RNA–Protein interactions for RNA: ENST00000488543.1

HDAC6-230, Transcript of histone deacetylase 6, humanhuman

TSL 2

Gene HDAC6, Length 2,484 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC6-230ENST00000488543 PRRC2BQ5JSZ5 2229 aaKnown RBP12.32□□□□□ -0.44
HDAC6-230ENST00000488543 PPAN-P2RY11A0A0B4J1V8 794 aaPredicted RBP12.32□□□□□ -0.44
HDAC6-230ENST00000488543 GREM1O60565 184 aa12.32□□□□□ -0.44
HDAC6-230ENST00000488543 OLFM2O95897 454 aa12.32□□□□□ -0.44
HDAC6-230ENST00000488543 MT-CYBP00156 380 aaPredicted RBP12.32□□□□□ -0.44
HDAC6-230ENST00000488543 PAX7P23759 505 aa12.32□□□□□ -0.44
HDAC6-230ENST00000488543 ACVRL1P37023 503 aa12.32□□□□□ -0.44
HDAC6-230ENST00000488543 SLC11A2P49281 568 aa12.32□□□□□ -0.44
HDAC6-230ENST00000488543 ERFP50548 548 aa12.32□□□□□ -0.44
HDAC6-230ENST00000488543 SLC18A1P54219 525 aa12.32□□□□□ -0.44
HDAC6-230ENST00000488543 RPS24P62847 133 aaKnown RBP12.32□□□□□ -0.44
HDAC6-230ENST00000488543 ANO4Q32M45 955 aa12.32□□□□□ -0.44
HDAC6-230ENST00000488543 CERCAMQ5T4B2 595 aa12.32□□□□□ -0.44
HDAC6-230ENST00000488543 PDE12Q6L8Q7 609 aaKnown RBP12.32□□□□□ -0.44
HDAC6-230ENST00000488543 SH2D5Q6ZV89 423 aa12.32□□□□□ -0.44
HDAC6-230ENST00000488543 LONP2Q86WA8 852 aa12.32□□□□□ -0.44
HDAC6-230ENST00000488543 CTAGE3PQ8IX95 158 aa12.32□□□□□ -0.44
HDAC6-230ENST00000488543 ZC3H8Q8N5P1 291 aaKnown RBP eCLIP12.32□□□□□ -0.44
HDAC6-230ENST00000488543 TEX26Q8N6G2 289 aa12.32□□□□□ -0.44
HDAC6-230ENST00000488543 GBP7Q8N8V2 638 aaPredicted RBP12.32□□□□□ -0.44
HDAC6-230ENST00000488543 ST13P5Q8NFI4 369 aaPredicted RBP12.32□□□□□ -0.44
HDAC6-230ENST00000488543 ING5Q8WYH8 240 aa12.32□□□□□ -0.44
HDAC6-230ENST00000488543 SERAC1Q96JX3 654 aa12.32□□□□□ -0.44
HDAC6-230ENST00000488543 ZSWIM3Q96MP5 696 aa12.32□□□□□ -0.44
HDAC6-230ENST00000488543 NAT9Q9BTE0 207 aa12.32□□□□□ -0.44
HDAC6-230ENST00000488543 NOP53Q9NZM5 478 aaKnown RBP12.32□□□□□ -0.44
HDAC6-230ENST00000488543 STARD13Q9Y3M8 1113 aa12.32□□□□□ -0.44
HDAC6-230ENST00000488543 NOTCH4Q99466 2003 aa12.32□□□□□ -0.44
HDAC6-230ENST00000488543 RAMP2O60895 175 aa12.32□□□□□ -0.44
HDAC6-230ENST00000488543 BMP8BP34820 402 aa12.32□□□□□ -0.44
HDAC6-230ENST00000488543 ADRA1AP35348 466 aa12.32□□□□□ -0.44
HDAC6-230ENST00000488543 NPY2RP49146 381 aa12.32□□□□□ -0.44
HDAC6-230ENST00000488543 YBEYP58557 167 aaPredicted RBP12.32□□□□□ -0.44
HDAC6-230ENST00000488543 TNK2Q07912 1038 aa12.32□□□□□ -0.44
HDAC6-230ENST00000488543 SLC10A7Q0GE19 358 aa12.32□□□□□ -0.44
HDAC6-230ENST00000488543 SERINC3Q13530 473 aa12.32□□□□□ -0.44
HDAC6-230ENST00000488543 HNRNPDQ14103 355 aaKnown RBP12.32□□□□□ -0.44
HDAC6-230ENST00000488543 PARP15Q460N3 678 aa12.32□□□□□ -0.44
HDAC6-230ENST00000488543 DENND5AQ6IQ26 1287 aa12.32□□□□□ -0.44
HDAC6-230ENST00000488543 CES3Q6UWW8 571 aa12.32□□□□□ -0.44
HDAC6-230ENST00000488543 MARK2Q7KZI7 788 aaKnown RBP12.32□□□□□ -0.44
HDAC6-230ENST00000488543 OR52K2Q8NGK3 314 aa12.32□□□□□ -0.44
HDAC6-230ENST00000488543 RIN3Q8TB24 985 aa12.32□□□□□ -0.44
HDAC6-230ENST00000488543 BHMTQ93088 406 aa12.32□□□□□ -0.44
HDAC6-230ENST00000488543 TTC17Q96AE7 1141 aa12.32□□□□□ -0.44
HDAC6-230ENST00000488543 SLC7A6OSQ96CW6 309 aaPredicted RBP12.32□□□□□ -0.44
HDAC6-230ENST00000488543 PRKD2Q9BZL6 878 aa12.32□□□□□ -0.44
HDAC6-230ENST00000488543 SLC17A6Q9P2U8 582 aa12.32□□□□□ -0.44
HDAC6-230ENST00000488543 AAR2Q9Y312 384 aaKnown RBP12.32□□□□□ -0.44
HDAC6-230ENST00000488543 USH1CQ9Y6N9 552 aa12.32□□□□□ -0.44
HDAC6-230ENST00000488543 ATG2AQ2TAZ0 1938 aa12.31□□□□□ -0.44
HDAC6-230ENST00000488543 A0A0G2JND7 137 aa12.31□□□□□ -0.44
HDAC6-230ENST00000488543 IQANK1A0A1B0GTG1 560 aa12.31□□□□□ -0.44
HDAC6-230ENST00000488543 HMX2A2RU54 273 aa12.31□□□□□ -0.44
HDAC6-230ENST00000488543 ENTPD5O75356 428 aa12.31□□□□□ -0.44
HDAC6-230ENST00000488543 OR1E1P30953 314 aa12.31□□□□□ -0.44
HDAC6-230ENST00000488543 IL10RBQ08334 325 aa12.31□□□□□ -0.44
HDAC6-230ENST00000488543 IHHQ14623 411 aa12.31□□□□□ -0.44
HDAC6-230ENST00000488543 SETDB1Q15047 1291 aa12.31□□□□□ -0.44
HDAC6-230ENST00000488543 POLD3Q15054 466 aaPredicted RBP12.31□□□□□ -0.44
HDAC6-230ENST00000488543 SMAD1Q15797 465 aaKnown RBP12.31□□□□□ -0.44
HDAC6-230ENST00000488543 DUSP6Q16828 381 aa12.31□□□□□ -0.44
HDAC6-230ENST00000488543 SPANXN3Q5MJ09 141 aa12.31□□□□□ -0.44
HDAC6-230ENST00000488543 GPR158Q5T848 1215 aa12.31□□□□□ -0.44
HDAC6-230ENST00000488543 TTC39BQ5VTQ0 682 aaPredicted RBP12.31□□□□□ -0.44
HDAC6-230ENST00000488543 NAPEPLDQ6IQ20 393 aa12.31□□□□□ -0.44
HDAC6-230ENST00000488543 KDELC1Q6UW63 502 aa12.31□□□□□ -0.44
HDAC6-230ENST00000488543 NLRP9Q7RTR0 991 aa12.31□□□□□ -0.44
HDAC6-230ENST00000488543 TMEM135Q86UB9 458 aa12.31□□□□□ -0.44
HDAC6-230ENST00000488543 FAM13CQ8NE31 585 aa12.31□□□□□ -0.44
HDAC6-230ENST00000488543 TBL1YQ9BQ87 522 aa12.31□□□□□ -0.44
HDAC6-230ENST00000488543 TBC1D10AQ9BXI6 508 aa12.31□□□□□ -0.44
HDAC6-230ENST00000488543 SP110Q9HB58 689 aa12.31□□□□□ -0.44
HDAC6-230ENST00000488543 IGSF5Q9NSI5 407 aa12.31□□□□□ -0.44
HDAC6-230ENST00000488543 BFARQ9NZS9 450 aa12.31□□□□□ -0.44
HDAC6-230ENST00000488543 SUFUQ9UMX1 484 aa12.31□□□□□ -0.44
HDAC6-230ENST00000488543 SMG5Q9UPR3 1016 aaKnown RBP12.31□□□□□ -0.44
HDAC6-230ENST00000488543 IKBKGQ9Y6K9 419 aa12.31□□□□□ -0.44
HDAC6-230ENST00000488543 ZFP37Q9Y6Q3 630 aaPredicted RBP12.31□□□□□ -0.44
HDAC6-230ENST00000488543 LINC01565O15544 149 aa12.31□□□□□ -0.44
HDAC6-230ENST00000488543 ANXA9O76027 345 aa12.31□□□□□ -0.44
HDAC6-230ENST00000488543 TPH1P17752 444 aa12.31□□□□□ -0.44
HDAC6-230ENST00000488543 GEMP55040 296 aa12.31□□□□□ -0.44
HDAC6-230ENST00000488543 SLC18A2Q05940 514 aa12.31□□□□□ -0.44
HDAC6-230ENST00000488543 TRIM68Q6AZZ1 485 aa12.31□□□□□ -0.44
HDAC6-230ENST00000488543 PGBD5Q8N414 524 aa12.31□□□□□ -0.44
HDAC6-230ENST00000488543 BANPQ8N9N5 519 aa12.31□□□□□ -0.44
HDAC6-230ENST00000488543 DNAAF3Q8N9W5 541 aa12.31□□□□□ -0.44
HDAC6-230ENST00000488543 IPMKQ8NFU5 416 aa12.31□□□□□ -0.44
HDAC6-230ENST00000488543 ITFG1Q8TB96 612 aa12.31□□□□□ -0.44
HDAC6-230ENST00000488543 FICDQ9BVA6 458 aa12.31□□□□□ -0.44
HDAC6-230ENST00000488543 SLC25A51Q9H1U9 297 aa12.31□□□□□ -0.44
HDAC6-230ENST00000488543 PDFQ9HBH1 243 aa12.31□□□□□ -0.44
HDAC6-230ENST00000488543 NT5MQ9NPB1 228 aa12.31□□□□□ -0.44
HDAC6-230ENST00000488543 FBXO6Q9NRD1 293 aaPredicted RBP12.31□□□□□ -0.44
HDAC6-230ENST00000488543 ZCWPW2A0A1B0GU75 182 aa12.3□□□□□ -0.44
HDAC6-230ENST00000488543 TRIM49D1C9J1S8 452 aa12.3□□□□□ -0.44
HDAC6-230ENST00000488543 PRAMEF11O60813 436 aa12.3□□□□□ -0.44
HDAC6-230ENST00000488543 MT-ND3P03897 115 aa12.3□□□□□ -0.44
HDAC6-230ENST00000488543 MMP2P08253 660 aa12.3□□□□□ -0.44
Retrieved 100 of 20,778 RNA–protein pairs in 37 ms