX1-209ENST00000487284 PUS10Q3MIT2 529 aaKnown RBP14.34□□□□□ -0.11
CUX1-209ENST00000487284 LGSNQ5TDP6 509 aa14.34□□□□□ -0.11
CUX1-209ENST00000487284 ASTLQ6HA08 431 aaPredicted RBP14.34□□□□□ -0.11
CUX1-209ENST00000487284 CES3Q6UWW8 571 aa14.34□□□□□ -0.11
CUX1-209ENST00000487284 C4orf33Q8N1A6 199 aa14.34□□□□□ -0.11
CUX1-209ENST00000487284 FIBINQ8TAL6 211 aa14.34□□□□□ -0.11
CUX1-209ENST00000487284 ALKBH8Q96BT7 664 aaKnown RBP14.34□□□□□ -0.11
CUX1-209ENST00000487284 MTBPQ96DY7 904 aa14.34□□□□□ -0.11
CUX1-209ENST00000487284 SGSM3Q96HU1 749 aa14.34□□□□□ -0.11
CUX1-209ENST00000487284 SEMA3CQ99985 751 aa14.34□□□□□ -0.11
CUX1-209ENST00000487284 MUC3BQ9H195 1237 aa14.34□□□□□ -0.11
CUX1-209ENST00000487284 BRD9Q9H8M2 597 aa14.34□□□□□ -0.11
CUX1-209ENST00000487284 PRKAG3Q9UGI9 489 aa14.34□□□□□ -0.11
CUX1-209ENST00000487284 FAM50BQ9Y247 325 aa14.34□□□□□ -0.11
Retrieved 100 of 20,778 RNA–protein pairs in 40.3 ms