RNA–Protein interactions for RNA: ENST00000333496.14

CLN3-201, Transcript of CLN3, battenin, humanhuman

TSL 5 BASIC

Gene CLN3, Length 1,608 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-201ENST00000333496 RNGTTO60942 597 aaKnown RBP16.04■□□□□ 0.16
CLN3-201ENST00000333496 PALMO75781 387 aa16.04■□□□□ 0.16
CLN3-201ENST00000333496 PEX11BO96011 259 aa16.04■□□□□ 0.16
CLN3-201ENST00000333496 KRT7P08729 469 aa16.04■□□□□ 0.16
CLN3-201ENST00000333496 CCDC15Q0P6D6 951 aa16.04■□□□□ 0.16
CLN3-201ENST00000333496 ANKRD20A8PQ5CZ79 823 aa16.04■□□□□ 0.16
CLN3-201ENST00000333496 GDPD4Q6W3E5 623 aa16.04■□□□□ 0.16
CLN3-201ENST00000333496 PRPF39Q86UA1 669 aaKnown RBP16.04■□□□□ 0.16
CLN3-201ENST00000333496 KCTD6Q8NC69 237 aa16.04■□□□□ 0.16
CLN3-201ENST00000333496 RAPGEF5Q92565 580 aa16.04■□□□□ 0.16
CLN3-201ENST00000333496 KLHL32Q96NJ5 620 aa16.04■□□□□ 0.16
CLN3-201ENST00000333496 CALN1Q9BXU9 219 aa16.04■□□□□ 0.16
CLN3-201ENST00000333496 OSBPL1AQ9BXW6 950 aa16.04■□□□□ 0.16
CLN3-201ENST00000333496 CPEB1Q9BZB8 566 aaKnown RBP16.04■□□□□ 0.16
CLN3-201ENST00000333496 IL21RQ9HBE5 538 aa16.04■□□□□ 0.16
CLN3-201ENST00000333496 TPX2Q9ULW0 747 aaKnown RBP16.04■□□□□ 0.16
CLN3-201ENST00000333496 ANKRD6Q9Y2G4 727 aa16.04■□□□□ 0.16
CLN3-201ENST00000333496 PCDHA13Q9Y5I0 950 aa16.04■□□□□ 0.16
CLN3-201ENST00000333496 FADS3Q9Y5Q0 445 aa16.04■□□□□ 0.16
CLN3-201ENST00000333496 SNX11Q9Y5W9 270 aa16.04■□□□□ 0.16
CLN3-201ENST00000333496 A0A1W2PR77 199 aa16.03■□□□□ 0.16
CLN3-201ENST00000333496 GOLGA6L6A8MZA4 724 aa16.03■□□□□ 0.16
CLN3-201ENST00000333496 MUSKO15146 869 aa16.03■□□□□ 0.16
CLN3-201ENST00000333496 SPINT1O43278 529 aa16.03■□□□□ 0.16
CLN3-201ENST00000333496 MAFKO60675 156 aa16.03■□□□□ 0.16
CLN3-201ENST00000333496 ABL2P42684 1182 aa16.03■□□□□ 0.16
CLN3-201ENST00000333496 HADHBP55084 474 aaKnown RBP16.03■□□□□ 0.16
CLN3-201ENST00000333496 SLC10A7Q0GE19 358 aa16.03■□□□□ 0.16
CLN3-201ENST00000333496 PDK2Q15119 407 aa16.03■□□□□ 0.16
CLN3-201ENST00000333496 KIF19Q2TAC6 998 aa16.03■□□□□ 0.16
CLN3-201ENST00000333496 NCBP2-AS2Q69YL0 99 aa16.03■□□□□ 0.16
CLN3-201ENST00000333496 NEK5Q6P3R8 708 aa16.03■□□□□ 0.16
CLN3-201ENST00000333496 FBXL19Q6PCT2 694 aa16.03■□□□□ 0.16
CLN3-201ENST00000333496 KLK6Q92876 244 aa16.03■□□□□ 0.16
CLN3-201ENST00000333496 FAF2Q96CS3 445 aa16.03■□□□□ 0.16
CLN3-201ENST00000333496 SERAC1Q96JX3 654 aa16.03■□□□□ 0.16
CLN3-201ENST00000333496 ZNF670Q9BS34 389 aa16.03■□□□□ 0.16
CLN3-201ENST00000333496 HYOU1Q9Y4L1 999 aa16.03■□□□□ 0.16
CLN3-201ENST00000333496 EPN1Q9Y6I3 576 aaPredicted RBP16.03■□□□□ 0.16
CLN3-201ENST00000333496 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP16.03■□□□□ 0.16
CLN3-201ENST00000333496 TDRD6O60522 2096 aaKnown RBP16.03■□□□□ 0.16
CLN3-201ENST00000333496 SPTBN2O15020 2390 aa16.02■□□□□ 0.16
CLN3-201ENST00000333496 A0A1W2PQU0 124 aa16.02■□□□□ 0.16
CLN3-201ENST00000333496 AP1G1O43747 822 aa16.02■□□□□ 0.16
CLN3-201ENST00000333496 MFSD11O43934 449 aa16.02■□□□□ 0.16
CLN3-201ENST00000333496 BUB1BO60566 1050 aaPredicted RBP16.02■□□□□ 0.16
CLN3-201ENST00000333496 OPHN1O60890 802 aa16.02■□□□□ 0.16
CLN3-201ENST00000333496 PCDH8O95206 1070 aa16.02■□□□□ 0.16
CLN3-201ENST00000333496 NDUFA10O95299 355 aa16.02■□□□□ 0.16
CLN3-201ENST00000333496 PIGNO95427 931 aa16.02■□□□□ 0.16
CLN3-201ENST00000333496 KDELR1P24390 212 aa16.02■□□□□ 0.16
CLN3-201ENST00000333496 SERPINB6P35237 376 aa16.02■□□□□ 0.16
CLN3-201ENST00000333496 CYLC1P35663 651 aaPredicted RBP16.02■□□□□ 0.16
CLN3-201ENST00000333496 RAD51Q06609 339 aa16.02■□□□□ 0.16
CLN3-201ENST00000333496 RFTN1Q14699 578 aaPredicted RBP16.02■□□□□ 0.16
CLN3-201ENST00000333496 PAFAH1B3Q15102 231 aaKnown RBP16.02■□□□□ 0.16
CLN3-201ENST00000333496 TEAD4Q15561 434 aa16.02■□□□□ 0.16
CLN3-201ENST00000333496 ZNF284Q2VY69 593 aa16.02■□□□□ 0.16
CLN3-201ENST00000333496 HLA-BQ31612 363 aa16.02■□□□□ 0.16
CLN3-201ENST00000333496 SEL1L3Q68CR1 1132 aa16.02■□□□□ 0.16
CLN3-201ENST00000333496 HORMAD1Q86X24 394 aa16.02■□□□□ 0.16
CLN3-201ENST00000333496 TMTC1Q8IUR5 882 aa16.02■□□□□ 0.16
CLN3-201ENST00000333496 PQLC3Q8N755 202 aa16.02■□□□□ 0.16
CLN3-201ENST00000333496 NSMCE3Q96MG7 304 aa16.02■□□□□ 0.16
CLN3-201ENST00000333496 GAREM1Q9H706 876 aa16.02■□□□□ 0.16
CLN3-201ENST00000333496 GGT7Q9UJ14 662 aa16.02■□□□□ 0.16
CLN3-201ENST00000333496 RCCD1A6NED2 376 aa16.01■□□□□ 0.15
CLN3-201ENST00000333496 C3orf70A6NLC5 250 aaPredicted RBP16.01■□□□□ 0.15
CLN3-201ENST00000333496 KCNK3O14649 394 aa16.01■□□□□ 0.15
CLN3-201ENST00000333496 VILLO15195 856 aa16.01■□□□□ 0.15
CLN3-201ENST00000333496 CD59P13987 128 aa16.01■□□□□ 0.15
CLN3-201ENST00000333496 CD38P28907 300 aa16.01■□□□□ 0.15
CLN3-201ENST00000333496 CTSKP43235 329 aa16.01■□□□□ 0.15
CLN3-201ENST00000333496 CSNK1DP48730 415 aa16.01■□□□□ 0.15
CLN3-201ENST00000333496 FGL2Q14314 439 aa16.01■□□□□ 0.15
CLN3-201ENST00000333496 LBRQ14739 615 aaKnown RBP16.01■□□□□ 0.15
CLN3-201ENST00000333496 TMEM259Q4ZIN3 620 aa16.01■□□□□ 0.15
CLN3-201ENST00000333496 PPM1JQ5JR12 505 aa16.01■□□□□ 0.15
CLN3-201ENST00000333496 NAPEPLDQ6IQ20 393 aa16.01■□□□□ 0.15
CLN3-201ENST00000333496 RAD9BQ6WBX8 426 aa16.01■□□□□ 0.15
CLN3-201ENST00000333496 TMEM139Q8IV31 216 aa16.01■□□□□ 0.15
CLN3-201ENST00000333496 PSKH2Q96QS6 385 aa16.01■□□□□ 0.15
CLN3-201ENST00000333496 GOLPH3Q9H4A6 298 aa16.01■□□□□ 0.15
CLN3-201ENST00000333496 AASDHPPTQ9NRN7 309 aa16.01■□□□□ 0.15
CLN3-201ENST00000333496 DKK3Q9UBP4 350 aa16.01■□□□□ 0.15
CLN3-201ENST00000333496 SALL4Q9UJQ4 1053 aa16.01■□□□□ 0.15
CLN3-201ENST00000333496 DMTF1Q9Y222 760 aa16.01■□□□□ 0.15
CLN3-201ENST00000333496 ITM2BQ9Y287 266 aa16.01■□□□□ 0.15
CLN3-201ENST00000333496 FNDC3AQ9Y2H6 1198 aaKnown RBP16.01■□□□□ 0.15
CLN3-201ENST00000333496 REXO2Q9Y3B8 237 aaKnown RBP16.01■□□□□ 0.15
CLN3-201ENST00000333496 MED19A0JLT2 244 aaPredicted RBP16.01■□□□□ 0.15
CLN3-201ENST00000333496 AREL1O15033 823 aa16.01■□□□□ 0.15
CLN3-201ENST00000333496 SLC31A1O15431 190 aa16.01■□□□□ 0.15
CLN3-201ENST00000333496 KCNK5O95279 499 aa16.01■□□□□ 0.15
CLN3-201ENST00000333496 MAP3K6O95382 1288 aa16.01■□□□□ 0.15
CLN3-201ENST00000333496 PRLRP16471 622 aa16.01■□□□□ 0.15
CLN3-201ENST00000333496 ITIH2P19823 946 aa16.01■□□□□ 0.15
CLN3-201ENST00000333496 COMTP21964 271 aa16.01■□□□□ 0.15
CLN3-201ENST00000333496 NUDT1P36639 197 aa16.01■□□□□ 0.15
CLN3-201ENST00000333496 NSUN2Q08J23 767 aaKnown RBP eCLIP16.01■□□□□ 0.15
Retrieved 100 of 20,778 RNA–protein pairs in 28.2 ms