RNA–Protein interactions for RNA: ENST00000557269.5

SHMT2-227, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 5

Gene SHMT2, Length 576 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-227ENST00000557269 NSUN2Q08J23 767 aaKnown RBP eCLIP13□□□□□ -0.33
SHMT2-227ENST00000557269 BYSLQ13895 437 aaKnown RBP13□□□□□ -0.33
SHMT2-227ENST00000557269 STARD3Q14849 445 aa13□□□□□ -0.33
SHMT2-227ENST00000557269 CYP1B1Q16678 543 aa13□□□□□ -0.33
SHMT2-227ENST00000557269 POM121L1PQ3SYA9 428 aa13□□□□□ -0.33
SHMT2-227ENST00000557269 TEX44Q53QW1 395 aa13□□□□□ -0.33
SHMT2-227ENST00000557269 ARSIQ5FYB1 569 aa13□□□□□ -0.33
SHMT2-227ENST00000557269 TMEM31Q5JXX7 168 aa13□□□□□ -0.33
SHMT2-227ENST00000557269 HEATR6Q6AI08 1181 aaKnown RBP13□□□□□ -0.33
SHMT2-227ENST00000557269 SRLQ86TD4 932 aa13□□□□□ -0.33
SHMT2-227ENST00000557269 METTL3Q86U44 580 aaKnown RBP13□□□□□ -0.33
SHMT2-227ENST00000557269 TMPRSS6Q8IU80 811 aa13□□□□□ -0.33
SHMT2-227ENST00000557269 MMAAQ8IVH4 418 aaKnown RBP13□□□□□ -0.33
SHMT2-227ENST00000557269 PLPP6Q8IY26 295 aa13□□□□□ -0.33
SHMT2-227ENST00000557269 RYBPQ8N488 228 aaPredicted RBP13□□□□□ -0.33
SHMT2-227ENST00000557269 GLIS1Q8NBF1 620 aa13□□□□□ -0.33
SHMT2-227ENST00000557269 OR2T3Q8NH03 318 aa13□□□□□ -0.33
SHMT2-227ENST00000557269 ARRDC2Q8TBH0 407 aa13□□□□□ -0.33
SHMT2-227ENST00000557269 GRIN3AQ8TCU5 1115 aa13□□□□□ -0.33
SHMT2-227ENST00000557269 MAIP1Q8WWC4 291 aa13□□□□□ -0.33
SHMT2-227ENST00000557269 MRGPRX1Q96LB2 322 aa13□□□□□ -0.33
SHMT2-227ENST00000557269 TEKT5Q96M29 485 aa13□□□□□ -0.33
SHMT2-227ENST00000557269 GDAP1L1Q96MZ0 367 aa13□□□□□ -0.33
SHMT2-227ENST00000557269 IER2Q9BTL4 223 aa13□□□□□ -0.33
SHMT2-227ENST00000557269 FRMD8P1Q9BZ68 369 aaPredicted RBP13□□□□□ -0.33
SHMT2-227ENST00000557269 NOD2Q9HC29 1040 aa13□□□□□ -0.33
SHMT2-227ENST00000557269 CD93Q9NPY3 652 aa13□□□□□ -0.33
SHMT2-227ENST00000557269 PPM1HQ9ULR3 514 aa13□□□□□ -0.33
SHMT2-227ENST00000557269 WASF2Q9Y6W5 498 aa13□□□□□ -0.33
SHMT2-227ENST00000557269 F5H423 210 aaPredicted RBP12.99□□□□□ -0.33
SHMT2-227ENST00000557269 KIF2AO00139 706 aaPredicted RBP12.99□□□□□ -0.33
SHMT2-227ENST00000557269 PLK4O00444 970 aa12.99□□□□□ -0.33
SHMT2-227ENST00000557269 LEFTY1O75610 366 aa12.99□□□□□ -0.33
SHMT2-227ENST00000557269 PAPSS2O95340 614 aaPredicted RBP12.99□□□□□ -0.33
SHMT2-227ENST00000557269 PIGNO95427 931 aa12.99□□□□□ -0.33
SHMT2-227ENST00000557269 POP4O95707 220 aaKnown RBP12.99□□□□□ -0.33
SHMT2-227ENST00000557269 IGSF6O95976 241 aa12.99□□□□□ -0.33
SHMT2-227ENST00000557269 TUBB4AP04350 444 aa12.99□□□□□ -0.33
SHMT2-227ENST00000557269 ITGAVP06756 1048 aa12.99□□□□□ -0.33
SHMT2-227ENST00000557269 MMP2P08253 660 aa12.99□□□□□ -0.33
SHMT2-227ENST00000557269 CSNK1DP48730 415 aa12.99□□□□□ -0.33
SHMT2-227ENST00000557269 CCR3P51677 355 aa12.99□□□□□ -0.33
SHMT2-227ENST00000557269 ITKQ08881 620 aa12.99□□□□□ -0.33
SHMT2-227ENST00000557269 ELAVL3Q14576 367 aaKnown RBP12.99□□□□□ -0.33
SHMT2-227ENST00000557269 ANO7Q6IWH7 933 aa12.99□□□□□ -0.33
SHMT2-227ENST00000557269 DRICH1Q6PGQ1 229 aaPredicted RBP12.99□□□□□ -0.33
SHMT2-227ENST00000557269 NCEH1Q6PIU2 408 aa12.99□□□□□ -0.33
SHMT2-227ENST00000557269 C1orf210Q8IVY1 113 aa12.99□□□□□ -0.33
SHMT2-227ENST00000557269 C12orf50Q8NA57 414 aaPredicted RBP12.99□□□□□ -0.33
SHMT2-227ENST00000557269 MDGA1Q8NFP4 955 aa12.99□□□□□ -0.33
SHMT2-227ENST00000557269 TSTD1Q8NFU3 115 aa12.99□□□□□ -0.33
SHMT2-227ENST00000557269 CCDC110Q8TBZ0 833 aa12.99□□□□□ -0.33
SHMT2-227ENST00000557269 HMGB4Q8WW32 186 aa12.99□□□□□ -0.33
SHMT2-227ENST00000557269 OR8D1Q8WZ84 308 aa12.99□□□□□ -0.33
SHMT2-227ENST00000557269 MAGOHBQ96A72 148 aaKnown RBP12.99□□□□□ -0.33
SHMT2-227ENST00000557269 NUDCD1Q96RS6 583 aa12.99□□□□□ -0.33
SHMT2-227ENST00000557269 NAP1L3Q99457 506 aaPredicted RBP12.99□□□□□ -0.33
SHMT2-227ENST00000557269 SEMA3CQ99985 751 aa12.99□□□□□ -0.33
SHMT2-227ENST00000557269 GORASP1Q9BQQ3 440 aa12.99□□□□□ -0.33
SHMT2-227ENST00000557269 HEPHQ9BQS7 1158 aa12.99□□□□□ -0.33
SHMT2-227ENST00000557269 LRFN3Q9BTN0 628 aa12.99□□□□□ -0.33
SHMT2-227ENST00000557269 ZDHHC6Q9H6R6 413 aa12.99□□□□□ -0.33
SHMT2-227ENST00000557269 POLMQ9NP87 494 aaPredicted RBP12.99□□□□□ -0.33
SHMT2-227ENST00000557269 PRMT8Q9NR22 394 aaPredicted RBP12.99□□□□□ -0.33
SHMT2-227ENST00000557269 EBF1Q9UH73 591 aa12.99□□□□□ -0.33
SHMT2-227ENST00000557269 IL36AQ9UHA7 158 aa12.99□□□□□ -0.33
SHMT2-227ENST00000557269 ZNF148Q9UQR1 794 aa12.99□□□□□ -0.33
SHMT2-227ENST00000557269 DRG1Q9Y295 367 aaKnown RBP12.99□□□□□ -0.33
SHMT2-227ENST00000557269 TTLL3Q9Y4R7 772 aa12.99□□□□□ -0.33
SHMT2-227ENST00000557269 KMT2EQ8IZD2 1858 aa12.99□□□□□ -0.33
SHMT2-227ENST00000557269 C5orf60A6NFR6 353 aa12.98□□□□□ -0.33
SHMT2-227ENST00000557269 MTSS1O43312 755 aa12.98□□□□□ -0.33
SHMT2-227ENST00000557269 APBB3O95704 486 aa12.98□□□□□ -0.33
SHMT2-227ENST00000557269 IL1BP01584 269 aa12.98□□□□□ -0.33
SHMT2-227ENST00000557269 ZSCAN5DPP0CG00 497 aa12.98□□□□□ -0.33
SHMT2-227ENST00000557269 C7P10643 843 aa12.98□□□□□ -0.33
SHMT2-227ENST00000557269 NFKB1P19838 968 aa12.98□□□□□ -0.33
SHMT2-227ENST00000557269 COILP38432 576 aaPredicted RBP12.98□□□□□ -0.33
SHMT2-227ENST00000557269 HSPA9P38646 679 aaKnown RBP12.98□□□□□ -0.33
SHMT2-227ENST00000557269 RECQLP46063 649 aaPredicted RBP12.98□□□□□ -0.33
SHMT2-227ENST00000557269 PSMD8P48556 350 aa12.98□□□□□ -0.33
SHMT2-227ENST00000557269 ANKRD20A2Q5SQ80 823 aa12.98□□□□□ -0.33
SHMT2-227ENST00000557269 ANKRD20A1Q5TYW2 823 aa12.98□□□□□ -0.33
SHMT2-227ENST00000557269 ANKRD20A3Q5VUR7 823 aa12.98□□□□□ -0.33
SHMT2-227ENST00000557269 ALG1LQ6GMV1 187 aa12.98□□□□□ -0.33
SHMT2-227ENST00000557269 PID1Q7Z2X4 250 aa12.98□□□□□ -0.33
SHMT2-227ENST00000557269 PRPF39Q86UA1 669 aaKnown RBP12.98□□□□□ -0.33
SHMT2-227ENST00000557269 RASSF3Q86WH2 238 aa12.98□□□□□ -0.33
SHMT2-227ENST00000557269 CAMK1DQ8IU85 385 aa12.98□□□□□ -0.33
SHMT2-227ENST00000557269 BBS5Q8N3I7 341 aa12.98□□□□□ -0.33
SHMT2-227ENST00000557269 TAB3Q8N5C8 712 aaPredicted RBP12.98□□□□□ -0.33
SHMT2-227ENST00000557269 SPATA22Q8NHS9 363 aa12.98□□□□□ -0.33
SHMT2-227ENST00000557269 KIF18AQ8NI77 898 aa12.98□□□□□ -0.33
SHMT2-227ENST00000557269 PIP4K2CQ8TBX8 421 aa12.98□□□□□ -0.33
SHMT2-227ENST00000557269 ARRDC3Q96B67 414 aa12.98□□□□□ -0.33
SHMT2-227ENST00000557269 RTP4Q96DX8 246 aa12.98□□□□□ -0.33
SHMT2-227ENST00000557269 C1QTNF1Q9BXJ1 281 aa12.98□□□□□ -0.33
SHMT2-227ENST00000557269 POLR1EQ9GZS1 481 aaKnown RBP12.98□□□□□ -0.33
SHMT2-227ENST00000557269 GLOD4Q9HC38 313 aa12.98□□□□□ -0.33
SHMT2-227ENST00000557269 SCUBE2Q9NQ36 999 aa12.98□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 28.7 ms