RNA–Protein interactions for RNA: ENST00000447376.1

SF3A1-204, Transcript of splicing factor 3a subunit 1, humanhuman

TSL 5

Gene SF3A1, Length 418 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3A1-204ENST00000447376 NPWQ8N729 165 aa16.61■□□□□ 0.25
SF3A1-204ENST00000447376 KIAA1524Q8TCG1 905 aa16.61■□□□□ 0.25
SF3A1-204ENST00000447376 FAM131CQ96AQ9 280 aa16.61■□□□□ 0.25
SF3A1-204ENST00000447376 ARRDC3Q96B67 414 aa16.61■□□□□ 0.25
SF3A1-204ENST00000447376 LACRTQ9GZZ8 138 aa16.61■□□□□ 0.25
SF3A1-204ENST00000447376 SEPT3Q9UH03 358 aa16.61■□□□□ 0.25
SF3A1-204ENST00000447376 DMTF1Q9Y222 760 aa16.61■□□□□ 0.25
SF3A1-204ENST00000447376 C4orf47A7E2U8 309 aa16.6■□□□□ 0.25
SF3A1-204ENST00000447376 PSTPIP1O43586 416 aa16.6■□□□□ 0.25
SF3A1-204ENST00000447376 IGHV4-34P06331 123 aa16.6■□□□□ 0.25
SF3A1-204ENST00000447376 TNNT1P13805 278 aa16.6■□□□□ 0.25
SF3A1-204ENST00000447376 ADRB3P13945 408 aa16.6■□□□□ 0.25
SF3A1-204ENST00000447376 HSPA9P38646 679 aaKnown RBP16.6■□□□□ 0.25
SF3A1-204ENST00000447376 CCZ1BP86790 482 aa16.6■□□□□ 0.25
SF3A1-204ENST00000447376 CCZ1P86791 482 aaPredicted RBP16.6■□□□□ 0.25
SF3A1-204ENST00000447376 LBRQ14739 615 aaKnown RBP16.6■□□□□ 0.25
SF3A1-204ENST00000447376 ANKRD20A8PQ5CZ79 823 aa16.6■□□□□ 0.25
SF3A1-204ENST00000447376 PIP5KL1Q5T9C9 394 aa16.6■□□□□ 0.25
SF3A1-204ENST00000447376 MINDY1Q8N5J2 469 aa16.6■□□□□ 0.25
SF3A1-204ENST00000447376 RNF10Q8N5U6 811 aaKnown RBP16.6■□□□□ 0.25
SF3A1-204ENST00000447376 FAM71BQ8TC56 605 aa16.6■□□□□ 0.25
SF3A1-204ENST00000447376 TSC1Q92574 1164 aa16.6■□□□□ 0.25
SF3A1-204ENST00000447376 FEM1CQ96JP0 617 aa16.6■□□□□ 0.25
SF3A1-204ENST00000447376 SERAC1Q96JX3 654 aa16.6■□□□□ 0.25
SF3A1-204ENST00000447376 PDLIM2Q96JY6 352 aa16.6■□□□□ 0.25
SF3A1-204ENST00000447376 ATP13A3Q9H7F0 1226 aa16.6■□□□□ 0.25
SF3A1-204ENST00000447376 PDFQ9HBH1 243 aa16.6■□□□□ 0.25
SF3A1-204ENST00000447376 TM9SF3Q9HD45 589 aa16.6■□□□□ 0.25
SF3A1-204ENST00000447376 RXFP3Q9NSD7 469 aa16.6■□□□□ 0.25
SF3A1-204ENST00000447376 KLHL11Q9NVR0 708 aa16.6■□□□□ 0.25
SF3A1-204ENST00000447376 MFHAS1Q9Y4C4 1052 aa16.6■□□□□ 0.25
SF3A1-204ENST00000447376 DUSP10Q9Y6W6 482 aa16.6■□□□□ 0.25
SF3A1-204ENST00000447376 CFAP54Q96N23 3096 aa16.6■□□□□ 0.25
SF3A1-204ENST00000447376 MACROD2A1Z1Q3 448 aa16.59■□□□□ 0.25
SF3A1-204ENST00000447376 C16orf96A6NNT2 1141 aa16.59■□□□□ 0.25
SF3A1-204ENST00000447376 MAGEC1O60732 1142 aa16.59■□□□□ 0.25
SF3A1-204ENST00000447376 RNGTTO60942 597 aaKnown RBP16.59■□□□□ 0.25
SF3A1-204ENST00000447376 KRT1P04264 644 aa16.59■□□□□ 0.25
SF3A1-204ENST00000447376 ZFXP17010 805 aaPredicted RBP16.59■□□□□ 0.25
SF3A1-204ENST00000447376 MX2P20592 715 aa16.59■□□□□ 0.25
SF3A1-204ENST00000447376 KDELR1P24390 212 aa16.59■□□□□ 0.25
SF3A1-204ENST00000447376 SERPINA4P29622 427 aa16.59■□□□□ 0.25
SF3A1-204ENST00000447376 MAT2AP31153 395 aaKnown RBP16.59■□□□□ 0.25
SF3A1-204ENST00000447376 CSNK1EP49674 416 aaKnown RBP16.59■□□□□ 0.25
SF3A1-204ENST00000447376 MMRN1Q13201 1228 aa16.59■□□□□ 0.25
SF3A1-204ENST00000447376 CYTH1Q15438 398 aa16.59■□□□□ 0.25
SF3A1-204ENST00000447376 ATP13A4Q4VNC1 1196 aa16.59■□□□□ 0.25
SF3A1-204ENST00000447376 KIAA1161Q6NSJ0 714 aa16.59■□□□□ 0.25
SF3A1-204ENST00000447376 TIGD7Q6NT04 549 aaPredicted RBP16.59■□□□□ 0.25
SF3A1-204ENST00000447376 HORMAD1Q86X24 394 aa16.59■□□□□ 0.25
SF3A1-204ENST00000447376 VSIG1Q86XK7 387 aa16.59■□□□□ 0.25
SF3A1-204ENST00000447376 CPNE8Q86YQ8 564 aa16.59■□□□□ 0.25
SF3A1-204ENST00000447376 UBE2Q2Q8WVN8 375 aa16.59■□□□□ 0.25
SF3A1-204ENST00000447376 EXOC2Q96KP1 924 aa16.59■□□□□ 0.25
SF3A1-204ENST00000447376 KLHL32Q96NJ5 620 aa16.59■□□□□ 0.25
SF3A1-204ENST00000447376 TUBGCP5Q96RT8 1024 aa16.59■□□□□ 0.25
SF3A1-204ENST00000447376 CPEB1Q9BZB8 566 aaKnown RBP16.59■□□□□ 0.25
SF3A1-204ENST00000447376 ETNK2Q9NVF9 386 aa16.59■□□□□ 0.25
SF3A1-204ENST00000447376 LHX3Q9UBR4 397 aa16.59■□□□□ 0.25
SF3A1-204ENST00000447376 LATO43561 262 aa16.58■□□□□ 0.24
SF3A1-204ENST00000447376 TSPAN6O43657 245 aa16.58■□□□□ 0.24
SF3A1-204ENST00000447376 AP1G1O43747 822 aa16.58■□□□□ 0.24
SF3A1-204ENST00000447376 CD48P09326 243 aa16.58■□□□□ 0.24
SF3A1-204ENST00000447376 KCNA4P22459 653 aa16.58■□□□□ 0.24
SF3A1-204ENST00000447376 NFKBIAP25963 317 aa16.58■□□□□ 0.24
SF3A1-204ENST00000447376 CD38P28907 300 aa16.58■□□□□ 0.24
SF3A1-204ENST00000447376 CSNK1DP48730 415 aa16.58■□□□□ 0.24
SF3A1-204ENST00000447376 SUOXP51687 545 aa16.58■□□□□ 0.24
SF3A1-204ENST00000447376 ARSEP51690 589 aa16.58■□□□□ 0.24
SF3A1-204ENST00000447376 PPP2CBP62714 309 aa16.58■□□□□ 0.24
SF3A1-204ENST00000447376 RPS21P63220 83 aaKnown RBP16.58■□□□□ 0.24
SF3A1-204ENST00000447376 PPP2CAP67775 309 aa16.58■□□□□ 0.24
SF3A1-204ENST00000447376 NSUN2Q08J23 767 aaKnown RBP eCLIP16.58■□□□□ 0.24
SF3A1-204ENST00000447376 ELP6Q0PNE2 266 aa16.58■□□□□ 0.24
SF3A1-204ENST00000447376 GRIK2Q13002 908 aa16.58■□□□□ 0.24
SF3A1-204ENST00000447376 STAT4Q14765 748 aa16.58■□□□□ 0.24
SF3A1-204ENST00000447376 MARC1Q5VT66 337 aa16.58■□□□□ 0.24
SF3A1-204ENST00000447376 NAPEPLDQ6IQ20 393 aa16.58■□□□□ 0.24
SF3A1-204ENST00000447376 PARS2Q7L3T8 475 aaKnown RBP16.58■□□□□ 0.24
SF3A1-204ENST00000447376 ERMP1Q7Z2K6 904 aa16.58■□□□□ 0.24
SF3A1-204ENST00000447376 TTC7BQ86TV6 843 aa16.58■□□□□ 0.24
SF3A1-204ENST00000447376 ZNF641Q96N77 438 aaPredicted RBP16.58■□□□□ 0.24
SF3A1-204ENST00000447376 SLC32A1Q9H598 525 aa16.58■□□□□ 0.24
SF3A1-204ENST00000447376 SALL4Q9UJQ4 1053 aa16.58■□□□□ 0.24
SF3A1-204ENST00000447376 HYOU1Q9Y4L1 999 aa16.58■□□□□ 0.24
SF3A1-204ENST00000447376 LOC107983988A0A1B0GUW6 1196 aaPredicted RBP16.57■□□□□ 0.24
SF3A1-204ENST00000447376 A0A1B0GVT2 93 aa16.57■□□□□ 0.24
SF3A1-204ENST00000447376 A0A1W2PQU0 124 aa16.57■□□□□ 0.24
SF3A1-204ENST00000447376 ZNF487B1APH4 448 aa16.57■□□□□ 0.24
SF3A1-204ENST00000447376 PRAMEF26H0Y7S4 382 aa16.57■□□□□ 0.24
SF3A1-204ENST00000447376 DFNA5O60443 496 aa16.57■□□□□ 0.24
SF3A1-204ENST00000447376 AKT2P31751 481 aa16.57■□□□□ 0.24
SF3A1-204ENST00000447376 GKP32189 559 aa16.57■□□□□ 0.24
SF3A1-204ENST00000447376 SCNN1BP51168 640 aa16.57■□□□□ 0.24
SF3A1-204ENST00000447376 AP1S1P61966 158 aa16.57■□□□□ 0.24
SF3A1-204ENST00000447376 BCL2L1Q07817 233 aa16.57■□□□□ 0.24
SF3A1-204ENST00000447376 CCDC173Q0VFZ6 552 aa16.57■□□□□ 0.24
SF3A1-204ENST00000447376 SGCGQ13326 291 aa16.57■□□□□ 0.24
SF3A1-204ENST00000447376 PAFAH1B3Q15102 231 aaKnown RBP16.57■□□□□ 0.24
SF3A1-204ENST00000447376 ERAP2Q6P179 960 aa16.57■□□□□ 0.24
Retrieved 100 of 20,778 RNA–protein pairs in 40.2 ms