RNA–Protein interactions for RNA: ENST00000620786.4

CLIP1-219, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene CLIP1, Length 5,913 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-219ENST00000620786 ARIH1Q9Y4X5 557 aaPredicted RBP11.5□□□□□ -0.57
CLIP1-219ENST00000620786 GLI1P08151 1106 aa11.49□□□□□ -0.57
CLIP1-219ENST00000620786 PRMT2P55345 433 aa11.49□□□□□ -0.57
CLIP1-219ENST00000620786 HSDL1Q3SXM5 330 aa11.49□□□□□ -0.57
CLIP1-219ENST00000620786 FBXW10Q5XX13 1052 aa11.49□□□□□ -0.57
CLIP1-219ENST00000620786 FAM151BQ6UXP7 276 aa11.49□□□□□ -0.57
CLIP1-219ENST00000620786 KLHL23Q8NBE8 558 aa11.49□□□□□ -0.57
CLIP1-219ENST00000620786 ZFP28Q8NHY6 868 aa11.49□□□□□ -0.57
CLIP1-219ENST00000620786 NSMCE2Q96MF7 247 aa11.49□□□□□ -0.57
CLIP1-219ENST00000620786 CHST7Q9NS84 486 aa11.49□□□□□ -0.57
CLIP1-219ENST00000620786 ATAD3AQ9NVI7 634 aa11.49□□□□□ -0.57
CLIP1-219ENST00000620786 PALM2-AKAP2B1ALY0 433 aaPredicted RBP11.49□□□□□ -0.57
CLIP1-219ENST00000620786 FAM20BO75063 409 aa11.49□□□□□ -0.57
CLIP1-219ENST00000620786 ERN1O75460 977 aaKnown RBP11.49□□□□□ -0.57
CLIP1-219ENST00000620786 PIRTP0C851 137 aa11.49□□□□□ -0.57
CLIP1-219ENST00000620786 ZSCAN5DPP0CG00 497 aa11.49□□□□□ -0.57
CLIP1-219ENST00000620786 IL5RAQ01344 420 aa11.49□□□□□ -0.57
CLIP1-219ENST00000620786 C1DQ13901 141 aaKnown RBP11.49□□□□□ -0.57
CLIP1-219ENST00000620786 GRM3Q14832 879 aa11.49□□□□□ -0.57
CLIP1-219ENST00000620786 XKR6Q5GH73 641 aa11.49□□□□□ -0.57
CLIP1-219ENST00000620786 FAM20CQ8IXL6 584 aa11.49□□□□□ -0.57
CLIP1-219ENST00000620786 ETNPPLQ8TBG4 499 aa11.49□□□□□ -0.57
CLIP1-219ENST00000620786 SLC4A5Q9BY07 1137 aa11.49□□□□□ -0.57
CLIP1-219ENST00000620786 CNGB3Q9NQW8 809 aa11.49□□□□□ -0.57
CLIP1-219ENST00000620786 DUS2Q9NX74 493 aaKnown RBP11.49□□□□□ -0.57
CLIP1-219ENST00000620786 PLK2Q9NYY3 685 aa11.49□□□□□ -0.57
CLIP1-219ENST00000620786 LIMD1Q9UGP4 676 aa11.49□□□□□ -0.57
CLIP1-219ENST00000620786 EPORP19235 508 aa11.49□□□□□ -0.57
CLIP1-219ENST00000620786 CES1P23141 567 aa11.49□□□□□ -0.57
CLIP1-219ENST00000620786 TKTP29401 623 aaKnown RBP11.49□□□□□ -0.57
CLIP1-219ENST00000620786 CORO1AP31146 461 aaKnown RBP11.49□□□□□ -0.57
CLIP1-219ENST00000620786 CBX2Q14781 532 aaPredicted RBP11.49□□□□□ -0.57
CLIP1-219ENST00000620786 EID3Q8N140 333 aa11.49□□□□□ -0.57
CLIP1-219ENST00000620786 KYQ8NBH2 561 aa11.49□□□□□ -0.57
CLIP1-219ENST00000620786 THAP1Q9NVV9 213 aa11.49□□□□□ -0.57
CLIP1-219ENST00000620786 SLC12A4Q9UP95 1085 aa11.49□□□□□ -0.57
CLIP1-219ENST00000620786 SAC3D1A6NKF1 404 aa11.49□□□□□ -0.57
CLIP1-219ENST00000620786 H3BN98 237 aa11.49□□□□□ -0.57
CLIP1-219ENST00000620786 MSI1O43347 362 aaKnown RBP11.49□□□□□ -0.57
CLIP1-219ENST00000620786 PEX10O60683 326 aa11.49□□□□□ -0.57
CLIP1-219ENST00000620786 PAGE1O75459 146 aa11.49□□□□□ -0.57
CLIP1-219ENST00000620786 LGR5O75473 907 aa11.49□□□□□ -0.57
CLIP1-219ENST00000620786 ACRP10323 421 aa11.49□□□□□ -0.57
CLIP1-219ENST00000620786 ATP6V1B1P15313 513 aa11.49□□□□□ -0.57
CLIP1-219ENST00000620786 ZNF24P17028 368 aa11.49□□□□□ -0.57
CLIP1-219ENST00000620786 SMPD1P17405 629 aa11.49□□□□□ -0.57
CLIP1-219ENST00000620786 MATKP42679 507 aa11.49□□□□□ -0.57
CLIP1-219ENST00000620786 ERVK-21P61565 698 aa11.49□□□□□ -0.57
CLIP1-219ENST00000620786 RALGDSQ12967 914 aa11.49□□□□□ -0.57
CLIP1-219ENST00000620786 CEP78Q5JTW2 689 aa11.49□□□□□ -0.57
CLIP1-219ENST00000620786 PHYKPLQ8IUZ5 450 aa11.49□□□□□ -0.57
CLIP1-219ENST00000620786 NDNQ99608 321 aa11.49□□□□□ -0.57
CLIP1-219ENST00000620786 C11orf49Q9H6J7 331 aa11.49□□□□□ -0.57
CLIP1-219ENST00000620786 KCNH1O95259 989 aa11.48□□□□□ -0.57
CLIP1-219ENST00000620786 CCNDBP1O95273 360 aa11.48□□□□□ -0.57
CLIP1-219ENST00000620786 ATG7O95352 703 aa11.48□□□□□ -0.57
CLIP1-219ENST00000620786 PCCBP05166 539 aa11.48□□□□□ -0.57
CLIP1-219ENST00000620786 CCDC166P0CW27 439 aa11.48□□□□□ -0.57
CLIP1-219ENST00000620786 MCRS1Q96EZ8 462 aa11.48□□□□□ -0.57
CLIP1-219ENST00000620786 TMEM237Q96Q45 408 aa11.48□□□□□ -0.57
CLIP1-219ENST00000620786 RIPK3Q9Y572 518 aa11.48□□□□□ -0.57
CLIP1-219ENST00000620786 AVILO75366 819 aa11.48□□□□□ -0.57
CLIP1-219ENST00000620786 RNASEH2AO75792 299 aaKnown RBP11.48□□□□□ -0.57
CLIP1-219ENST00000620786 PAICSP22234 425 aaKnown RBP11.48□□□□□ -0.57
CLIP1-219ENST00000620786 CDK7P50613 346 aa11.48□□□□□ -0.57
CLIP1-219ENST00000620786 CSNK2BP67870 215 aa11.48□□□□□ -0.57
CLIP1-219ENST00000620786 KLHL35Q6PF15 583 aa11.48□□□□□ -0.57
CLIP1-219ENST00000620786 PAGE2Q7Z2X7 111 aa11.48□□□□□ -0.57
CLIP1-219ENST00000620786 ILDR1Q86SU0 546 aaPredicted RBP11.48□□□□□ -0.57
CLIP1-219ENST00000620786 KRT73Q86Y46 540 aa11.48□□□□□ -0.57
CLIP1-219ENST00000620786 RAVER1Q8IY67 606 aaKnown RBP11.48□□□□□ -0.57
CLIP1-219ENST00000620786 DEFB107AQ8IZN7 70 aa11.48□□□□□ -0.57
CLIP1-219ENST00000620786 ZCCHC9Q8N567 271 aaKnown RBP11.48□□□□□ -0.57
CLIP1-219ENST00000620786 ACTRT2Q8TDY3 377 aa11.48□□□□□ -0.57
CLIP1-219ENST00000620786 HNRNPLLQ8WVV9 542 aaKnown RBP11.48□□□□□ -0.57
CLIP1-219ENST00000620786 RNF157Q96PX1 679 aa11.48□□□□□ -0.57
CLIP1-219ENST00000620786 BTBD9Q96Q07 612 aa11.48□□□□□ -0.57
CLIP1-219ENST00000620786 POLR1BQ9H9Y6 1135 aa11.48□□□□□ -0.57
CLIP1-219ENST00000620786 IMP3Q9NV31 184 aaKnown RBP11.48□□□□□ -0.57
CLIP1-219ENST00000620786 CLIC5Q9NZA1 410 aa11.48□□□□□ -0.57
CLIP1-219ENST00000620786 ZNF232Q9UNY5 417 aa11.48□□□□□ -0.57
CLIP1-219ENST00000620786 INVSQ9Y283 1065 aa11.48□□□□□ -0.57
CLIP1-219ENST00000620786 ASF1AQ9Y294 204 aa11.48□□□□□ -0.57
CLIP1-219ENST00000620786 MRASO14807 208 aa11.48□□□□□ -0.57
CLIP1-219ENST00000620786 EPHX1P07099 455 aa11.48□□□□□ -0.57
CLIP1-219ENST00000620786 PSMC3P17980 439 aa11.48□□□□□ -0.57
CLIP1-219ENST00000620786 LPOP22079 712 aaPredicted RBP11.48□□□□□ -0.57
CLIP1-219ENST00000620786 CLCN5P51795 746 aa11.48□□□□□ -0.57
CLIP1-219ENST00000620786 RTP1P59025 263 aa11.48□□□□□ -0.57
CLIP1-219ENST00000620786 MSLNQ13421 630 aaPredicted RBP11.48□□□□□ -0.57
CLIP1-219ENST00000620786 GPAT3Q53EU6 434 aa11.48□□□□□ -0.57
CLIP1-219ENST00000620786 BRMS1LQ5PSV4 323 aa11.48□□□□□ -0.57
CLIP1-219ENST00000620786 AADACL2Q6P093 401 aa11.48□□□□□ -0.57
CLIP1-219ENST00000620786 ZCCHC23Q6ZST2 131 aa11.48□□□□□ -0.57
CLIP1-219ENST00000620786 KIAA2013Q8IYS2 634 aa11.48□□□□□ -0.57
CLIP1-219ENST00000620786 LRRN4Q8WUT4 740 aa11.48□□□□□ -0.57
CLIP1-219ENST00000620786 MTERF3Q96E29 417 aa11.48□□□□□ -0.57
CLIP1-219ENST00000620786 FCRL2Q96LA5 508 aaPredicted RBP11.48□□□□□ -0.57
CLIP1-219ENST00000620786 MORF4L1Q9UBU8 362 aa11.48□□□□□ -0.57
CLIP1-219ENST00000620786 MROH1Q8NDA8 1641 aa11.48□□□□□ -0.57
Retrieved 100 of 20,778 RNA–protein pairs in 23.6 ms