RNA–Protein interactions for RNA: ENST00000577636.5

SS18-207, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 3

Gene SS18, Length 580 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-207ENST00000577636 CXCR3P49682 368 aa10.39□□□□□ -0.75
SS18-207ENST00000577636 VPS41P49754 854 aa10.39□□□□□ -0.75
SS18-207ENST00000577636 TPI1P60174 286 aa10.39□□□□□ -0.75
SS18-207ENST00000577636 ADCY2Q08462 1091 aa10.39□□□□□ -0.75
SS18-207ENST00000577636 IFFO1Q0D2I5 559 aa10.39□□□□□ -0.75
SS18-207ENST00000577636 GPS1Q13098 491 aa10.39□□□□□ -0.75
SS18-207ENST00000577636 MMRN1Q13201 1228 aa10.39□□□□□ -0.75
SS18-207ENST00000577636 XRCC4Q13426 336 aa10.39□□□□□ -0.75
SS18-207ENST00000577636 NOMO1Q15155 1222 aa10.39□□□□□ -0.75
SS18-207ENST00000577636 TRADDQ15628 312 aa10.39□□□□□ -0.75
SS18-207ENST00000577636 P3H1Q32P28 736 aa10.39□□□□□ -0.75
SS18-207ENST00000577636 FAM153CQ494X1 144 aa10.39□□□□□ -0.75
SS18-207ENST00000577636 RAB6CQ53S08 254 aa10.39□□□□□ -0.75
SS18-207ENST00000577636 HECTD3Q5T447 861 aa10.39□□□□□ -0.75
SS18-207ENST00000577636 IZUMO3Q5VZ72 239 aa10.39□□□□□ -0.75
SS18-207ENST00000577636 GRAMD4Q6IC98 578 aa10.39□□□□□ -0.75
SS18-207ENST00000577636 TPGS1Q6ZTW0 290 aa10.39□□□□□ -0.75
SS18-207ENST00000577636 ANKS1BQ7Z6G8 1248 aa10.39□□□□□ -0.75
SS18-207ENST00000577636 CROCCP2Q86T23 111 aa10.39□□□□□ -0.75
SS18-207ENST00000577636 NAXDQ8IW45 347 aa10.39□□□□□ -0.75
SS18-207ENST00000577636 BBS7Q8IWZ6 715 aa10.39□□□□□ -0.75
SS18-207ENST00000577636 PHTF2Q8N3S3 785 aa10.39□□□□□ -0.75
SS18-207ENST00000577636 PLD5Q8N7P1 536 aa10.39□□□□□ -0.75
SS18-207ENST00000577636 TERB1Q8NA31 727 aa10.39□□□□□ -0.75
SS18-207ENST00000577636 PDZD8Q8NEN9 1154 aa10.39□□□□□ -0.75
SS18-207ENST00000577636 PCDH19Q8TAB3 1148 aa10.39□□□□□ -0.75
SS18-207ENST00000577636 SCAMP5Q8TAC9 235 aa10.39□□□□□ -0.75
SS18-207ENST00000577636 ADAM32Q8TC27 787 aa10.39□□□□□ -0.75
SS18-207ENST00000577636 DQX1Q8TE96 717 aaKnown RBP10.39□□□□□ -0.75
SS18-207ENST00000577636 UBLCP1Q8WVY7 318 aaPredicted RBP10.39□□□□□ -0.75
SS18-207ENST00000577636 ADAMTS14Q8WXS8 1223 aa10.39□□□□□ -0.75
SS18-207ENST00000577636 ART4Q93070 314 aa10.39□□□□□ -0.75
SS18-207ENST00000577636 WBP2Q969T9 261 aa10.39□□□□□ -0.75
SS18-207ENST00000577636 FAF2Q96CS3 445 aa10.39□□□□□ -0.75
SS18-207ENST00000577636 CSPG4P5Q96PW8 444 aa10.39□□□□□ -0.75
SS18-207ENST00000577636 KCTD15Q96SI1 283 aaPredicted RBP10.39□□□□□ -0.75
SS18-207ENST00000577636 TMEM121Q9BTD3 319 aa10.39□□□□□ -0.75
SS18-207ENST00000577636 RAB6CQ9H0N0 254 aa10.39□□□□□ -0.75
SS18-207ENST00000577636 TLR8Q9NR97 1041 aaKnown RBP10.39□□□□□ -0.75
SS18-207ENST00000577636 SPHK2Q9NRA0 654 aa10.39□□□□□ -0.75
SS18-207ENST00000577636 PIGVQ9NUD9 493 aa10.39□□□□□ -0.75
SS18-207ENST00000577636 TMEM30AQ9NV96 361 aa10.39□□□□□ -0.75
SS18-207ENST00000577636 DNAJC17Q9NVM6 304 aaKnown RBP10.39□□□□□ -0.75
SS18-207ENST00000577636 CLIC5Q9NZA1 410 aa10.39□□□□□ -0.75
SS18-207ENST00000577636 GRHL1Q9NZI5 618 aa10.39□□□□□ -0.75
SS18-207ENST00000577636 FAM153AQ9UHL3 310 aa10.39□□□□□ -0.75
SS18-207ENST00000577636 TPX2Q9ULW0 747 aaKnown RBP10.39□□□□□ -0.75
SS18-207ENST00000577636 APOBEC2Q9Y235 224 aaKnown RBP10.39□□□□□ -0.75
SS18-207ENST00000577636 RAXQ9Y2V3 346 aa10.39□□□□□ -0.75
SS18-207ENST00000577636 PI4KAP42356 2102 aa10.39□□□□□ -0.75
SS18-207ENST00000577636 ANAPC1Q9H1A4 1944 aa10.39□□□□□ -0.75
SS18-207ENST00000577636 A0A1W2PQF6 199 aa10.38□□□□□ -0.75
SS18-207ENST00000577636 A0A1W2PQH9 124 aa10.38□□□□□ -0.75
SS18-207ENST00000577636 HACD1B0YJ81 288 aa10.38□□□□□ -0.75
SS18-207ENST00000577636 WASH3PC4AMC7 463 aa10.38□□□□□ -0.75
SS18-207ENST00000577636 NEDD8-MDP1E9PL57 170 aa10.38□□□□□ -0.75
SS18-207ENST00000577636 PPP1R12AO14974 1030 aaPredicted RBP10.38□□□□□ -0.75
SS18-207ENST00000577636 SASH3O75995 380 aa10.38□□□□□ -0.75
SS18-207ENST00000577636 FYNP06241 537 aa10.38□□□□□ -0.75
SS18-207ENST00000577636 SERPINB6P35237 376 aa10.38□□□□□ -0.75
SS18-207ENST00000577636 EIF3BP55884 814 aaKnown RBP10.38□□□□□ -0.75
SS18-207ENST00000577636 SLC14A1Q13336 389 aa10.38□□□□□ -0.75
SS18-207ENST00000577636 PDK1Q15118 436 aa10.38□□□□□ -0.75
SS18-207ENST00000577636 OASLQ15646 514 aaKnown RBP10.38□□□□□ -0.75
SS18-207ENST00000577636 CA9Q16790 459 aa10.38□□□□□ -0.75
SS18-207ENST00000577636 ACBD5Q5T8D3 534 aaPredicted RBP10.38□□□□□ -0.75
SS18-207ENST00000577636 DENND2CQ68D51 928 aa10.38□□□□□ -0.75
SS18-207ENST00000577636 LRIG3Q6UXM1 1119 aa10.38□□□□□ -0.75
SS18-207ENST00000577636 RFX8Q6ZV50 586 aa10.38□□□□□ -0.75
SS18-207ENST00000577636 TRMT10CQ7L0Y3 403 aaKnown RBP10.38□□□□□ -0.75
SS18-207ENST00000577636 BNIPLQ7Z465 357 aa10.38□□□□□ -0.75
SS18-207ENST00000577636 TMC3Q7Z5M5 1100 aa10.38□□□□□ -0.75
SS18-207ENST00000577636 SLCO6A1Q86UG4 719 aa10.38□□□□□ -0.75
SS18-207ENST00000577636 ZC3H18Q86VM9 953 aaKnown RBP10.38□□□□□ -0.75
SS18-207ENST00000577636 CCDC25Q86WR0 208 aa10.38□□□□□ -0.75
SS18-207ENST00000577636 MARCH9Q86YJ5 346 aa10.38□□□□□ -0.75
SS18-207ENST00000577636 ETFBKMTQ8IXQ9 262 aa10.38□□□□□ -0.75
SS18-207ENST00000577636 FBXO25Q8TCJ0 367 aa10.38□□□□□ -0.75
SS18-207ENST00000577636 BHMTQ93088 406 aa10.38□□□□□ -0.75
SS18-207ENST00000577636 OTUB2Q96DC9 234 aa10.38□□□□□ -0.75
SS18-207ENST00000577636 TKTL2Q9H0I9 626 aa10.38□□□□□ -0.75
SS18-207ENST00000577636 CCSER2Q9H7U1 834 aa10.38□□□□□ -0.75
SS18-207ENST00000577636 ZDHHC18Q9NUE0 388 aa10.38□□□□□ -0.75
SS18-207ENST00000577636 CACNA2D2Q9NY47 1150 aa10.38□□□□□ -0.75
SS18-207ENST00000577636 DONSONQ9NYP3 566 aa10.38□□□□□ -0.75
SS18-207ENST00000577636 CWC15Q9P013 229 aaKnown RBP10.38□□□□□ -0.75
SS18-207ENST00000577636 SAE1Q9UBE0 346 aaPredicted RBP10.38□□□□□ -0.75
SS18-207ENST00000577636 HCN2Q9UL51 889 aa10.38□□□□□ -0.75
SS18-207ENST00000577636 ATP8A1Q9Y2Q0 1164 aa10.38□□□□□ -0.75
SS18-207ENST00000577636 KIAA1549LQ6ZVL6 1849 aa10.37□□□□□ -0.75
SS18-207ENST00000577636 PTPRDP23468 1912 aa10.37□□□□□ -0.75
SS18-207ENST00000577636 ADAMTS20P59510 1910 aa10.37□□□□□ -0.75
SS18-207ENST00000577636 MEI4A8MW99 385 aa10.37□□□□□ -0.75
SS18-207ENST00000577636 GOLGA8KD6RF30 607 aa10.37□□□□□ -0.75
SS18-207ENST00000577636 DNALI1O14645 258 aaPredicted RBP10.37□□□□□ -0.75
SS18-207ENST00000577636 KCNN4O15554 427 aa10.37□□□□□ -0.75
SS18-207ENST00000577636 IRAK2O43187 625 aa10.37□□□□□ -0.75
SS18-207ENST00000577636 HOXC11O43248 304 aaPredicted RBP10.37□□□□□ -0.75
SS18-207ENST00000577636 PPFIA2O75334 1257 aa10.37□□□□□ -0.75
SS18-207ENST00000577636 APOEP02649 317 aa10.37□□□□□ -0.75
Retrieved 100 of 20,778 RNA–protein pairs in 36 ms