RNA–Protein interactions for RNA: ENST00000579640.5

SS18-213, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 2

Gene SS18, Length 1,840 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-213ENST00000579640 SLC44A4Q53GD3 710 aa10.89□□□□□ -0.67
SS18-213ENST00000579640 TMEM196Q5HYL7 178 aa10.89□□□□□ -0.67
SS18-213ENST00000579640 PPP1R21Q6ZMI0 780 aa10.89□□□□□ -0.67
SS18-213ENST00000579640 NAT8LQ8N9F0 302 aa10.89□□□□□ -0.67
SS18-213ENST00000579640 ARRDC2Q8TBH0 407 aa10.89□□□□□ -0.67
SS18-213ENST00000579640 CYB5D2Q8WUJ1 264 aa10.89□□□□□ -0.67
SS18-213ENST00000579640 ART4Q93070 314 aa10.89□□□□□ -0.67
SS18-213ENST00000579640 GDAP1L1Q96MZ0 367 aa10.89□□□□□ -0.67
SS18-213ENST00000579640 ASB2Q96Q27 587 aa10.89□□□□□ -0.67
SS18-213ENST00000579640 SEMA3CQ99985 751 aa10.89□□□□□ -0.67
SS18-213ENST00000579640 FOXP3Q9BZS1 431 aa10.89□□□□□ -0.67
SS18-213ENST00000579640 EPC1Q9H2F5 836 aa10.89□□□□□ -0.67
SS18-213ENST00000579640 LRRC40Q9H9A6 602 aa10.89□□□□□ -0.67
SS18-213ENST00000579640 SCUBE2Q9NQ36 999 aa10.89□□□□□ -0.67
SS18-213ENST00000579640 THAP10Q9P2Z0 257 aaPredicted RBP10.89□□□□□ -0.67
SS18-213ENST00000579640 FAM153AQ9UHL3 310 aa10.89□□□□□ -0.67
SS18-213ENST00000579640 SLCO3A1Q9UIG8 710 aa10.89□□□□□ -0.67
SS18-213ENST00000579640 RAB21Q9UL25 225 aa10.89□□□□□ -0.67
SS18-213ENST00000579640 K7ERQ8 282 aa10.88□□□□□ -0.67
SS18-213ENST00000579640 SLC34A2O95436 690 aa10.88□□□□□ -0.67
SS18-213ENST00000579640 AP2A1O95782 977 aa10.88□□□□□ -0.67
SS18-213ENST00000579640 APRTP07741 180 aa10.88□□□□□ -0.67
SS18-213ENST00000579640 SERPINF2P08697 491 aa10.88□□□□□ -0.67
SS18-213ENST00000579640 BMP1P13497 986 aa10.88□□□□□ -0.67
SS18-213ENST00000579640 HNRNPLP14866 589 aaKnown RBP eCLIP10.88□□□□□ -0.673e-8■■■■□ 22.8
SS18-213ENST00000579640 RECQLP46063 649 aaPredicted RBP10.88□□□□□ -0.67
SS18-213ENST00000579640 SCNN1BP51168 640 aa10.88□□□□□ -0.67
SS18-213ENST00000579640 DSC2Q02487 901 aa10.88□□□□□ -0.67
SS18-213ENST00000579640 PRKCQQ04759 706 aa10.88□□□□□ -0.67
SS18-213ENST00000579640 RAD51Q06609 339 aa10.88□□□□□ -0.67
SS18-213ENST00000579640 NIPAL4Q0D2K0 466 aa10.88□□□□□ -0.67
SS18-213ENST00000579640 HLTFQ14527 1009 aaKnown RBP eCLIP10.88□□□□□ -0.67
SS18-213ENST00000579640 GRM3Q14832 879 aa10.88□□□□□ -0.67
SS18-213ENST00000579640 MLF2Q15773 248 aaPredicted RBP10.88□□□□□ -0.67
SS18-213ENST00000579640 KCTD19Q17RG1 926 aaPredicted RBP10.88□□□□□ -0.67
SS18-213ENST00000579640 ACCSLQ4AC99 568 aa10.88□□□□□ -0.67
SS18-213ENST00000579640 CARD16Q5EG05 197 aa10.88□□□□□ -0.67
SS18-213ENST00000579640 FAXCQ5TGI0 409 aa10.88□□□□□ -0.67
SS18-213ENST00000579640 NAIF1Q69YI7 327 aaPredicted RBP10.88□□□□□ -0.67
SS18-213ENST00000579640 TXNDC11Q6PKC3 985 aa10.88□□□□□ -0.67
SS18-213ENST00000579640 CEP128Q6ZU80 1094 aa10.88□□□□□ -0.67
SS18-213ENST00000579640 SRLQ86TD4 932 aa10.88□□□□□ -0.67
SS18-213ENST00000579640 TAB3Q8N5C8 712 aaPredicted RBP10.88□□□□□ -0.67
SS18-213ENST00000579640 MCUQ8NE86 351 aa10.88□□□□□ -0.67
SS18-213ENST00000579640 OR2AP1Q8NGE2 309 aa10.88□□□□□ -0.67
SS18-213ENST00000579640 SORCS1Q8WY21 1168 aa10.88□□□□□ -0.67
SS18-213ENST00000579640 IFT81Q8WYA0 676 aa10.88□□□□□ -0.67
SS18-213ENST00000579640 PRCCQ92733 491 aaPredicted RBP10.88□□□□□ -0.67
SS18-213ENST00000579640 TADA1Q96BN2 335 aa10.88□□□□□ -0.67
SS18-213ENST00000579640 MYO19Q96H55 970 aa10.88□□□□□ -0.67
SS18-213ENST00000579640 PARD6BQ9BYG5 372 aa10.88□□□□□ -0.67
SS18-213ENST00000579640 TSPYL1Q9H0U9 437 aa10.88□□□□□ -0.67
SS18-213ENST00000579640 MTRF1LQ9UGC7 380 aaKnown RBP10.88□□□□□ -0.67
SS18-213ENST00000579640 LOC107983988A0A1B0GUW6 1196 aaPredicted RBP10.88□□□□□ -0.67
SS18-213ENST00000579640 AP3B1O00203 1094 aa10.88□□□□□ -0.67
SS18-213ENST00000579640 ZNF821O75541 412 aaPredicted RBP10.88□□□□□ -0.67
SS18-213ENST00000579640 SUN1O94901 812 aa10.88□□□□□ -0.67
SS18-213ENST00000579640 CA4P22748 312 aa10.88□□□□□ -0.67
SS18-213ENST00000579640 CD86P42081 329 aa10.88□□□□□ -0.67
SS18-213ENST00000579640 RGRP47804 291 aa10.88□□□□□ -0.67
SS18-213ENST00000579640 CARSP49589 748 aaKnown RBP10.88□□□□□ -0.67
SS18-213ENST00000579640 PLTPP55058 493 aa10.88□□□□□ -0.67
SS18-213ENST00000579640 SKOR1P84550 965 aa10.88□□□□□ -0.67
SS18-213ENST00000579640 NAA30Q147X3 362 aaPredicted RBP10.88□□□□□ -0.67
SS18-213ENST00000579640 PON2Q15165 354 aa10.88□□□□□ -0.67
SS18-213ENST00000579640 TRADDQ15628 312 aa10.88□□□□□ -0.67
SS18-213ENST00000579640 FBXO43Q4G163 708 aa10.88□□□□□ -0.67
SS18-213ENST00000579640 FNDC3BQ53EP0 1204 aaKnown RBP10.88□□□□□ -0.67
SS18-213ENST00000579640 DGKKQ5KSL6 1271 aa10.88□□□□□ -0.67
SS18-213ENST00000579640 KCTD11Q693B1 232 aa10.88□□□□□ -0.67
SS18-213ENST00000579640 NAPEPLDQ6IQ20 393 aa10.88□□□□□ -0.67
SS18-213ENST00000579640 NCEH1Q6PIU2 408 aa10.88□□□□□ -0.67
SS18-213ENST00000579640 ZDHHC24Q6UX98 284 aa10.88□□□□□ -0.67
SS18-213ENST00000579640 CCNI2Q6ZMN8 369 aaPredicted RBP10.88□□□□□ -0.67
SS18-213ENST00000579640 TPRG1Q6ZUI0 275 aa10.88□□□□□ -0.67
SS18-213ENST00000579640 LINC00523Q86TU6 105 aa10.88□□□□□ -0.67
SS18-213ENST00000579640 PRPF39Q86UA1 669 aaKnown RBP10.88□□□□□ -0.67
SS18-213ENST00000579640 UBALD2Q8IYN6 164 aa10.88□□□□□ -0.67
SS18-213ENST00000579640 PDCD7Q8N8D1 485 aaKnown RBP10.88□□□□□ -0.67
SS18-213ENST00000579640 FRS2Q8WU20 508 aa10.88□□□□□ -0.67
SS18-213ENST00000579640 FAM3CQ92520 227 aa10.88□□□□□ -0.67
SS18-213ENST00000579640 OXNAD1Q96HP4 312 aaPredicted RBP10.88□□□□□ -0.67
SS18-213ENST00000579640 RBM15Q96T37 977 aaKnown RBP eCLIP10.88□□□□□ -0.67
SS18-213ENST00000579640 HINFPQ9BQA5 517 aa10.88□□□□□ -0.67
SS18-213ENST00000579640 GORASP1Q9BQQ3 440 aa10.88□□□□□ -0.67
SS18-213ENST00000579640 MLPHQ9BV36 600 aaPredicted RBP10.88□□□□□ -0.67
SS18-213ENST00000579640 FBRSL1Q9HCM7 1045 aaKnown RBP10.88□□□□□ -0.67
SS18-213ENST00000579640 ZDHHC18Q9NUE0 388 aa10.88□□□□□ -0.67
SS18-213ENST00000579640 WNT16Q9UBV4 365 aa10.88□□□□□ -0.67
SS18-213ENST00000579640 SUN2Q9UH99 717 aa10.88□□□□□ -0.67
SS18-213ENST00000579640 MUC22E2RYF6 1773 aaPredicted RBP10.87□□□□□ -0.67
SS18-213ENST00000579640 EDDM13A0A1B0GTR0 161 aa10.87□□□□□ -0.67
SS18-213ENST00000579640 WASH3PC4AMC7 463 aa10.87□□□□□ -0.67
SS18-213ENST00000579640 F5H423 210 aaPredicted RBP10.87□□□□□ -0.67
SS18-213ENST00000579640 K7EQS6 105 aa10.87□□□□□ -0.67
SS18-213ENST00000579640 TP73O15350 636 aa10.87□□□□□ -0.67
SS18-213ENST00000579640 POP4O95707 220 aaKnown RBP10.87□□□□□ -0.67
SS18-213ENST00000579640 MT-CYBP00156 380 aaPredicted RBP10.87□□□□□ -0.67
SS18-213ENST00000579640 EPOP01588 193 aa10.87□□□□□ -0.67
SS18-213ENST00000579640 MMP2P08253 660 aa10.87□□□□□ -0.67
Retrieved 100 of 20,778 RNA–protein pairs in 31.5 ms