RNA–Protein interactions for RNA: ENST00000627371.1

PTCD3-220, Transcript of pentatricopeptide repeat domain 3, humanhuman

TSL 5 BASIC

Gene PTCD3, Length 210 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCD3-220ENST00000627371 MYLK3Q32MK0 819 aa20.6■□□□□ 0.89
PTCD3-220ENST00000627371 SPDYCQ5MJ68 293 aa20.6■□□□□ 0.89
PTCD3-220ENST00000627371 NPNTQ6UXI9 565 aa20.6■□□□□ 0.89
PTCD3-220ENST00000627371 FAM124AQ86V42 546 aa20.6■□□□□ 0.89
PTCD3-220ENST00000627371 HDDC3Q8N4P3 179 aa20.6■□□□□ 0.89
PTCD3-220ENST00000627371 TSEN2Q8NCE0 465 aaKnown RBP20.6■□□□□ 0.89
PTCD3-220ENST00000627371 GANCQ8TET4 914 aa20.6■□□□□ 0.89
PTCD3-220ENST00000627371 MAML1Q92585 1016 aa20.6■□□□□ 0.89
PTCD3-220ENST00000627371 FAM131CQ96AQ9 280 aa20.6■□□□□ 0.89
PTCD3-220ENST00000627371 VOPP1Q96AW1 172 aa20.6■□□□□ 0.89
PTCD3-220ENST00000627371 OLFM3Q96PB7 478 aa20.6■□□□□ 0.89
PTCD3-220ENST00000627371 PSKH2Q96QS6 385 aa20.6■□□□□ 0.89
PTCD3-220ENST00000627371 BTBD1Q9H0C5 482 aa20.6■□□□□ 0.89
PTCD3-220ENST00000627371 SGK2Q9HBY8 427 aa20.6■□□□□ 0.89
PTCD3-220ENST00000627371 GPR179Q6PRD1 2367 aa20.6■□□□□ 0.89
PTCD3-220ENST00000627371 RNF103O00237 685 aa20.59■□□□□ 0.89
PTCD3-220ENST00000627371 KPNA3O00505 521 aaPredicted RBP20.59■□□□□ 0.89
PTCD3-220ENST00000627371 KRIT1O00522 736 aa20.59■□□□□ 0.89
PTCD3-220ENST00000627371 ZSCAN12O43309 604 aa20.59■□□□□ 0.89
PTCD3-220ENST00000627371 NDUFS2O75306 463 aa20.59■□□□□ 0.89
PTCD3-220ENST00000627371 PYGMP11217 842 aa20.59■□□□□ 0.89
PTCD3-220ENST00000627371 GKP32189 559 aa20.59■□□□□ 0.89
PTCD3-220ENST00000627371 HSPA9P38646 679 aaKnown RBP20.59■□□□□ 0.89
PTCD3-220ENST00000627371 CETN2P41208 172 aa20.59■□□□□ 0.89
PTCD3-220ENST00000627371 RENBPP51606 427 aa20.59■□□□□ 0.89
PTCD3-220ENST00000627371 RAD51Q06609 339 aa20.59■□□□□ 0.89
PTCD3-220ENST00000627371 ZNF33AQ06730 810 aa20.59■□□□□ 0.89
PTCD3-220ENST00000627371 PPIDQ08752 370 aaKnown RBP20.59■□□□□ 0.89
PTCD3-220ENST00000627371 NSUN2Q08J23 767 aaKnown RBP eCLIP20.59■□□□□ 0.89
PTCD3-220ENST00000627371 HNRNPDQ14103 355 aaKnown RBP20.59■□□□□ 0.89
PTCD3-220ENST00000627371 ZNF235Q14590 738 aa20.59■□□□□ 0.89
PTCD3-220ENST00000627371 PDK1Q15118 436 aa20.59■□□□□ 0.89
PTCD3-220ENST00000627371 POM121L1PQ3SYA9 428 aa20.59■□□□□ 0.89
PTCD3-220ENST00000627371 MARC1Q5VT66 337 aa20.59■□□□□ 0.89
PTCD3-220ENST00000627371 LAIR1Q6GTX8 287 aa20.59■□□□□ 0.89
PTCD3-220ENST00000627371 BBS12Q6ZW61 710 aa20.59■□□□□ 0.89
PTCD3-220ENST00000627371 BZW1Q7L1Q6 419 aaKnown RBP20.59■□□□□ 0.89
PTCD3-220ENST00000627371 LPCAT2Q7L5N7 544 aa20.59■□□□□ 0.89
PTCD3-220ENST00000627371 BBS5Q8N3I7 341 aa20.59■□□□□ 0.89
PTCD3-220ENST00000627371 TRIM58Q8NG06 486 aa20.59■□□□□ 0.89
PTCD3-220ENST00000627371 PPP1R16AQ96I34 528 aa20.59■□□□□ 0.89
PTCD3-220ENST00000627371 OSBPL1AQ9BXW6 950 aa20.59■□□□□ 0.89
PTCD3-220ENST00000627371 OSBPL8Q9BZF1 889 aa20.59■□□□□ 0.89
PTCD3-220ENST00000627371 NEUROG2Q9H2A3 272 aa20.59■□□□□ 0.89
PTCD3-220ENST00000627371 EVLQ9UI08 416 aaPredicted RBP20.59■□□□□ 0.89
PTCD3-220ENST00000627371 GON4LQ3T8J9 2241 aa20.59■□□□□ 0.89
PTCD3-220ENST00000627371 MSANTD3-TMEFF1A0A0A6YYJ0 341 aa20.58■□□□□ 0.89
PTCD3-220ENST00000627371 PRR23AA6NEV1 266 aa20.58■□□□□ 0.89
PTCD3-220ENST00000627371 PPP1R12AO14974 1030 aaPredicted RBP20.58■□□□□ 0.89
PTCD3-220ENST00000627371 MATN3O15232 486 aa20.58■□□□□ 0.89
PTCD3-220ENST00000627371 SLC7A4O43246 635 aa20.58■□□□□ 0.89
PTCD3-220ENST00000627371 PECAM1P16284 738 aaPredicted RBP20.58■□□□□ 0.89
PTCD3-220ENST00000627371 ACSL1P33121 698 aa20.58■□□□□ 0.89
PTCD3-220ENST00000627371 MMP13P45452 471 aa20.58■□□□□ 0.89
PTCD3-220ENST00000627371 RGRP47804 291 aa20.58■□□□□ 0.89
PTCD3-220ENST00000627371 CSNK1DP48730 415 aa20.58■□□□□ 0.89
PTCD3-220ENST00000627371 MEI1Q5TIA1 1274 aa20.58■□□□□ 0.89
PTCD3-220ENST00000627371 DCAF12L1Q5VU92 463 aa20.58■□□□□ 0.89
PTCD3-220ENST00000627371 REXO1L1PQ8IX06 675 aa20.58■□□□□ 0.89
PTCD3-220ENST00000627371 CCDC13Q8IYE1 715 aa20.58■□□□□ 0.89
PTCD3-220ENST00000627371 TMEFF1Q8IYR6 380 aa20.58■□□□□ 0.89
PTCD3-220ENST00000627371 TEX26Q8N6G2 289 aa20.58■□□□□ 0.89
PTCD3-220ENST00000627371 CCNYQ8ND76 341 aa20.58■□□□□ 0.89
PTCD3-220ENST00000627371 ARRDC3Q96B67 414 aa20.58■□□□□ 0.89
PTCD3-220ENST00000627371 LOXL4Q96JB6 756 aa20.58■□□□□ 0.89
PTCD3-220ENST00000627371 LGMNQ99538 433 aa20.58■□□□□ 0.89
PTCD3-220ENST00000627371 MGME1Q9BQP7 344 aa20.58■□□□□ 0.89
PTCD3-220ENST00000627371 HERPUD2Q9BSE4 406 aa20.58■□□□□ 0.89
PTCD3-220ENST00000627371 HEMGNQ9BXL5 484 aa20.58■□□□□ 0.89
PTCD3-220ENST00000627371 CPEB1Q9BZB8 566 aaKnown RBP20.58■□□□□ 0.89
PTCD3-220ENST00000627371 BRD8Q9H0E9 1235 aa20.58■□□□□ 0.89
PTCD3-220ENST00000627371 DYRK4Q9NR20 520 aa20.58■□□□□ 0.89
PTCD3-220ENST00000627371 MUSKO15146 869 aa20.57■□□□□ 0.88
PTCD3-220ENST00000627371 INSIG1O15503 277 aa20.57■□□□□ 0.88
PTCD3-220ENST00000627371 SEMA4FO95754 770 aa20.57■□□□□ 0.88
PTCD3-220ENST00000627371 ITGB7P26010 798 aa20.57■□□□□ 0.88
PTCD3-220ENST00000627371 CNTN1Q12860 1018 aa20.57■□□□□ 0.88
PTCD3-220ENST00000627371 GRM3Q14832 879 aa20.57■□□□□ 0.88
PTCD3-220ENST00000627371 AGBL4Q5VU57 503 aa20.57■□□□□ 0.88
PTCD3-220ENST00000627371 AADACL2Q6P093 401 aa20.57■□□□□ 0.88
PTCD3-220ENST00000627371 PGBD5Q8N414 524 aa20.57■□□□□ 0.88
PTCD3-220ENST00000627371 CADM4Q8NFZ8 388 aa20.57■□□□□ 0.88
PTCD3-220ENST00000627371 LRRN4Q8WUT4 740 aa20.57■□□□□ 0.88
PTCD3-220ENST00000627371 P3H4Q92791 437 aa20.57■□□□□ 0.88
PTCD3-220ENST00000627371 ZNF419Q96HQ0 510 aaPredicted RBP20.57■□□□□ 0.88
PTCD3-220ENST00000627371 GPR174Q9BXC1 333 aa20.57■□□□□ 0.88
PTCD3-220ENST00000627371 HDAC8Q9BY41 377 aa20.57■□□□□ 0.88
PTCD3-220ENST00000627371 PCED1AQ9H1Q7 454 aa20.57■□□□□ 0.88
PTCD3-220ENST00000627371 SAE1Q9UBE0 346 aaPredicted RBP20.57■□□□□ 0.88
PTCD3-220ENST00000627371 FRYLO94915 3013 aa20.57■□□□□ 0.88
PTCD3-220ENST00000627371 PI4KAP42356 2102 aa20.56■□□□□ 0.88
PTCD3-220ENST00000627371 APOC4-APOC2K7ER74 178 aa20.56■□□□□ 0.88
PTCD3-220ENST00000627371 PLK4O00444 970 aa20.56■□□□□ 0.88
PTCD3-220ENST00000627371 EPN2O95208 641 aa20.56■□□□□ 0.88
PTCD3-220ENST00000627371 APOC2P02655 101 aa20.56■□□□□ 0.88
PTCD3-220ENST00000627371 UGT2B4P06133 528 aa20.56■□□□□ 0.88
PTCD3-220ENST00000627371 CR2P20023 1033 aa20.56■□□□□ 0.88
PTCD3-220ENST00000627371 PLA2G5P39877 138 aa20.56■□□□□ 0.88
PTCD3-220ENST00000627371 MAPK8P45983 427 aa20.56■□□□□ 0.88
PTCD3-220ENST00000627371 ADPRHP54922 357 aa20.56■□□□□ 0.88
Retrieved 100 of 20,778 RNA–protein pairs in 18.7 ms