RNA–Protein interactions for RNA: ENST00000638959.1

LMBR1-222, Transcript of limb development membrane protein 1, human

TSL 5 BASIC

Gene LMBR1, Length 93 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

Download Table

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
LMBR1-222	ENST00000638959	GPATCH1	Q9BRR8	931 aa	Known RBP	0.7	□□□□□ -2.3
LMBR1-222	ENST00000638959	RTBDN	Q9BSG5	229 aa	Predicted RBP	0.7	□□□□□ -2.3
LMBR1-222	ENST00000638959	SLC25A18	Q9H1K4	315 aa		0.7	□□□□□ -2.3
LMBR1-222	ENST00000638959	KAT14	Q9H8E8	782 aa		0.7	□□□□□ -2.3
LMBR1-222	ENST00000638959	C2orf42	Q9NWW7	574 aa		0.7	□□□□□ -2.3
LMBR1-222	ENST00000638959	MAP3K20	Q9NYL2	800 aa	Known RBP	0.7	□□□□□ -2.3
LMBR1-222	ENST00000638959	OR6C3	Q9NZP0	311 aa		0.7	□□□□□ -2.3
LMBR1-222	ENST00000638959	ZNF212	Q9UDV6	495 aa		0.7	□□□□□ -2.3
LMBR1-222	ENST00000638959	AFF4	Q9UHB7	1163 aa	Known RBP	0.7	□□□□□ -2.3
LMBR1-222	ENST00000638959	CAPN11	Q9UMQ6	739 aa		0.7	□□□□□ -2.3
LMBR1-222	ENST00000638959	ASTN2	O75129	1339 aa	Predicted RBP	0.69	□□□□□ -2.3
LMBR1-222	ENST00000638959	TCP11X1	B4DZS4	312 aa		0.69	□□□□□ -2.3
LMBR1-222	ENST00000638959	RNMT	O43148	476 aa	Known RBP	0.69	□□□□□ -2.3
LMBR1-222	ENST00000638959	MOCS3	O95396	460 aa		0.69	□□□□□ -2.3
LMBR1-222	ENST00000638959	KRT6A	P02538	564 aa		0.69	□□□□□ -2.3
LMBR1-222	ENST00000638959	KRT6B	P04259	564 aa		0.69	□□□□□ -2.3
LMBR1-222	ENST00000638959	IGKV3-11	P04433	115 aa		0.69	□□□□□ -2.3
LMBR1-222	ENST00000638959	TRIM49	P0CI25	452 aa		0.69	□□□□□ -2.3
LMBR1-222	ENST00000638959	TRIM49C	P0CI26	452 aa		0.69	□□□□□ -2.3
LMBR1-222	ENST00000638959	HARS	P12081	509 aa	Known RBP	0.69	□□□□□ -2.3
LMBR1-222	ENST00000638959	UBA1	P22314	1058 aa	Known RBP	0.69	□□□□□ -2.3
LMBR1-222	ENST00000638959	PRPH2	P23942	346 aa		0.69	□□□□□ -2.3
LMBR1-222	ENST00000638959	PRKCH	P24723	683 aa		0.69	□□□□□ -2.3
LMBR1-222	ENST00000638959	HTR1B	P28222	390 aa		0.69	□□□□□ -2.3
LMBR1-222	ENST00000638959	ATIC	P31939	592 aa		0.69	□□□□□ -2.3
LMBR1-222	ENST00000638959	KRT6C	P48668	564 aa		0.69	□□□□□ -2.3
LMBR1-222	ENST00000638959	POU5F1	Q01860	360 aa	Known RBP	0.69	□□□□□ -2.3
LMBR1-222	ENST00000638959	SIRPB2	Q5JXA9	342 aa		0.69	□□□□□ -2.3
LMBR1-222	ENST00000638959	SLC30A9	Q6PML9	568 aa		0.69	□□□□□ -2.3
LMBR1-222	ENST00000638959	CCDC129	Q6ZRS4	1044 aa		0.69	□□□□□ -2.3
LMBR1-222	ENST00000638959	ANKS1B	Q7Z6G8	1248 aa		0.69	□□□□□ -2.3
LMBR1-222	ENST00000638959	CCDC105	Q8IYK2	499 aa		0.69	□□□□□ -2.3
LMBR1-222	ENST00000638959	CCDC185	Q8N715	623 aa		0.69	□□□□□ -2.3
LMBR1-222	ENST00000638959	NMD3	Q96D46	503 aa	Known RBP	0.69	□□□□□ -2.3
LMBR1-222	ENST00000638959	MSTO1	Q9BUK6	570 aa		0.69	□□□□□ -2.3
LMBR1-222	ENST00000638959	HERC5	Q9UII4	1024 aa	Known RBP	0.69	□□□□□ -2.3
LMBR1-222	ENST00000638959	ZNF256	Q9Y2P7	627 aa	Predicted RBP	0.69	□□□□□ -2.3
LMBR1-222	ENST00000638959	WBP11	Q9Y2W2	641 aa	Known RBP	0.69	□□□□□ -2.3
LMBR1-222	ENST00000638959	PYGO1	Q9Y3Y4	419 aa		0.69	□□□□□ -2.3
LMBR1-222	ENST00000638959	TNKS	O95271	1327 aa		0.68	□□□□□ -2.3
LMBR1-222	ENST00000638959	TDRD15	B5MCY1	1934 aa	Known RBP	0.68	□□□□□ -2.3
LMBR1-222	ENST00000638959	IGLV7-46	A0A075B6I9	117 aa		0.68	□□□□□ -2.3
LMBR1-222	ENST00000638959	C11orf97	A0A1B0GVM6	126 aa	Predicted RBP	0.68	□□□□□ -2.3
LMBR1-222	ENST00000638959	DDTL	A6NHG4	134 aa	Predicted RBP	0.68	□□□□□ -2.3
LMBR1-222	ENST00000638959	C3orf70	A6NLC5	250 aa	Predicted RBP	0.68	□□□□□ -2.3
LMBR1-222	ENST00000638959	PHOX2A	O14813	284 aa		0.68	□□□□□ -2.3
LMBR1-222	ENST00000638959	FOXH1	O75593	365 aa		0.68	□□□□□ -2.3
LMBR1-222	ENST00000638959	TFRC	P02786	760 aa	Known RBP	0.68	□□□□□ -2.3
LMBR1-222	ENST00000638959	MGMT	P16455	207 aa		0.68	□□□□□ -2.3
LMBR1-222	ENST00000638959	IGFBP2	P18065	325 aa		0.68	□□□□□ -2.3
LMBR1-222	ENST00000638959	NCL	P19338	710 aa	Known RBP	0.68	□□□□□ -2.3
LMBR1-222	ENST00000638959	ATRX	P46100	2492 aa		0.68	□□□□□ -2.3
LMBR1-222	ENST00000638959	BMX	P51813	675 aa		0.68	□□□□□ -2.3
LMBR1-222	ENST00000638959	TAS2R50	P59544	299 aa		0.68	□□□□□ -2.3
LMBR1-222	ENST00000638959	ITK	Q08881	620 aa		0.68	□□□□□ -2.3
LMBR1-222	ENST00000638959	MPEG1	Q2M385	716 aa		0.68	□□□□□ -2.3
LMBR1-222	ENST00000638959	VWA5B1	Q5TIE3	1220 aa		0.68	□□□□□ -2.3
LMBR1-222	ENST00000638959	SEL1L3	Q68CR1	1132 aa		0.68	□□□□□ -2.3
LMBR1-222	ENST00000638959	GPRIN3	Q6ZVF9	776 aa		0.68	□□□□□ -2.3
LMBR1-222	ENST00000638959	UNC13D	Q70J99	1090 aa		0.68	□□□□□ -2.3
LMBR1-222	ENST00000638959	RTN4RL2	Q86UN3	420 aa		0.68	□□□□□ -2.3
LMBR1-222	ENST00000638959	JAZF1	Q86VZ6	243 aa		0.68	□□□□□ -2.3
LMBR1-222	ENST00000638959	KMT5C	Q86Y97	462 aa		0.68	□□□□□ -2.3
LMBR1-222	ENST00000638959	FAM110D	Q8TAY7	271 aa	Predicted RBP	0.68	□□□□□ -2.3
LMBR1-222	ENST00000638959	ZNF721	Q8TF20	911 aa		0.68	□□□□□ -2.3
LMBR1-222	ENST00000638959	TBC1D22A	Q8WUA7	517 aa		0.68	□□□□□ -2.3
LMBR1-222	ENST00000638959	MTMR8	Q96EF0	704 aa		0.68	□□□□□ -2.3
LMBR1-222	ENST00000638959	C1GALT1C1	Q96EU7	318 aa		0.68	□□□□□ -2.3
LMBR1-222	ENST00000638959	CNOT6L	Q96LI5	555 aa	Known RBP	0.68	□□□□□ -2.3
LMBR1-222	ENST00000638959	SDHC	Q99643	169 aa	Predicted RBP	0.68	□□□□□ -2.3
LMBR1-222	ENST00000638959	SOST	Q9BQB4	213 aa		0.68	□□□□□ -2.3
LMBR1-222	ENST00000638959	FGFBP2	Q9BYJ0	223 aa		0.68	□□□□□ -2.3
LMBR1-222	ENST00000638959	BTBD1	Q9H0C5	482 aa		0.68	□□□□□ -2.3
LMBR1-222	ENST00000638959	CCDC8	Q9H0W5	538 aa	Predicted RBP	0.68	□□□□□ -2.3
LMBR1-222	ENST00000638959	TFB2M	Q9H5Q4	396 aa	Known RBP	0.68	□□□□□ -2.3
LMBR1-222	ENST00000638959	ATP6V0A4	Q9HBG4	840 aa		0.68	□□□□□ -2.3
LMBR1-222	ENST00000638959	AS3MT	Q9HBK9	375 aa		0.68	□□□□□ -2.3
LMBR1-222	ENST00000638959	HEYL	Q9NQ87	328 aa	Predicted RBP	0.68	□□□□□ -2.3
LMBR1-222	ENST00000638959	TBC1D23	Q9NUY8	699 aa		0.68	□□□□□ -2.3
LMBR1-222	ENST00000638959	TMOD4	Q9NZQ9	345 aa		0.68	□□□□□ -2.3
LMBR1-222	ENST00000638959	THEG	Q9P2T0	379 aa		0.68	□□□□□ -2.3
LMBR1-222	ENST00000638959	EPHA6	Q9UF33	1036 aa		0.68	□□□□□ -2.3
LMBR1-222	ENST00000638959	USP19	O94966	1318 aa		0.67	□□□□□ -2.3
LMBR1-222	ENST00000638959	C1orf226	A1L170	272 aa		0.67	□□□□□ -2.3
LMBR1-222	ENST00000638959	TMEM178B	H3BS89	294 aa		0.67	□□□□□ -2.3
LMBR1-222	ENST00000638959	NPC1	O15118	1278 aa		0.67	□□□□□ -2.3
LMBR1-222	ENST00000638959	RFPL2	O75678	378 aa		0.67	□□□□□ -2.3
LMBR1-222	ENST00000638959	PEPD	P12955	493 aa		0.67	□□□□□ -2.3
LMBR1-222	ENST00000638959	CEACAM1	P13688	526 aa		0.67	□□□□□ -2.3
LMBR1-222	ENST00000638959	ITGA2	P17301	1181 aa		0.67	□□□□□ -2.3
LMBR1-222	ENST00000638959	ITIH1	P19827	911 aa		0.67	□□□□□ -2.3
LMBR1-222	ENST00000638959	DCTD	P32321	178 aa		0.67	□□□□□ -2.3
LMBR1-222	ENST00000638959	USP8	P40818	1118 aa		0.67	□□□□□ -2.3
LMBR1-222	ENST00000638959	RECQL	P46063	649 aa	Predicted RBP	0.67	□□□□□ -2.3
LMBR1-222	ENST00000638959	EFNA5	P52803	228 aa		0.67	□□□□□ -2.3
LMBR1-222	ENST00000638959	TERF1	P54274	439 aa		0.67	□□□□□ -2.3
LMBR1-222	ENST00000638959	TBL3	Q12788	808 aa	Known RBP	0.67	□□□□□ -2.3
LMBR1-222	ENST00000638959	TUBB8	Q3ZCM7	444 aa		0.67	□□□□□ -2.3
LMBR1-222	ENST00000638959	DCAF6	Q58WW2	860 aa		0.67	□□□□□ -2.3
LMBR1-222	ENST00000638959	GFRAL	Q6UXV0	394 aa		0.67	□□□□□ -2.3

Retrieved 100 of 20,778 RNA–protein pairs in 43 ms