RNA–Protein interactions for RNA: ENST00000625916.1

SCN1A-208, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 4

Gene SCN1A, Length 560 nt, Biotype retained intron, Subcellular localisation Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-208ENST00000625916 FAM172BPA6NC97 362 aa3.05□□□□□ -1.92
SCN1A-208ENST00000625916 KIF1CO43896 1103 aaKnown RBP3.05□□□□□ -1.92
SCN1A-208ENST00000625916 APOHP02749 345 aaPredicted RBP3.05□□□□□ -1.92
SCN1A-208ENST00000625916 CFC1BP0CG36 223 aa3.05□□□□□ -1.92
SCN1A-208ENST00000625916 CFC1P0CG37 223 aa3.05□□□□□ -1.92
SCN1A-208ENST00000625916 DPP6P42658 865 aa3.05□□□□□ -1.92
SCN1A-208ENST00000625916 HSPA7P48741 367 aa3.05□□□□□ -1.92
SCN1A-208ENST00000625916 ATP12AP54707 1039 aa3.05□□□□□ -1.92
SCN1A-208ENST00000625916 CYP4A11Q02928 519 aa3.05□□□□□ -1.92
SCN1A-208ENST00000625916 DHX34Q14147 1143 aaKnown RBP3.05□□□□□ -1.92
SCN1A-208ENST00000625916 CALCRLQ16602 461 aa3.05□□□□□ -1.92
SCN1A-208ENST00000625916 MPEG1Q2M385 716 aa3.05□□□□□ -1.92
SCN1A-208ENST00000625916 NCAPH2Q6IBW4 605 aa3.05□□□□□ -1.92
SCN1A-208ENST00000625916 PLEKHA7Q6IQ23 1121 aa3.05□□□□□ -1.92
SCN1A-208ENST00000625916 NEK10Q6ZWH5 1172 aa3.05□□□□□ -1.92
SCN1A-208ENST00000625916 KLHDC8BQ8IXV7 354 aa3.05□□□□□ -1.92
SCN1A-208ENST00000625916 WDSUB1Q8N9V3 476 aa3.05□□□□□ -1.92
SCN1A-208ENST00000625916 ZNF485Q8NCK3 441 aa3.05□□□□□ -1.92
SCN1A-208ENST00000625916 RFWD2Q8NHY2 731 aa3.05□□□□□ -1.92
SCN1A-208ENST00000625916 C2CD4CQ8TF44 421 aa3.05□□□□□ -1.92
SCN1A-208ENST00000625916 MUL1Q969V5 352 aa3.05□□□□□ -1.92
SCN1A-208ENST00000625916 SCMH1Q96GD3 660 aa3.05□□□□□ -1.92
SCN1A-208ENST00000625916 ZNF385AQ96PM9 386 aaKnown RBP3.05□□□□□ -1.92
SCN1A-208ENST00000625916 DDX23Q9BUQ8 820 aaKnown RBP3.05□□□□□ -1.92
SCN1A-208ENST00000625916 NPFFR1Q9GZQ6 430 aa3.05□□□□□ -1.92
SCN1A-208ENST00000625916 TP63Q9H3D4 680 aaPredicted RBP3.05□□□□□ -1.92
SCN1A-208ENST00000625916 UBTD1Q9HAC8 227 aa3.05□□□□□ -1.92
SCN1A-208ENST00000625916 TMEM51Q9NW97 253 aa3.05□□□□□ -1.92
SCN1A-208ENST00000625916 LZTS1Q9Y250 596 aa3.05□□□□□ -1.92
SCN1A-208ENST00000625916 PAM16Q9Y3D7 125 aa3.05□□□□□ -1.92
SCN1A-208ENST00000625916 ADAM18Q9Y3Q7 739 aa3.05□□□□□ -1.92
SCN1A-208ENST00000625916 SNED1Q8TER0 1413 aa3.04□□□□□ -1.92
SCN1A-208ENST00000625916 IGHV4OR15-8A0A075B7B6 117 aa3.04□□□□□ -1.92
SCN1A-208ENST00000625916 HNRNPCL2B2RXH8 293 aa3.04□□□□□ -1.92
SCN1A-208ENST00000625916 NPIPB11E5RHQ5 1161 aa3.04□□□□□ -1.92
SCN1A-208ENST00000625916 CHL1O00533 1208 aa3.04□□□□□ -1.92
SCN1A-208ENST00000625916 SYN3O14994 580 aa3.04□□□□□ -1.92
SCN1A-208ENST00000625916 ASNA1O43681 348 aa3.04□□□□□ -1.92
SCN1A-208ENST00000625916 CCNT1O60563 726 aaKnown RBP3.04□□□□□ -1.92
SCN1A-208ENST00000625916 HEXIM1O94992 359 aaKnown RBP3.04□□□□□ -1.92
SCN1A-208ENST00000625916 MYL3P08590 195 aa3.04□□□□□ -1.92
SCN1A-208ENST00000625916 KCNA5P22460 613 aa3.04□□□□□ -1.92
SCN1A-208ENST00000625916 FMO4P31512 558 aa3.04□□□□□ -1.92
SCN1A-208ENST00000625916 SKIV2L2P42285 1042 aaKnown RBP3.04□□□□□ -1.92
SCN1A-208ENST00000625916 NLRP5P59047 1200 aa3.04□□□□□ -1.92
SCN1A-208ENST00000625916 SAFBQ15424 915 aaKnown RBP eCLIP3.04□□□□□ -1.92
SCN1A-208ENST00000625916 TBRG1Q3YBR2 411 aa3.04□□□□□ -1.92
SCN1A-208ENST00000625916 TMC8Q8IU68 726 aa3.04□□□□□ -1.92
SCN1A-208ENST00000625916 FAM177A1Q8N128 213 aaPredicted RBP3.04□□□□□ -1.92
SCN1A-208ENST00000625916 GPT2Q8TD30 523 aa3.04□□□□□ -1.92
SCN1A-208ENST00000625916 TBC1D22AQ8WUA7 517 aa3.04□□□□□ -1.92
SCN1A-208ENST00000625916 C18orf8Q96DM3 657 aa3.04□□□□□ -1.92
SCN1A-208ENST00000625916 RIPOR3Q96MK2 946 aa3.04□□□□□ -1.92
SCN1A-208ENST00000625916 TEFMQ96QE5 360 aaKnown RBP3.04□□□□□ -1.92
SCN1A-208ENST00000625916 TRMT61BQ9BVS5 477 aaKnown RBP3.04□□□□□ -1.92
SCN1A-208ENST00000625916 ACAD9Q9H845 621 aa3.04□□□□□ -1.92
SCN1A-208ENST00000625916 CLK4Q9HAZ1 481 aaKnown RBP3.04□□□□□ -1.92
SCN1A-208ENST00000625916 SEPSECSQ9HD40 501 aaKnown RBP3.04□□□□□ -1.92
SCN1A-208ENST00000625916 HERC5Q9UII4 1024 aaKnown RBP3.04□□□□□ -1.92
SCN1A-208ENST00000625916 PCDHGB2Q9Y5G2 931 aa3.04□□□□□ -1.92
SCN1A-208ENST00000625916 A0A096LPK6 155 aa3.03□□□□□ -1.92
SCN1A-208ENST00000625916 NPIPB13A6NJU9 1138 aa3.03□□□□□ -1.92
SCN1A-208ENST00000625916 NPIPB5A8MRT5 1133 aa3.03□□□□□ -1.92
SCN1A-208ENST00000625916 EFCAB8A8MWE9 144 aa3.03□□□□□ -1.92
SCN1A-208ENST00000625916 NPIPB4C9JG80 1138 aa3.03□□□□□ -1.92
SCN1A-208ENST00000625916 P2RY10O00398 339 aa3.03□□□□□ -1.92
SCN1A-208ENST00000625916 TIMM23O14925 209 aa3.03□□□□□ -1.92
SCN1A-208ENST00000625916 PMM2O15305 246 aa3.03□□□□□ -1.92
SCN1A-208ENST00000625916 FGF17O60258 216 aa3.03□□□□□ -1.92
SCN1A-208ENST00000625916 PLA2G6O60733 806 aa3.03□□□□□ -1.92
SCN1A-208ENST00000625916 PMS2P2O95744 297 aa3.03□□□□□ -1.92
SCN1A-208ENST00000625916 ATP1A1P05023 1023 aaKnown RBP3.03□□□□□ -1.92
SCN1A-208ENST00000625916 YWHAQP27348 245 aa3.03□□□□□ -1.92
SCN1A-208ENST00000625916 ADORA2A-AS1P86434 159 aa3.03□□□□□ -1.92
SCN1A-208ENST00000625916 ACCSLQ4AC99 568 aa3.03□□□□□ -1.92
SCN1A-208ENST00000625916 C14orf177Q52M58 125 aa3.03□□□□□ -1.92
SCN1A-208ENST00000625916 IZUMO3Q5VZ72 239 aa3.03□□□□□ -1.92
SCN1A-208ENST00000625916 ZNF772Q68DY9 489 aaPredicted RBP3.03□□□□□ -1.92
SCN1A-208ENST00000625916 AADACL2Q6P093 401 aa3.03□□□□□ -1.92
SCN1A-208ENST00000625916 KLHL24Q6TFL4 600 aa3.03□□□□□ -1.92
SCN1A-208ENST00000625916 FOXL2NBQ6ZUU3 175 aa3.03□□□□□ -1.92
SCN1A-208ENST00000625916 MARK2Q7KZI7 788 aaKnown RBP3.03□□□□□ -1.92
SCN1A-208ENST00000625916 SCN4BQ8IWT1 228 aa3.03□□□□□ -1.92
SCN1A-208ENST00000625916 USP13Q92995 863 aaPredicted RBP3.03□□□□□ -1.92
SCN1A-208ENST00000625916 BRD8Q9H0E9 1235 aa3.03□□□□□ -1.92
SCN1A-208ENST00000625916 CERS4Q9HA82 394 aa3.03□□□□□ -1.92
SCN1A-208ENST00000625916 DHDHQ9UQ10 334 aa3.03□□□□□ -1.92
SCN1A-208ENST00000625916 IGKV3D-20A0A0C4DH25 116 aa3.02□□□□□ -1.93
SCN1A-208ENST00000625916 A0A1B0GVY2 172 aa3.02□□□□□ -1.93
SCN1A-208ENST00000625916 FAM90A18PA6NE21 464 aa3.02□□□□□ -1.93
SCN1A-208ENST00000625916 FAM90A16PA6NEW6 464 aa3.02□□□□□ -1.93
SCN1A-208ENST00000625916 FAM90A9PA6NNJ1 464 aa3.02□□□□□ -1.93
SCN1A-208ENST00000625916 FAM90A5PA8MXJ8 464 aa3.02□□□□□ -1.93
SCN1A-208ENST00000625916 FAM72CH0Y354 149 aa3.02□□□□□ -1.93
SCN1A-208ENST00000625916 STRNO43815 780 aa3.02□□□□□ -1.93
SCN1A-208ENST00000625916 EDIL3O43854 480 aa3.02□□□□□ -1.93
SCN1A-208ENST00000625916 FAM90A15PP0C7V4 464 aa3.02□□□□□ -1.93
SCN1A-208ENST00000625916 FAM90A14PP0C7W9 464 aa3.02□□□□□ -1.93
SCN1A-208ENST00000625916 DHRS4L1P0CG22 281 aa3.02□□□□□ -1.93
SCN1A-208ENST00000625916 IGHV4-30-4P0DP06 118 aa3.02□□□□□ -1.93
Retrieved 100 of 20,778 RNA–protein pairs in 20.3 ms