RNA–Protein interactions for RNA: ENST00000595028.1

TRIM28-205, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 486 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-205ENST00000595028 CCDC15Q0P6D6 951 aa15.37■□□□□ 0.05
TRIM28-205ENST00000595028 ARSIQ5FYB1 569 aa15.37■□□□□ 0.05
TRIM28-205ENST00000595028 CCDC122Q5T0U0 273 aa15.37■□□□□ 0.05
TRIM28-205ENST00000595028 TBC1D3GQ6DHY5 549 aa15.37■□□□□ 0.05
TRIM28-205ENST00000595028 TBC1D3CQ6IPX1 549 aa15.37■□□□□ 0.05
TRIM28-205ENST00000595028 LEKR1Q6ZMV7 388 aa15.37■□□□□ 0.05
TRIM28-205ENST00000595028 RFX8Q6ZV50 586 aa15.37■□□□□ 0.05
TRIM28-205ENST00000595028 ERN2Q76MJ5 926 aaKnown RBP15.37■□□□□ 0.05
TRIM28-205ENST00000595028 PLPP6Q8IY26 295 aa15.37■□□□□ 0.05
TRIM28-205ENST00000595028 TBC1D3Q8IZP1 549 aaPredicted RBP15.37■□□□□ 0.05
TRIM28-205ENST00000595028 NIPA2Q8N8Q9 360 aa15.37■□□□□ 0.05
TRIM28-205ENST00000595028 OR2AP1Q8NGE2 309 aa15.37■□□□□ 0.05
TRIM28-205ENST00000595028 CASKIN2Q8WXE0 1202 aa15.37■□□□□ 0.05
TRIM28-205ENST00000595028 ARHGEF26Q96DR7 871 aa15.37■□□□□ 0.05
TRIM28-205ENST00000595028 NUP85Q9BW27 656 aa15.37■□□□□ 0.05
TRIM28-205ENST00000595028 HDAC8Q9BY41 377 aa15.37■□□□□ 0.05
TRIM28-205ENST00000595028 KLC2Q9H0B6 622 aa15.37■□□□□ 0.05
TRIM28-205ENST00000595028 SLC32A1Q9H598 525 aa15.37■□□□□ 0.05
TRIM28-205ENST00000595028 ZDHHC6Q9H6R6 413 aa15.37■□□□□ 0.05
TRIM28-205ENST00000595028 GAREM1Q9H706 876 aa15.37■□□□□ 0.05
TRIM28-205ENST00000595028 LRRC19Q9H756 370 aa15.37■□□□□ 0.05
TRIM28-205ENST00000595028 IL21RQ9HBE5 538 aa15.37■□□□□ 0.05
TRIM28-205ENST00000595028 DONSONQ9NYP3 566 aa15.37■□□□□ 0.05
TRIM28-205ENST00000595028 HECAQ9UBI9 543 aaPredicted RBP15.37■□□□□ 0.05
TRIM28-205ENST00000595028 ANAPC7Q9UJX3 599 aa15.37■□□□□ 0.05
TRIM28-205ENST00000595028 ANKRD6Q9Y2G4 727 aa15.37■□□□□ 0.05
TRIM28-205ENST00000595028 FNDC3AQ9Y2H6 1198 aaKnown RBP15.37■□□□□ 0.05
TRIM28-205ENST00000595028 CELSR3Q9NYQ7 3312 aa15.37■□□□□ 0.05
TRIM28-205ENST00000595028 TRPM6Q9BX84 2022 aa15.36■□□□□ 0.05
TRIM28-205ENST00000595028 BUB1O43683 1085 aa15.36■□□□□ 0.05
TRIM28-205ENST00000595028 TCF4P15884 667 aa15.36■□□□□ 0.05
TRIM28-205ENST00000595028 ITGB7P26010 798 aa15.36■□□□□ 0.05
TRIM28-205ENST00000595028 IL1R2P27930 398 aa15.36■□□□□ 0.05
TRIM28-205ENST00000595028 NUDT1P36639 197 aa15.36■□□□□ 0.05
TRIM28-205ENST00000595028 CTSKP43235 329 aa15.36■□□□□ 0.05
TRIM28-205ENST00000595028 ZNF135P52742 658 aaPredicted RBP15.36■□□□□ 0.05
TRIM28-205ENST00000595028 NDST2P52849 883 aa15.36■□□□□ 0.05
TRIM28-205ENST00000595028 SNRPD1P62314 119 aaKnown RBP15.36■□□□□ 0.05
TRIM28-205ENST00000595028 SERINC3Q13530 473 aa15.36■□□□□ 0.05
TRIM28-205ENST00000595028 PIGHQ14442 188 aaPredicted RBP15.36■□□□□ 0.05
TRIM28-205ENST00000595028 HLA-BQ31612 363 aa15.36■□□□□ 0.05
TRIM28-205ENST00000595028 PPP6R3Q5H9R7 873 aaPredicted RBP15.36■□□□□ 0.05
TRIM28-205ENST00000595028 NAPEPLDQ6IQ20 393 aa15.36■□□□□ 0.05
TRIM28-205ENST00000595028 ADAT2Q7Z6V5 191 aaKnown RBP15.36■□□□□ 0.05
TRIM28-205ENST00000595028 RYBPQ8N488 228 aaPredicted RBP15.36■□□□□ 0.05
TRIM28-205ENST00000595028 OR6K2Q8NGY2 324 aa15.36■□□□□ 0.05
TRIM28-205ENST00000595028 AASDHPPTQ9NRN7 309 aa15.36■□□□□ 0.05
TRIM28-205ENST00000595028 SNX11Q9Y5W9 270 aa15.36■□□□□ 0.05
TRIM28-205ENST00000595028 VILLO15195 856 aa15.35■□□□□ 0.05
TRIM28-205ENST00000595028 MFAP3LO75121 409 aa15.35■□□□□ 0.05
TRIM28-205ENST00000595028 TPM1P09493 284 aa15.35■□□□□ 0.05
TRIM28-205ENST00000595028 MAT2AP31153 395 aaKnown RBP15.35■□□□□ 0.05
TRIM28-205ENST00000595028 NEK3P51956 506 aa15.35■□□□□ 0.05
TRIM28-205ENST00000595028 C21orf59P57076 290 aa15.35■□□□□ 0.05
TRIM28-205ENST00000595028 MAPK8IP2Q13387 824 aaPredicted RBP15.35■□□□□ 0.05
TRIM28-205ENST00000595028 DPYSL2Q16555 572 aa15.35■□□□□ 0.05
TRIM28-205ENST00000595028 SLC18A3Q16572 532 aa15.35■□□□□ 0.05
TRIM28-205ENST00000595028 SMTNL2Q2TAL5 461 aa15.35■□□□□ 0.05
TRIM28-205ENST00000595028 SETMARQ53H47 684 aaPredicted RBP15.35■□□□□ 0.05
TRIM28-205ENST00000595028 INO80DQ53TQ3 878 aaPredicted RBP15.35■□□□□ 0.05
TRIM28-205ENST00000595028 KCNT1Q5JUK3 1230 aa15.35■□□□□ 0.05
TRIM28-205ENST00000595028 NEK5Q6P3R8 708 aa15.35■□□□□ 0.05
TRIM28-205ENST00000595028 PARS2Q7L3T8 475 aaKnown RBP15.35■□□□□ 0.05
TRIM28-205ENST00000595028 PRPF39Q86UA1 669 aaKnown RBP15.35■□□□□ 0.05
TRIM28-205ENST00000595028 NAXDQ8IW45 347 aa15.35■□□□□ 0.05
TRIM28-205ENST00000595028 NPWQ8N729 165 aa15.35■□□□□ 0.05
TRIM28-205ENST00000595028 OR8K1Q8NGG5 319 aa15.35■□□□□ 0.05
TRIM28-205ENST00000595028 ZNF564Q8TBZ8 553 aaPredicted RBP15.35■□□□□ 0.05
TRIM28-205ENST00000595028 VOPP1Q96AW1 172 aa15.35■□□□□ 0.05
TRIM28-205ENST00000595028 CELF6Q96J87 481 aaKnown RBP15.35■□□□□ 0.05
TRIM28-205ENST00000595028 LRIG1Q96JA1 1093 aa15.35■□□□□ 0.05
TRIM28-205ENST00000595028 SERAC1Q96JX3 654 aa15.35■□□□□ 0.05
TRIM28-205ENST00000595028 BTBD6Q96KE9 485 aa15.35■□□□□ 0.05
TRIM28-205ENST00000595028 GDAP1L1Q96MZ0 367 aa15.35■□□□□ 0.05
TRIM28-205ENST00000595028 PDFQ9HBH1 243 aa15.35■□□□□ 0.05
TRIM28-205ENST00000595028 ABHD10Q9NUJ1 306 aa15.35■□□□□ 0.05
TRIM28-205ENST00000595028 IP6K2Q9UHH9 426 aa15.35■□□□□ 0.05
TRIM28-205ENST00000595028 KLK13Q9UKR3 277 aa15.35■□□□□ 0.05
TRIM28-205ENST00000595028 DMTF1Q9Y222 760 aa15.35■□□□□ 0.05
TRIM28-205ENST00000595028 MSRB2Q9Y3D2 182 aa15.35■□□□□ 0.05
TRIM28-205ENST00000595028 SSU72P8A0A1W2PR75 194 aa15.34■□□□□ 0.05
TRIM28-205ENST00000595028 A0A1W2PR77 199 aa15.34■□□□□ 0.05
TRIM28-205ENST00000595028 H3BRJ5 948 aa15.34■□□□□ 0.05
TRIM28-205ENST00000595028 WNT9AO14904 365 aa15.34■□□□□ 0.05
TRIM28-205ENST00000595028 DAPK3O43293 454 aa15.34■□□□□ 0.05
TRIM28-205ENST00000595028 RNGTTO60942 597 aaKnown RBP15.34■□□□□ 0.05
TRIM28-205ENST00000595028 IGSF6O95976 241 aa15.34■□□□□ 0.05
TRIM28-205ENST00000595028 WNT1P04628 370 aa15.34■□□□□ 0.05
TRIM28-205ENST00000595028 ADRB3P13945 408 aa15.34■□□□□ 0.05
TRIM28-205ENST00000595028 ERCC2P18074 760 aa15.34■□□□□ 0.05
TRIM28-205ENST00000595028 CD38P28907 300 aa15.34■□□□□ 0.05
TRIM28-205ENST00000595028 GKP32189 559 aa15.34■□□□□ 0.05
TRIM28-205ENST00000595028 HCAR3P49019 387 aa15.34■□□□□ 0.05
TRIM28-205ENST00000595028 RHOAP61586 193 aa15.34■□□□□ 0.05
TRIM28-205ENST00000595028 SLC25A11Q02978 314 aaKnown RBP15.34■□□□□ 0.05
TRIM28-205ENST00000595028 DPYSQ14117 519 aa15.34■□□□□ 0.05
TRIM28-205ENST00000595028 ZNF423Q2M1K9 1284 aa15.34■□□□□ 0.05
TRIM28-205ENST00000595028 ASTE1Q2TB18 679 aaPredicted RBP15.34■□□□□ 0.05
TRIM28-205ENST00000595028 BOLA3Q53S33 107 aa15.34■□□□□ 0.05
TRIM28-205ENST00000595028 ATXN7L2Q5T6C5 722 aaPredicted RBP15.34■□□□□ 0.05
Retrieved 100 of 20,778 RNA–protein pairs in 29.1 ms