RNA–Protein interactions for RNA: ENST00000509638.5

LIMCH1-211, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 1,570 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-211ENST00000509638 KCNN4O15554 427 aa30.03■■■□□ 2.4
LIMCH1-211ENST00000509638 ALDH1A2O94788 518 aa30.03■■■□□ 2.4
LIMCH1-211ENST00000509638 ZNF776Q68DI1 518 aaPredicted RBP30.03■■■□□ 2.4
LIMCH1-211ENST00000509638 DSG4Q86SJ6 1040 aa30.03■■■□□ 2.4
LIMCH1-211ENST00000509638 PRELID2Q8N945 189 aa30.03■■■□□ 2.4
LIMCH1-211ENST00000509638 MRGPRX1Q96LB2 322 aa30.03■■■□□ 2.4
LIMCH1-211ENST00000509638 FAM129BQ96TA1 746 aa30.03■■■□□ 2.4
LIMCH1-211ENST00000509638 FERMT1Q9BQL6 677 aa30.03■■■□□ 2.4
LIMCH1-211ENST00000509638 POLR1EQ9GZS1 481 aaKnown RBP30.03■■■□□ 2.4
LIMCH1-211ENST00000509638 HAUS2Q9NVX0 235 aa30.03■■■□□ 2.4
LIMCH1-211ENST00000509638 AMACRQ9UHK6 382 aa30.03■■■□□ 2.4
LIMCH1-211ENST00000509638 RNASEH1O60930 286 aaKnown RBP30.03■■■□□ 2.4
LIMCH1-211ENST00000509638 TUBB4AP04350 444 aa30.03■■■□□ 2.4
LIMCH1-211ENST00000509638 CTSLP07711 333 aa30.03■■■□□ 2.4
LIMCH1-211ENST00000509638 GKP32189 559 aa30.03■■■□□ 2.4
LIMCH1-211ENST00000509638 OASLQ15646 514 aaKnown RBP30.03■■■□□ 2.4
LIMCH1-211ENST00000509638 CCNG2Q16589 344 aa30.03■■■□□ 2.4
LIMCH1-211ENST00000509638 TSSK4Q6SA08 328 aa30.03■■■□□ 2.4
LIMCH1-211ENST00000509638 TMPRSS6Q8IU80 811 aa30.03■■■□□ 2.4
LIMCH1-211ENST00000509638 MMAAQ8IVH4 418 aaKnown RBP30.03■■■□□ 2.4
LIMCH1-211ENST00000509638 CNTD1Q8N815 330 aa30.03■■■□□ 2.4
LIMCH1-211ENST00000509638 AGAP3Q96P47 875 aa30.03■■■□□ 2.4
LIMCH1-211ENST00000509638 TMEM121Q9BTD3 319 aa30.03■■■□□ 2.4
LIMCH1-211ENST00000509638 LRFN3Q9BTN0 628 aa30.03■■■□□ 2.4
LIMCH1-211ENST00000509638 IL36AQ9UHA7 158 aa30.03■■■□□ 2.4
LIMCH1-211ENST00000509638 EVLQ9UI08 416 aaPredicted RBP30.03■■■□□ 2.4
LIMCH1-211ENST00000509638 ZBTB24O43167 697 aaPredicted RBP30.02■■■□□ 2.4
LIMCH1-211ENST00000509638 CHRNA3P32297 505 aa30.02■■■□□ 2.4
LIMCH1-211ENST00000509638 PSMD8P48556 350 aa30.02■■■□□ 2.4
LIMCH1-211ENST00000509638 PXNP49023 591 aaPredicted RBP30.02■■■□□ 2.4
LIMCH1-211ENST00000509638 NRLP54845 237 aa30.02■■■□□ 2.4
LIMCH1-211ENST00000509638 NSUN2Q08J23 767 aaKnown RBP eCLIP30.02■■■□□ 2.4
LIMCH1-211ENST00000509638 KIAA1324Q6UXG2 1013 aaKnown RBP30.02■■■□□ 2.4
LIMCH1-211ENST00000509638 MAML2Q8IZL2 1156 aaPredicted RBP30.02■■■□□ 2.4
LIMCH1-211ENST00000509638 ZC3H8Q8N5P1 291 aaKnown RBP eCLIP30.02■■■□□ 2.4
LIMCH1-211ENST00000509638 CAMKK1Q8N5S9 505 aa30.02■■■□□ 2.4
LIMCH1-211ENST00000509638 HEPHQ9BQS7 1158 aa30.02■■■□□ 2.4
LIMCH1-211ENST00000509638 WASF2Q9Y6W5 498 aa30.02■■■□□ 2.4
LIMCH1-211ENST00000509638 EML5Q05BV3 1969 aa30.01■■■□□ 2.4
LIMCH1-211ENST00000509638 TTC24A2A3L6 582 aaPredicted RBP30.01■■■□□ 2.39
LIMCH1-211ENST00000509638 INSIG1O15503 277 aa30.01■■■□□ 2.39
LIMCH1-211ENST00000509638 IL1BP01584 269 aa30.01■■■□□ 2.39
LIMCH1-211ENST00000509638 SCNN1BP51168 640 aa30.01■■■□□ 2.39
LIMCH1-211ENST00000509638 RPS14P62263 151 aaKnown RBP30.01■■■□□ 2.39
LIMCH1-211ENST00000509638 ITKQ08881 620 aa30.01■■■□□ 2.39
LIMCH1-211ENST00000509638 MYLK3Q32MK0 819 aa30.01■■■□□ 2.39
LIMCH1-211ENST00000509638 TEX44Q53QW1 395 aa30.01■■■□□ 2.39
LIMCH1-211ENST00000509638 PGBD3Q8N328 593 aa30.01■■■□□ 2.39
LIMCH1-211ENST00000509638 KLHL8Q9P2G9 620 aaPredicted RBP30.01■■■□□ 2.39
LIMCH1-211ENST00000509638 SARDHQ9UL12 918 aa30.01■■■□□ 2.39
LIMCH1-211ENST00000509638 ATP8A1Q9Y2Q0 1164 aa30.01■■■□□ 2.39
LIMCH1-211ENST00000509638 GOLGA6L10A0A0M3HER8 536 aa30■■■□□ 2.39
LIMCH1-211ENST00000509638 LEFTY1O75610 366 aa30■■■□□ 2.39
LIMCH1-211ENST00000509638 ZNF189O75820 626 aaPredicted RBP30■■■□□ 2.39
LIMCH1-211ENST00000509638 POP4O95707 220 aaKnown RBP30■■■□□ 2.39
LIMCH1-211ENST00000509638 CR2P20023 1033 aa30■■■□□ 2.39
LIMCH1-211ENST00000509638 ALG1LQ6GMV1 187 aa30■■■□□ 2.39
LIMCH1-211ENST00000509638 SRLQ86TD4 932 aa30■■■□□ 2.39
LIMCH1-211ENST00000509638 RASSF3Q86WH2 238 aa30■■■□□ 2.39
LIMCH1-211ENST00000509638 ZNF567Q8N184 647 aa30■■■□□ 2.39
LIMCH1-211ENST00000509638 FAM71DQ8N9W8 422 aa30■■■□□ 2.39
LIMCH1-211ENST00000509638 PRCCQ92733 491 aaPredicted RBP30■■■□□ 2.39
LIMCH1-211ENST00000509638 NUDCD1Q96RS6 583 aa30■■■□□ 2.39
LIMCH1-211ENST00000509638 VAT1Q99536 393 aa30■■■□□ 2.39
LIMCH1-211ENST00000509638 SEMA3CQ99985 751 aa30■■■□□ 2.39
LIMCH1-211ENST00000509638 USP29Q9HBJ7 922 aa30■■■□□ 2.39
LIMCH1-211ENST00000509638 SCUBE2Q9NQ36 999 aa30■■■□□ 2.39
LIMCH1-211ENST00000509638 HOMER3Q9NSC5 361 aa30■■■□□ 2.39
LIMCH1-211ENST00000509638 PPM1HQ9ULR3 514 aa30■■■□□ 2.39
LIMCH1-211ENST00000509638 ZNF148Q9UQR1 794 aa30■■■□□ 2.39
LIMCH1-211ENST00000509638 CFAP69A5D8W1 941 aa29.99■■■□□ 2.39
LIMCH1-211ENST00000509638 STK10O94804 968 aaKnown RBP29.99■■■□□ 2.39
LIMCH1-211ENST00000509638 PRNPP04156 253 aa29.99■■■□□ 2.39
LIMCH1-211ENST00000509638 TDGF1P13385 188 aa29.99■■■□□ 2.39
LIMCH1-211ENST00000509638 CSNK1DP48730 415 aa29.99■■■□□ 2.39
LIMCH1-211ENST00000509638 GDF10P55107 478 aa29.99■■■□□ 2.39
LIMCH1-211ENST00000509638 AP1S1P61966 158 aa29.99■■■□□ 2.39
LIMCH1-211ENST00000509638 DSC2Q02487 901 aa29.99■■■□□ 2.39
LIMCH1-211ENST00000509638 CST6Q15828 149 aa29.99■■■□□ 2.39
LIMCH1-211ENST00000509638 POM121L1PQ3SYA9 428 aa29.99■■■□□ 2.39
LIMCH1-211ENST00000509638 DRICH1Q6PGQ1 229 aaPredicted RBP29.99■■■□□ 2.39
LIMCH1-211ENST00000509638 PIP4K2CQ8TBX8 421 aa29.99■■■□□ 2.39
LIMCH1-211ENST00000509638 VOPP1Q96AW1 172 aa29.99■■■□□ 2.39
LIMCH1-211ENST00000509638 SIPA1Q96FS4 1042 aa29.99■■■□□ 2.39
LIMCH1-211ENST00000509638 TEKT5Q96M29 485 aa29.99■■■□□ 2.39
LIMCH1-211ENST00000509638 C1QTNF3-AMACRE9PGA6 284 aa29.98■■■□□ 2.39
LIMCH1-211ENST00000509638 MAPK8P45983 427 aa29.98■■■□□ 2.39
LIMCH1-211ENST00000509638 CSTF1Q05048 431 aaKnown RBP29.98■■■□□ 2.39
LIMCH1-211ENST00000509638 RAD51Q06609 339 aa29.98■■■□□ 2.39
LIMCH1-211ENST00000509638 ARSIQ5FYB1 569 aa29.98■■■□□ 2.39
LIMCH1-211ENST00000509638 TPSD1Q9BZJ3 242 aa29.98■■■□□ 2.39
LIMCH1-211ENST00000509638 NOD2Q9HC29 1040 aa29.98■■■□□ 2.39
LIMCH1-211ENST00000509638 PDE2AO00408 941 aaPredicted RBP29.98■■■□□ 2.39
LIMCH1-211ENST00000509638 MID1O15344 667 aa29.98■■■□□ 2.39
LIMCH1-211ENST00000509638 PIGNO95427 931 aa29.98■■■□□ 2.39
LIMCH1-211ENST00000509638 ADH1BP00325 375 aa29.98■■■□□ 2.39
LIMCH1-211ENST00000509638 ITGAVP06756 1048 aa29.98■■■□□ 2.39
LIMCH1-211ENST00000509638 PAFAH1B1P43034 410 aa29.98■■■□□ 2.39
LIMCH1-211ENST00000509638 METAP1P53582 386 aa29.98■■■□□ 2.39
LIMCH1-211ENST00000509638 DMWDQ09019 674 aa29.98■■■□□ 2.39
Retrieved 100 of 20,778 RNA–protein pairs in 22.2 ms