RNA–Protein interactions for RNA: ENST00000560260.5

SNX1-210, Transcript of sorting nexin 1, humanhuman

TSL 1 (best)

Gene SNX1, Length 1,326 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNX1-210ENST00000560260 SLC45A4Q5BKX6 768 aa22.08■■□□□ 1.13
SNX1-210ENST00000560260 NYAP1Q6ZVC0 841 aa22.08■■□□□ 1.13
SNX1-210ENST00000560260 LONP2Q86WA8 852 aa22.08■■□□□ 1.13
SNX1-210ENST00000560260 RASGEF1CQ8N431 466 aa22.08■■□□□ 1.13
SNX1-210ENST00000560260 AADATQ8N5Z0 425 aa22.08■■□□□ 1.13
SNX1-210ENST00000560260 FRMD1Q8N878 549 aa22.08■■□□□ 1.13
SNX1-210ENST00000560260 SLC35B2Q8TB61 432 aa22.08■■□□□ 1.13
SNX1-210ENST00000560260 NSMCE1Q8WV22 266 aa22.08■■□□□ 1.13
SNX1-210ENST00000560260 RLN3Q8WXF3 142 aa22.08■■□□□ 1.13
SNX1-210ENST00000560260 ARRDC3Q96B67 414 aa22.08■■□□□ 1.13
SNX1-210ENST00000560260 MS4A14Q96JA4 679 aa22.08■■□□□ 1.13
SNX1-210ENST00000560260 NAPGQ99747 312 aaPredicted RBP22.08■■□□□ 1.13
SNX1-210ENST00000560260 HEPHQ9BQS7 1158 aa22.08■■□□□ 1.13
SNX1-210ENST00000560260 PABPC3Q9H361 631 aaKnown RBP22.08■■□□□ 1.13
SNX1-210ENST00000560260 RBM22Q9NW64 420 aaKnown RBP eCLIP22.08■■□□□ 1.13
SNX1-210ENST00000560260 USP36Q9P275 1121 aaKnown RBP22.08■■□□□ 1.13
SNX1-210ENST00000560260 IL36AQ9UHA7 158 aa22.08■■□□□ 1.13
SNX1-210ENST00000560260 PLXND1Q9Y4D7 1925 aa22.08■■□□□ 1.12
SNX1-210ENST00000560260 CCDC163A0A0D9SF12 145 aa22.07■■□□□ 1.12
SNX1-210ENST00000560260 HACD1B0YJ81 288 aa22.07■■□□□ 1.12
SNX1-210ENST00000560260 H7C0C1 242 aa22.07■■□□□ 1.12
SNX1-210ENST00000560260 ZNF185O15231 689 aa22.07■■□□□ 1.12
SNX1-210ENST00000560260 LEFTY1O75610 366 aa22.07■■□□□ 1.12
SNX1-210ENST00000560260 IL1BP01584 269 aa22.07■■□□□ 1.12
SNX1-210ENST00000560260 JCHAINP01591 159 aa22.07■■□□□ 1.12
SNX1-210ENST00000560260 RBP3P10745 1247 aa22.07■■□□□ 1.12
SNX1-210ENST00000560260 PTPN3P26045 913 aa22.07■■□□□ 1.12
SNX1-210ENST00000560260 RBL1P28749 1068 aa22.07■■□□□ 1.12
SNX1-210ENST00000560260 ATP5OP48047 213 aa22.07■■□□□ 1.12
SNX1-210ENST00000560260 NRLP54845 237 aa22.07■■□□□ 1.12
SNX1-210ENST00000560260 WASHC5Q12768 1159 aa22.07■■□□□ 1.12
SNX1-210ENST00000560260 IHHQ14623 411 aa22.07■■□□□ 1.12
SNX1-210ENST00000560260 MAP7D1Q3KQU3 841 aa22.07■■□□□ 1.12
SNX1-210ENST00000560260 ARSIQ5FYB1 569 aa22.07■■□□□ 1.12
SNX1-210ENST00000560260 PBKQ96KB5 322 aa22.07■■□□□ 1.12
SNX1-210ENST00000560260 SEPT10Q9P0V9 454 aa22.07■■□□□ 1.12
SNX1-210ENST00000560260 INVSQ9Y283 1065 aa22.07■■□□□ 1.12
SNX1-210ENST00000560260 FANCMQ8IYD8 2048 aa22.07■■□□□ 1.12
SNX1-210ENST00000560260 KRIT1O00522 736 aa22.06■■□□□ 1.12
SNX1-210ENST00000560260 PIGNO95427 931 aa22.06■■□□□ 1.12
SNX1-210ENST00000560260 SLC8A1P32418 973 aa22.06■■□□□ 1.12
SNX1-210ENST00000560260 DRD3P35462 400 aa22.06■■□□□ 1.12
SNX1-210ENST00000560260 CSNK1DP48730 415 aa22.06■■□□□ 1.12
SNX1-210ENST00000560260 RENBPP51606 427 aa22.06■■□□□ 1.12
SNX1-210ENST00000560260 PAPD7Q5XG87 772 aaKnown RBP22.06■■□□□ 1.12
SNX1-210ENST00000560260 DSG4Q86SJ6 1040 aa22.06■■□□□ 1.12
SNX1-210ENST00000560260 SRLQ86TD4 932 aa22.06■■□□□ 1.12
SNX1-210ENST00000560260 FAM160A2Q8N612 972 aaPredicted RBP22.06■■□□□ 1.12
SNX1-210ENST00000560260 TTC13Q8NBP0 860 aa22.06■■□□□ 1.12
SNX1-210ENST00000560260 ZBTB44Q8NCP5 570 aa22.06■■□□□ 1.12
SNX1-210ENST00000560260 TMIEQ8NEW7 156 aa22.06■■□□□ 1.12
SNX1-210ENST00000560260 C1orf54Q8WWF1 131 aa22.06■■□□□ 1.12
SNX1-210ENST00000560260 DNPEPQ9ULA0 475 aa22.06■■□□□ 1.12
SNX1-210ENST00000560260 CYP8B1Q9UNU6 501 aa22.06■■□□□ 1.12
SNX1-210ENST00000560260 ATP8A1Q9Y2Q0 1164 aa22.06■■□□□ 1.12
SNX1-210ENST00000560260 FARP1Q9Y4F1 1045 aaPredicted RBP22.06■■□□□ 1.12
SNX1-210ENST00000560260 ANKRD36A6QL64 1941 aa22.06■■□□□ 1.12
SNX1-210ENST00000560260 RNASEH1O60930 286 aaKnown RBP22.06■■□□□ 1.12
SNX1-210ENST00000560260 POP4O95707 220 aaKnown RBP22.06■■□□□ 1.12
SNX1-210ENST00000560260 PRNPP04156 253 aa22.06■■□□□ 1.12
SNX1-210ENST00000560260 HSPA9P38646 679 aaKnown RBP22.06■■□□□ 1.12
SNX1-210ENST00000560260 P2RY2P41231 377 aa22.06■■□□□ 1.12
SNX1-210ENST00000560260 TPMTP51580 245 aa22.06■■□□□ 1.12
SNX1-210ENST00000560260 ETF1P62495 437 aaKnown RBP22.06■■□□□ 1.12
SNX1-210ENST00000560260 DSC2Q02487 901 aa22.06■■□□□ 1.12
SNX1-210ENST00000560260 ZBTB16Q05516 673 aa22.06■■□□□ 1.12
SNX1-210ENST00000560260 NSUN2Q08J23 767 aaKnown RBP eCLIP22.06■■□□□ 1.12
SNX1-210ENST00000560260 NIPAL4Q0D2K0 466 aa22.06■■□□□ 1.12
SNX1-210ENST00000560260 LONRF2Q1L5Z9 754 aa22.06■■□□□ 1.12
SNX1-210ENST00000560260 ALG1LQ6GMV1 187 aa22.06■■□□□ 1.12
SNX1-210ENST00000560260 NCEH1Q6PIU2 408 aa22.06■■□□□ 1.12
SNX1-210ENST00000560260 CDKL3Q8IVW4 592 aaPredicted RBP22.06■■□□□ 1.12
SNX1-210ENST00000560260 ARRDC2Q8TBH0 407 aa22.06■■□□□ 1.12
SNX1-210ENST00000560260 HTR3CQ8WXA8 447 aa22.06■■□□□ 1.12
SNX1-210ENST00000560260 NUDCD1Q96RS6 583 aa22.06■■□□□ 1.12
SNX1-210ENST00000560260 FAM126AQ9BYI3 521 aaPredicted RBP22.06■■□□□ 1.12
SNX1-210ENST00000560260 NOD2Q9HC29 1040 aa22.06■■□□□ 1.12
SNX1-210ENST00000560260 ITM2CQ9NQX7 267 aa22.06■■□□□ 1.12
SNX1-210ENST00000560260 ZSCAN32Q9NX65 697 aa22.06■■□□□ 1.12
SNX1-210ENST00000560260 IGHV1OR15-9A0A0B4J2B8 117 aa22.05■■□□□ 1.12
SNX1-210ENST00000560260 A0A1W2PP55 124 aa22.05■■□□□ 1.12
SNX1-210ENST00000560260 C1QTNF3-AMACRE9PGA6 284 aa22.05■■□□□ 1.12
SNX1-210ENST00000560260 KPNA3O00505 521 aaPredicted RBP22.05■■□□□ 1.12
SNX1-210ENST00000560260 ZBTB24O43167 697 aaPredicted RBP22.05■■□□□ 1.12
SNX1-210ENST00000560260 LIASO43766 372 aa22.05■■□□□ 1.12
SNX1-210ENST00000560260 ADH1BP00325 375 aa22.05■■□□□ 1.12
SNX1-210ENST00000560260 IGLV3-19P01714 112 aa22.05■■□□□ 1.12
SNX1-210ENST00000560260 DNTTP04053 509 aa22.05■■□□□ 1.12
SNX1-210ENST00000560260 UGT2B4P06133 528 aa22.05■■□□□ 1.12
SNX1-210ENST00000560260 C5AR1P21730 350 aa22.05■■□□□ 1.12
SNX1-210ENST00000560260 BCKDHBP21953 392 aa22.05■■□□□ 1.12
SNX1-210ENST00000560260 SCNN1BP51168 640 aa22.05■■□□□ 1.12
SNX1-210ENST00000560260 SYT10Q6XYQ8 523 aa22.05■■□□□ 1.12
SNX1-210ENST00000560260 BBS5Q8N3I7 341 aa22.05■■□□□ 1.12
SNX1-210ENST00000560260 FAM131CQ96AQ9 280 aa22.05■■□□□ 1.12
SNX1-210ENST00000560260 C16orf45Q96MC5 204 aaPredicted RBP22.05■■□□□ 1.12
SNX1-210ENST00000560260 SEMA3CQ99985 751 aa22.05■■□□□ 1.12
SNX1-210ENST00000560260 USP29Q9HBJ7 922 aa22.05■■□□□ 1.12
SNX1-210ENST00000560260 MBD1Q9UIS9 605 aaPredicted RBP22.05■■□□□ 1.12
SNX1-210ENST00000560260 TTC7AQ9ULT0 858 aaPredicted RBP22.05■■□□□ 1.12
Retrieved 100 of 20,778 RNA–protein pairs in 56.7 ms