RNA–Protein interactions for RNA: ENST00000519664.1

SYNPO-204, Transcript of synaptopodin, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene SYNPO, Length 4,571 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNPO-204ENST00000519664 MAP2K5Q13163 448 aa11.83□□□□□ -0.52
SYNPO-204ENST00000519664 SOWAHAQ2M3V2 549 aa11.83□□□□□ -0.52
SYNPO-204ENST00000519664 SYPL2Q5VXT5 272 aa11.83□□□□□ -0.52
SYNPO-204ENST00000519664 USP50Q70EL3 339 aaPredicted RBP11.83□□□□□ -0.52
SYNPO-204ENST00000519664 SLC26A9Q7LBE3 791 aa11.83□□□□□ -0.52
SYNPO-204ENST00000519664 ARCQ7LC44 396 aa11.83□□□□□ -0.52
SYNPO-204ENST00000519664 STRADAQ7RTN6 431 aa11.83□□□□□ -0.52
SYNPO-204ENST00000519664 P3H2Q8IVL5 708 aa11.83□□□□□ -0.52
SYNPO-204ENST00000519664 GALNT15Q8N3T1 639 aa11.83□□□□□ -0.52
SYNPO-204ENST00000519664 MPP4Q96JB8 637 aa11.83□□□□□ -0.52
SYNPO-204ENST00000519664 HGH1Q9BTY7 390 aa11.83□□□□□ -0.52
SYNPO-204ENST00000519664 PARVBQ9HBI1 364 aa11.83□□□□□ -0.52
SYNPO-204ENST00000519664 CNGB3Q9NQW8 809 aa11.83□□□□□ -0.52
SYNPO-204ENST00000519664 GALNT8Q9NY28 637 aa11.83□□□□□ -0.52
SYNPO-204ENST00000519664 TAS2R1Q9NYW7 299 aa11.83□□□□□ -0.52
SYNPO-204ENST00000519664 VTI1BQ9UEU0 232 aa11.83□□□□□ -0.52
SYNPO-204ENST00000519664 TMCO1Q9UM00 188 aa11.83□□□□□ -0.52
SYNPO-204ENST00000519664 COMMD3-BMI1R4GMX3 469 aa11.83□□□□□ -0.52
SYNPO-204ENST00000519664 ABCC6O95255 1503 aa11.83□□□□□ -0.52
SYNPO-204ENST00000519664 FFAR3O14843 346 aa11.83□□□□□ -0.52
SYNPO-204ENST00000519664 GPR42O15529 346 aa11.83□□□□□ -0.52
SYNPO-204ENST00000519664 MAN1A2O60476 641 aa11.83□□□□□ -0.52
SYNPO-204ENST00000519664 FAM58BPP0C7Q3 252 aa11.83□□□□□ -0.52
SYNPO-204ENST00000519664 CCNG1P51959 295 aa11.83□□□□□ -0.52
SYNPO-204ENST00000519664 RAB10P61026 200 aa11.83□□□□□ -0.52
SYNPO-204ENST00000519664 NEDD8Q15843 81 aa11.83□□□□□ -0.52
SYNPO-204ENST00000519664 CACHD1Q5VU97 1274 aa11.83□□□□□ -0.52
SYNPO-204ENST00000519664 UGT3A1Q6NUS8 523 aa11.83□□□□□ -0.52
SYNPO-204ENST00000519664 RINLQ6ZS11 566 aa11.83□□□□□ -0.52
SYNPO-204ENST00000519664 ANKS1BQ7Z6G8 1248 aa11.83□□□□□ -0.52
SYNPO-204ENST00000519664 MTMR14Q8NCE2 650 aa11.83□□□□□ -0.52
SYNPO-204ENST00000519664 KCTD14Q9BQ13 255 aaPredicted RBP11.83□□□□□ -0.52
SYNPO-204ENST00000519664 ELOVL6Q9H5J4 265 aa11.83□□□□□ -0.52
SYNPO-204ENST00000519664 LGALS13Q9UHV8 139 aa11.83□□□□□ -0.52
SYNPO-204ENST00000519664 SLIT2O94813 1529 aa11.83□□□□□ -0.52
SYNPO-204ENST00000519664 C5P01031 1676 aa11.83□□□□□ -0.52
SYNPO-204ENST00000519664 SCN11AQ9UI33 1791 aa11.82□□□□□ -0.52
SYNPO-204ENST00000519664 C16orf96A6NNT2 1141 aa11.82□□□□□ -0.52
SYNPO-204ENST00000519664 PTGES3LE9PB15 166 aa11.82□□□□□ -0.52
SYNPO-204ENST00000519664 C22orf31O95567 290 aa11.82□□□□□ -0.52
SYNPO-204ENST00000519664 LTA4HP09960 611 aaKnown RBP11.82□□□□□ -0.52
SYNPO-204ENST00000519664 MYL4P12829 197 aa11.82□□□□□ -0.52
SYNPO-204ENST00000519664 FASP25445 335 aa11.82□□□□□ -0.52
SYNPO-204ENST00000519664 CRYBB1P53674 252 aaPredicted RBP11.82□□□□□ -0.52
SYNPO-204ENST00000519664 MPP1Q00013 466 aa11.82□□□□□ -0.52
SYNPO-204ENST00000519664 HORMAD1Q86X24 394 aa11.82□□□□□ -0.52
SYNPO-204ENST00000519664 NXNL1Q96CM4 212 aa11.82□□□□□ -0.52
SYNPO-204ENST00000519664 UBA2Q9UBT2 640 aaPredicted RBP11.82□□□□□ -0.52
SYNPO-204ENST00000519664 ZNF112Q9UJU3 913 aa11.82□□□□□ -0.52
SYNPO-204ENST00000519664 ATP5F1P24539 256 aaPredicted RBP11.82□□□□□ -0.52
SYNPO-204ENST00000519664 CLK1P49759 484 aaKnown RBP11.82□□□□□ -0.52
SYNPO-204ENST00000519664 GRM3Q14832 879 aa11.82□□□□□ -0.52
SYNPO-204ENST00000519664 ARMC3Q5W041 872 aa11.82□□□□□ -0.52
SYNPO-204ENST00000519664 TAS1R3Q7RTX0 852 aa11.82□□□□□ -0.52
SYNPO-204ENST00000519664 EFL1Q7Z2Z2 1120 aaKnown RBP11.82□□□□□ -0.52
SYNPO-204ENST00000519664 CDYL2Q8N8U2 506 aa11.82□□□□□ -0.52
SYNPO-204ENST00000519664 PCED1BQ96HM7 432 aa11.82□□□□□ -0.52
SYNPO-204ENST00000519664 RBBP8Q99708 897 aa11.82□□□□□ -0.52
SYNPO-204ENST00000519664 C1orf50Q9BV19 199 aa11.82□□□□□ -0.52
SYNPO-204ENST00000519664 ROGDIQ9GZN7 287 aa11.82□□□□□ -0.52
SYNPO-204ENST00000519664 ABCG8Q9H221 673 aa11.82□□□□□ -0.52
SYNPO-204ENST00000519664 PLK2Q9NYY3 685 aa11.82□□□□□ -0.52
SYNPO-204ENST00000519664 COPG2Q9UBF2 871 aa11.82□□□□□ -0.52
SYNPO-204ENST00000519664 RGSL1A5PLK6 1076 aa11.82□□□□□ -0.52
SYNPO-204ENST00000519664 CLOCKO15516 846 aa11.82□□□□□ -0.52
SYNPO-204ENST00000519664 WNT7BP56706 349 aa11.82□□□□□ -0.52
SYNPO-204ENST00000519664 VAC14Q08AM6 782 aa11.82□□□□□ -0.52
SYNPO-204ENST00000519664 ARL13AQ5H913 290 aaPredicted RBP11.82□□□□□ -0.52
SYNPO-204ENST00000519664 RALGPS1Q5JS13 557 aa11.82□□□□□ -0.52
SYNPO-204ENST00000519664 SCARA3Q6AZY7 606 aa11.82□□□□□ -0.52
SYNPO-204ENST00000519664 IL27RAQ6UWB1 636 aa11.82□□□□□ -0.52
SYNPO-204ENST00000519664 GPR141Q7Z602 305 aa11.82□□□□□ -0.52
SYNPO-204ENST00000519664 DENND1CQ8IV53 801 aa11.82□□□□□ -0.52
SYNPO-204ENST00000519664 KIAA2013Q8IYS2 634 aa11.82□□□□□ -0.52
SYNPO-204ENST00000519664 PIWIL1Q96J94 861 aaKnown RBP11.82□□□□□ -0.52
SYNPO-204ENST00000519664 NSMCE2Q96MF7 247 aa11.82□□□□□ -0.52
SYNPO-204ENST00000519664 HBEGFQ99075 208 aa11.82□□□□□ -0.52
SYNPO-204ENST00000519664 HERPUD2Q9BSE4 406 aa11.82□□□□□ -0.52
SYNPO-204ENST00000519664 CADM1Q9BY67 442 aaKnown RBP11.82□□□□□ -0.52
SYNPO-204ENST00000519664 C5orf58C9J3I9 102 aa11.82□□□□□ -0.52
SYNPO-204ENST00000519664 SEC22BO75396 215 aa11.82□□□□□ -0.52
SYNPO-204ENST00000519664 POU1F1P28069 291 aa11.82□□□□□ -0.52
SYNPO-204ENST00000519664 CCL23P55773 120 aa11.82□□□□□ -0.52
SYNPO-204ENST00000519664 WASHC5Q12768 1159 aa11.82□□□□□ -0.52
SYNPO-204ENST00000519664 PLD1Q13393 1074 aa11.82□□□□□ -0.52
SYNPO-204ENST00000519664 KRT72Q14CN4 511 aa11.82□□□□□ -0.52
SYNPO-204ENST00000519664 ZIK1Q3SY52 487 aaPredicted RBP11.82□□□□□ -0.52
SYNPO-204ENST00000519664 POM121L1PQ3SYA9 428 aa11.82□□□□□ -0.52
SYNPO-204ENST00000519664 AARS2Q5JTZ9 985 aaKnown RBP11.82□□□□□ -0.52
SYNPO-204ENST00000519664 DENND6AQ8IWF6 608 aa11.82□□□□□ -0.52
SYNPO-204ENST00000519664 BANPQ8N9N5 519 aa11.82□□□□□ -0.52
SYNPO-204ENST00000519664 FAM156AQ8NDB6 213 aa11.82□□□□□ -0.52
SYNPO-204ENST00000519664 ACMSDQ8TDX5 336 aa11.82□□□□□ -0.52
SYNPO-204ENST00000519664 ZC3H15Q8WU90 426 aaKnown RBP11.82□□□□□ -0.52
SYNPO-204ENST00000519664 RHOBTB2Q9BYZ6 727 aa11.82□□□□□ -0.52
SYNPO-204ENST00000519664 GPBP1L1Q9HC44 474 aaPredicted RBP11.82□□□□□ -0.52
SYNPO-204ENST00000519664 ZNHIT2Q9UHR6 403 aa11.82□□□□□ -0.52
SYNPO-204ENST00000519664 WASF2Q9Y6W5 498 aa11.82□□□□□ -0.52
SYNPO-204ENST00000519664 GNG14A0A1W2PPG7 69 aa11.81□□□□□ -0.52
SYNPO-204ENST00000519664 KANSL1LA0AUZ9 987 aa11.81□□□□□ -0.52
Retrieved 100 of 20,778 RNA–protein pairs in 52 ms