RNA–Protein interactions for RNA: ENST00000621676.4

VPS11-208, Transcript of VPS11, CORVET/HOPS core subunit, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS11, Length 3,313 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS11-208ENST00000621676 LRRC8CQ8TDW0 803 aa10.67□□□□□ -0.7
VPS11-208ENST00000621676 CCDC97Q96F63 343 aaPredicted RBP10.67□□□□□ -0.7
VPS11-208ENST00000621676 DNAJC1Q96KC8 554 aaKnown RBP10.67□□□□□ -0.7
VPS11-208ENST00000621676 SRPK1Q96SB4 655 aaKnown RBP10.67□□□□□ -0.7
VPS11-208ENST00000621676 UBE2OQ9C0C9 1292 aaKnown RBP10.67□□□□□ -0.7
VPS11-208ENST00000621676 VWA8A3KMH1 1905 aa10.67□□□□□ -0.7
VPS11-208ENST00000621676 CHADO15335 359 aa10.67□□□□□ -0.7
VPS11-208ENST00000621676 GSCP56915 257 aaPredicted RBP10.67□□□□□ -0.7
VPS11-208ENST00000621676 PAFAH1B3Q15102 231 aaKnown RBP10.67□□□□□ -0.7
VPS11-208ENST00000621676 PRKD1Q15139 912 aaPredicted RBP10.67□□□□□ -0.7
VPS11-208ENST00000621676 ANKRD20A4Q4UJ75 823 aa10.67□□□□□ -0.7
VPS11-208ENST00000621676 RIPOR1Q6ZS17 1223 aa10.67□□□□□ -0.7
VPS11-208ENST00000621676 GSDMBQ8TAX9 411 aa10.67□□□□□ -0.7
VPS11-208ENST00000621676 CHMP6Q96FZ7 201 aa10.67□□□□□ -0.7
VPS11-208ENST00000621676 ELMO2Q96JJ3 720 aa10.67□□□□□ -0.7
VPS11-208ENST00000621676 MYOCQ99972 504 aa10.67□□□□□ -0.7
VPS11-208ENST00000621676 TBL1YQ9BQ87 522 aa10.67□□□□□ -0.7
VPS11-208ENST00000621676 OXCT2Q9BYC2 517 aaPredicted RBP10.67□□□□□ -0.7
VPS11-208ENST00000621676 ACSS3Q9H6R3 686 aa10.67□□□□□ -0.7
VPS11-208ENST00000621676 ARMCX1Q9P291 453 aa10.67□□□□□ -0.7
VPS11-208ENST00000621676 EFR3BQ9Y2G0 817 aa10.67□□□□□ -0.7
VPS11-208ENST00000621676 ADH1AP07327 375 aa10.66□□□□□ -0.7
VPS11-208ENST00000621676 PMLP29590 882 aa10.66□□□□□ -0.7
VPS11-208ENST00000621676 MAGEA10P43363 369 aaPredicted RBP10.66□□□□□ -0.7
VPS11-208ENST00000621676 RPL34P49207 117 aaKnown RBP10.66□□□□□ -0.7
VPS11-208ENST00000621676 CREB5Q02930 508 aa10.66□□□□□ -0.7
VPS11-208ENST00000621676 GALNT2Q10471 571 aa10.66□□□□□ -0.7
VPS11-208ENST00000621676 TSTA3Q13630 321 aaPredicted RBP10.66□□□□□ -0.7
VPS11-208ENST00000621676 LBRQ14739 615 aaKnown RBP10.66□□□□□ -0.7
VPS11-208ENST00000621676 RBM20Q5T481 1227 aaKnown RBP10.66□□□□□ -0.7
VPS11-208ENST00000621676 VWA5B1Q5TIE3 1220 aa10.66□□□□□ -0.7
VPS11-208ENST00000621676 DET1Q7L5Y6 550 aa10.66□□□□□ -0.7
VPS11-208ENST00000621676 ELMOD1Q8N336 334 aa10.66□□□□□ -0.7
VPS11-208ENST00000621676 DCAKDQ8WVC6 231 aa10.66□□□□□ -0.7
VPS11-208ENST00000621676 NTAN1Q96AB6 310 aa10.66□□□□□ -0.7
VPS11-208ENST00000621676 NKX2-4Q9H2Z4 354 aa10.66□□□□□ -0.7
VPS11-208ENST00000621676 DNMT3BQ9UBC3 853 aaKnown RBP10.66□□□□□ -0.7
VPS11-208ENST00000621676 CABIN1Q9Y6J0 2220 aa10.66□□□□□ -0.7
VPS11-208ENST00000621676 GOLGA8QA0A0J9YX86 632 aa10.66□□□□□ -0.7
VPS11-208ENST00000621676 CFAP69A5D8W1 941 aa10.66□□□□□ -0.7
VPS11-208ENST00000621676 GOLGA8OA6NCC3 632 aa10.66□□□□□ -0.7
VPS11-208ENST00000621676 GOLGA8NF8WBI6 632 aa10.66□□□□□ -0.7
VPS11-208ENST00000621676 LINC01565O15544 149 aa10.66□□□□□ -0.7
VPS11-208ENST00000621676 UGT1A6P19224 532 aa10.66□□□□□ -0.7
VPS11-208ENST00000621676 UGT1A1P22309 533 aa10.66□□□□□ -0.7
VPS11-208ENST00000621676 UGT1A4P22310 534 aa10.66□□□□□ -0.7
VPS11-208ENST00000621676 UGT1A3P35503 534 aa10.66□□□□□ -0.7
VPS11-208ENST00000621676 UGT1A5P35504 534 aa10.66□□□□□ -0.7
VPS11-208ENST00000621676 ZBTB16Q05516 673 aa10.66□□□□□ -0.7
VPS11-208ENST00000621676 NSUN2Q08J23 767 aaKnown RBP eCLIP10.66□□□□□ -0.7
VPS11-208ENST00000621676 GPM6BQ13491 265 aa10.66□□□□□ -0.7
VPS11-208ENST00000621676 CSHL1Q14406 222 aa10.66□□□□□ -0.7
VPS11-208ENST00000621676 CHI3L2Q15782 390 aa10.66□□□□□ -0.7
VPS11-208ENST00000621676 LY6G5CQ5SRR4 150 aa10.66□□□□□ -0.7
VPS11-208ENST00000621676 CLDN19Q8N6F1 224 aa10.66□□□□□ -0.7
VPS11-208ENST00000621676 CERS2Q96G23 380 aa10.66□□□□□ -0.7
VPS11-208ENST00000621676 RAD9AQ99638 391 aa10.66□□□□□ -0.7
VPS11-208ENST00000621676 EPN3Q9H201 632 aa10.66□□□□□ -0.7
VPS11-208ENST00000621676 SLC28A3Q9HAS3 691 aa10.66□□□□□ -0.7
VPS11-208ENST00000621676 ARHGEF38Q9NXL2 777 aa10.66□□□□□ -0.7
VPS11-208ENST00000621676 PACSIN3Q9UKS6 424 aa10.66□□□□□ -0.7
VPS11-208ENST00000621676 H3BQ06 376 aaPredicted RBP10.66□□□□□ -0.7
VPS11-208ENST00000621676 TK2O00142 265 aa10.66□□□□□ -0.7
VPS11-208ENST00000621676 MATN3O15232 486 aa10.66□□□□□ -0.7
VPS11-208ENST00000621676 KRT37O76014 449 aa10.66□□□□□ -0.7
VPS11-208ENST00000621676 CD72P21854 359 aa10.66□□□□□ -0.7
VPS11-208ENST00000621676 BMPR1AP36894 532 aa10.66□□□□□ -0.7
VPS11-208ENST00000621676 RCN2Q14257 317 aa10.66□□□□□ -0.7
VPS11-208ENST00000621676 GRM3Q14832 879 aa10.66□□□□□ -0.7
VPS11-208ENST00000621676 FASTKD1Q53R41 847 aaKnown RBP10.66□□□□□ -0.7
VPS11-208ENST00000621676 ZRANB3Q5FWF4 1079 aa10.66□□□□□ -0.7
VPS11-208ENST00000621676 ADGRF1Q5T601 910 aa10.66□□□□□ -0.7
VPS11-208ENST00000621676 N4BP2L1Q5TBK1 243 aaPredicted RBP10.66□□□□□ -0.7
VPS11-208ENST00000621676 POTEHQ6S545 545 aa10.66□□□□□ -0.7
VPS11-208ENST00000621676 SLC26A11Q86WA9 606 aa10.66□□□□□ -0.7
VPS11-208ENST00000621676 SERBP1Q8NC51 408 aaKnown RBP eCLIP10.66□□□□□ -0.7
VPS11-208ENST00000621676 SPPL3Q8TCT6 385 aa10.66□□□□□ -0.7
VPS11-208ENST00000621676 IRGQQ8WZA9 623 aa10.66□□□□□ -0.7
VPS11-208ENST00000621676 SMG7Q92540 1137 aaKnown RBP10.66□□□□□ -0.7
VPS11-208ENST00000621676 SLC39A13Q96H72 371 aa10.66□□□□□ -0.7
VPS11-208ENST00000621676 MRGPRX2Q96LB1 330 aa10.66□□□□□ -0.7
VPS11-208ENST00000621676 GCNAQ96QF7 691 aa10.66□□□□□ -0.7
VPS11-208ENST00000621676 GTSE1Q9NYZ3 720 aa10.66□□□□□ -0.7
VPS11-208ENST00000621676 MARCH4Q9P2E8 410 aaPredicted RBP10.66□□□□□ -0.7
VPS11-208ENST00000621676 RENBPP51606 427 aa10.65□□□□□ -0.7
VPS11-208ENST00000621676 CAMK1Q14012 370 aa10.65□□□□□ -0.7
VPS11-208ENST00000621676 BRMS1LQ5PSV4 323 aa10.65□□□□□ -0.7
VPS11-208ENST00000621676 FSTL4Q6MZW2 842 aa10.65□□□□□ -0.7
VPS11-208ENST00000621676 TADA2BQ86TJ2 420 aa10.65□□□□□ -0.7
VPS11-208ENST00000621676 CCDC117Q8IWD4 279 aaPredicted RBP10.65□□□□□ -0.7
VPS11-208ENST00000621676 OR4K2Q8NGD2 314 aa10.65□□□□□ -0.7
VPS11-208ENST00000621676 KCTD4Q8WVF5 259 aa10.65□□□□□ -0.7
VPS11-208ENST00000621676 CDKL2Q92772 493 aa10.65□□□□□ -0.7
VPS11-208ENST00000621676 ALKBH8Q96BT7 664 aaKnown RBP10.65□□□□□ -0.7
VPS11-208ENST00000621676 TLCD1Q96CP7 247 aa10.65□□□□□ -0.7
VPS11-208ENST00000621676 PGM2Q96G03 612 aa10.65□□□□□ -0.7
VPS11-208ENST00000621676 SEC16BQ96JE7 1060 aa10.65□□□□□ -0.7
VPS11-208ENST00000621676 RILPQ96NA2 401 aa10.65□□□□□ -0.7
VPS11-208ENST00000621676 HAPLN3Q96S86 360 aa10.65□□□□□ -0.7
VPS11-208ENST00000621676 ZDHHC6Q9H6R6 413 aa10.65□□□□□ -0.7
Retrieved 100 of 20,778 RNA–protein pairs in 49.9 ms