RNA–Protein interactions for RNA: ENST00000413716.6

CCDC88A-204, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 1 (best) BASIC

Gene CCDC88A, Length 9,586 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-204ENST00000413716 MFHAS1Q9Y4C4 1052 aa13.46□□□□□ -0.25
CCDC88A-204ENST00000413716 PGAM1P18669 254 aa13.46□□□□□ -0.25
CCDC88A-204ENST00000413716 RBM34P42696 430 aaKnown RBP13.46□□□□□ -0.25
CCDC88A-204ENST00000413716 RHOAP61586 193 aa13.46□□□□□ -0.25
CCDC88A-204ENST00000413716 ZIK1Q3SY52 487 aaPredicted RBP13.46□□□□□ -0.25
CCDC88A-204ENST00000413716 FAAH2Q6GMR7 532 aa13.46□□□□□ -0.25
CCDC88A-204ENST00000413716 CRTC3Q6UUV7 619 aa13.46□□□□□ -0.25
CCDC88A-204ENST00000413716 ZNF518AQ6AHZ1 1483 aa13.46□□□□□ -0.25
CCDC88A-204ENST00000413716 A0A0A6YYK5 440 aaPredicted RBP13.46□□□□□ -0.25
CCDC88A-204ENST00000413716 BHMG1C9JSJ3 638 aaPredicted RBP13.46□□□□□ -0.25
CCDC88A-204ENST00000413716 H3BM21 787 aa13.46□□□□□ -0.25
CCDC88A-204ENST00000413716 PTDSS1P48651 473 aaKnown RBP13.46□□□□□ -0.25
CCDC88A-204ENST00000413716 NAB1Q13506 487 aa13.46□□□□□ -0.25
CCDC88A-204ENST00000413716 ALG10Q5BKT4 473 aa13.46□□□□□ -0.25
CCDC88A-204ENST00000413716 FAXCQ5TGI0 409 aa13.46□□□□□ -0.25
CCDC88A-204ENST00000413716 ALKBH2Q6NS38 261 aa13.46□□□□□ -0.25
CCDC88A-204ENST00000413716 KCNS3Q9BQ31 491 aa13.46□□□□□ -0.25
CCDC88A-204ENST00000413716 TNFSF13BQ9Y275 285 aa13.46□□□□□ -0.25
CCDC88A-204ENST00000413716 REXO2Q9Y3B8 237 aaKnown RBP13.46□□□□□ -0.25
CCDC88A-204ENST00000413716 AVILO75366 819 aa13.46□□□□□ -0.26
CCDC88A-204ENST00000413716 TFRCP02786 760 aaKnown RBP13.46□□□□□ -0.26
CCDC88A-204ENST00000413716 CYP4B1P13584 511 aa13.46□□□□□ -0.26
CCDC88A-204ENST00000413716 PIK3CBP42338 1070 aa13.46□□□□□ -0.26
CCDC88A-204ENST00000413716 SCNN1BP51168 640 aa13.46□□□□□ -0.26
CCDC88A-204ENST00000413716 NR1I3Q14994 352 aa13.46□□□□□ -0.26
CCDC88A-204ENST00000413716 SNX32Q86XE0 403 aa13.46□□□□□ -0.26
CCDC88A-204ENST00000413716 SLITRK4Q8IW52 837 aa13.46□□□□□ -0.26
CCDC88A-204ENST00000413716 FBXW8Q8N3Y1 598 aa13.46□□□□□ -0.26
CCDC88A-204ENST00000413716 CDYL2Q8N8U2 506 aa13.46□□□□□ -0.26
CCDC88A-204ENST00000413716 LPCAT1Q8NF37 534 aa13.46□□□□□ -0.26
CCDC88A-204ENST00000413716 KCNK4Q9NYG8 393 aa13.46□□□□□ -0.26
CCDC88A-204ENST00000413716 FBXO10Q9UK96 956 aa13.46□□□□□ -0.26
CCDC88A-204ENST00000413716 SAMHD1Q9Y3Z3 626 aaKnown RBP13.46□□□□□ -0.26
CCDC88A-204ENST00000413716 ZBTB14O43829 449 aa13.46□□□□□ -0.26
CCDC88A-204ENST00000413716 IFNA16P05015 189 aa13.46□□□□□ -0.26
CCDC88A-204ENST00000413716 EMC2Q15006 297 aa13.46□□□□□ -0.26
CCDC88A-204ENST00000413716 CHST15Q7LFX5 561 aaPredicted RBP13.46□□□□□ -0.26
CCDC88A-204ENST00000413716 MTFMTQ96DP5 389 aaKnown RBP13.46□□□□□ -0.26
CCDC88A-204ENST00000413716 PRRG4Q9BZD6 226 aa13.46□□□□□ -0.26
CCDC88A-204ENST00000413716 CDC42EP4Q9H3Q1 356 aaKnown RBP13.46□□□□□ -0.26
CCDC88A-204ENST00000413716 MTMR10Q9NXD2 777 aa13.46□□□□□ -0.26
CCDC88A-204ENST00000413716 CLIC5Q9NZA1 410 aa13.46□□□□□ -0.26
CCDC88A-204ENST00000413716 F9P00740 461 aa13.45□□□□□ -0.26
CCDC88A-204ENST00000413716 MBL2P11226 248 aaPredicted RBP13.45□□□□□ -0.26
CCDC88A-204ENST00000413716 ZNF7P17097 686 aaPredicted RBP13.45□□□□□ -0.26
CCDC88A-204ENST00000413716 RGS6P49758 472 aa13.45□□□□□ -0.26
CCDC88A-204ENST00000413716 GLT6D1Q7Z4J2 308 aa13.45□□□□□ -0.26
CCDC88A-204ENST00000413716 TMEM143Q96AN5 459 aa13.45□□□□□ -0.26
CCDC88A-204ENST00000413716 RAD51AP1Q96B01 352 aa13.45□□□□□ -0.26
CCDC88A-204ENST00000413716 CBWD1Q9BRT8 395 aa13.45□□□□□ -0.26
CCDC88A-204ENST00000413716 CDC42BPGQ6DT37 1551 aa13.45□□□□□ -0.26
CCDC88A-204ENST00000413716 USP17L10C9JJH3 530 aa13.45□□□□□ -0.26
CCDC88A-204ENST00000413716 TBX3O15119 743 aa13.45□□□□□ -0.26
CCDC88A-204ENST00000413716 CST1P01037 141 aa13.45□□□□□ -0.26
CCDC88A-204ENST00000413716 SETMARQ53H47 684 aaPredicted RBP13.45□□□□□ -0.26
CCDC88A-204ENST00000413716 GCNT7Q6ZNI0 430 aa13.45□□□□□ -0.26
CCDC88A-204ENST00000413716 POU5F2Q8N7G0 328 aa13.45□□□□□ -0.26
CCDC88A-204ENST00000413716 SLC4A5Q9BY07 1137 aa13.45□□□□□ -0.26
CCDC88A-204ENST00000413716 ANKDD1BA6NHY2 528 aa13.45□□□□□ -0.26
CCDC88A-204ENST00000413716 GNAO1P09471 354 aa13.45□□□□□ -0.26
CCDC88A-204ENST00000413716 FDX1P10109 184 aa13.45□□□□□ -0.26
CCDC88A-204ENST00000413716 MTHFD1P11586 935 aaKnown RBP13.45□□□□□ -0.26
CCDC88A-204ENST00000413716 ACAD10Q6JQN1 1059 aa13.45□□□□□ -0.26
CCDC88A-204ENST00000413716 TEFMQ96QE5 360 aaKnown RBP13.45□□□□□ -0.26
CCDC88A-204ENST00000413716 UGT2B11O75310 529 aa13.45□□□□□ -0.26
CCDC88A-204ENST00000413716 SLC6A2P23975 617 aa13.45□□□□□ -0.26
CCDC88A-204ENST00000413716 CXCR2P25025 360 aa13.45□□□□□ -0.26
CCDC88A-204ENST00000413716 LY9Q9HBG7 655 aa13.45□□□□□ -0.26
CCDC88A-204ENST00000413716 H3BNX3 289 aa13.45□□□□□ -0.26
CCDC88A-204ENST00000413716 CSH1P0DML2 217 aa13.45□□□□□ -0.26
CCDC88A-204ENST00000413716 CSH2P0DML3 217 aa13.45□□□□□ -0.26
CCDC88A-204ENST00000413716 CYP2A6P11509 494 aaPredicted RBP13.45□□□□□ -0.26
CCDC88A-204ENST00000413716 SPDYCQ5MJ68 293 aa13.45□□□□□ -0.26
CCDC88A-204ENST00000413716 STK40Q8N2I9 435 aa13.45□□□□□ -0.26
CCDC88A-204ENST00000413716 PARP8Q8N3A8 854 aa13.45□□□□□ -0.26
CCDC88A-204ENST00000413716 OR2L8Q8NGY9 312 aa13.45□□□□□ -0.26
CCDC88A-204ENST00000413716 TCEAL3Q969E4 200 aa13.45□□□□□ -0.26
CCDC88A-204ENST00000413716 ZNF512BQ96KM6 892 aaPredicted RBP13.45□□□□□ -0.26
CCDC88A-204ENST00000413716 AGPAT5Q9NUQ2 364 aa13.45□□□□□ -0.26
CCDC88A-204ENST00000413716 SQORQ9Y6N5 450 aa13.45□□□□□ -0.26
CCDC88A-204ENST00000413716 C5orf51A6NDU8 294 aa13.45□□□□□ -0.26
CCDC88A-204ENST00000413716 NR2F1P10589 423 aa13.45□□□□□ -0.26
CCDC88A-204ENST00000413716 AXLP30530 894 aa13.45□□□□□ -0.26
CCDC88A-204ENST00000413716 ZNF433Q8N7K0 673 aaPredicted RBP13.45□□□□□ -0.26
CCDC88A-204ENST00000413716 SNAPC5O75971 98 aa13.45□□□□□ -0.26
CCDC88A-204ENST00000413716 NAA20P61599 178 aa13.45□□□□□ -0.26
CCDC88A-204ENST00000413716 SLC28A1O00337 649 aa13.45□□□□□ -0.26
CCDC88A-204ENST00000413716 SASH3O75995 380 aa13.45□□□□□ -0.26
CCDC88A-204ENST00000413716 NMT1P30419 496 aaKnown RBP13.45□□□□□ -0.26
CCDC88A-204ENST00000413716 PRAMEF17Q5VTA0 474 aa13.45□□□□□ -0.26
CCDC88A-204ENST00000413716 SNX20Q7Z614 316 aa13.45□□□□□ -0.26
CCDC88A-204ENST00000413716 OR10H5Q8NGA6 315 aa13.45□□□□□ -0.26
CCDC88A-204ENST00000413716 POC1BQ8TC44 478 aa13.45□□□□□ -0.26
CCDC88A-204ENST00000413716 REEP2Q9BRK0 252 aa13.45□□□□□ -0.26
CCDC88A-204ENST00000413716 FBXO21O94952 628 aa13.44□□□□□ -0.26
CCDC88A-204ENST00000413716 NADKO95544 446 aaPredicted RBP13.44□□□□□ -0.26
CCDC88A-204ENST00000413716 FADS2O95864 444 aaKnown RBP13.44□□□□□ -0.26
CCDC88A-204ENST00000413716 HLA-DRAP01903 254 aa13.44□□□□□ -0.26
CCDC88A-204ENST00000413716 CYP1A1P04798 512 aaPredicted RBP13.44□□□□□ -0.26
CCDC88A-204ENST00000413716 CDK16Q00536 496 aa13.44□□□□□ -0.26
Retrieved 100 of 20,778 RNA–protein pairs in 34.6 ms