RNA–Protein interactions for RNA: ENST00000618700.4

UPF3A-211, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

TSL 2

Gene UPF3A, Length 1,210 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-211ENST00000618700 AP1B1Q10567 949 aa20.04■□□□□ 0.8
UPF3A-211ENST00000618700 HNRNPDQ14103 355 aaKnown RBP20.04■□□□□ 0.8
UPF3A-211ENST00000618700 LONRF2Q1L5Z9 754 aa20.04■□□□□ 0.8
UPF3A-211ENST00000618700 ACCSLQ4AC99 568 aa20.04■□□□□ 0.8
UPF3A-211ENST00000618700 ADAT2Q7Z6V5 191 aaKnown RBP20.04■□□□□ 0.8
UPF3A-211ENST00000618700 ZC3H18Q86VM9 953 aaKnown RBP20.04■□□□□ 0.8
UPF3A-211ENST00000618700 PLPP6Q8IY26 295 aa20.04■□□□□ 0.8
UPF3A-211ENST00000618700 SLC35B2Q8TB61 432 aa20.04■□□□□ 0.8
UPF3A-211ENST00000618700 ACTRT1Q8TDG2 376 aa20.04■□□□□ 0.8
UPF3A-211ENST00000618700 MAIP1Q8WWC4 291 aa20.04■□□□□ 0.8
UPF3A-211ENST00000618700 PSKH2Q96QS6 385 aa20.04■□□□□ 0.8
UPF3A-211ENST00000618700 FRMD8P1Q9BZ68 369 aaPredicted RBP20.04■□□□□ 0.8
UPF3A-211ENST00000618700 TNKS2Q9H2K2 1166 aa20.04■□□□□ 0.8
UPF3A-211ENST00000618700 PRSS16Q9NQE7 514 aa20.04■□□□□ 0.8
UPF3A-211ENST00000618700 PRMT8Q9NR22 394 aaPredicted RBP20.04■□□□□ 0.8
UPF3A-211ENST00000618700 SEPT3Q9UH03 358 aa20.04■□□□□ 0.8
UPF3A-211ENST00000618700 KCNK1O00180 336 aa20.03■□□□□ 0.8
UPF3A-211ENST00000618700 SYNCRIPO60506 623 aaKnown RBP20.03■□□□□ 0.8
UPF3A-211ENST00000618700 SIN3BO75182 1162 aa20.03■□□□□ 0.8
UPF3A-211ENST00000618700 GSRP00390 522 aa20.03■□□□□ 0.8
UPF3A-211ENST00000618700 TUBB4AP04350 444 aa20.03■□□□□ 0.8
UPF3A-211ENST00000618700 RBP3P10745 1247 aa20.03■□□□□ 0.8
UPF3A-211ENST00000618700 AVPR2P30518 371 aa20.03■□□□□ 0.8
UPF3A-211ENST00000618700 RENBPP51606 427 aa20.03■□□□□ 0.8
UPF3A-211ENST00000618700 CCR3P51677 355 aa20.03■□□□□ 0.8
UPF3A-211ENST00000618700 DGKEP52429 567 aa20.03■□□□□ 0.8
UPF3A-211ENST00000618700 RHOAP61586 193 aa20.03■□□□□ 0.8
UPF3A-211ENST00000618700 SATB1Q01826 763 aa20.03■□□□□ 0.8
UPF3A-211ENST00000618700 ZBTB17Q13105 803 aa20.03■□□□□ 0.8
UPF3A-211ENST00000618700 STARD3Q14849 445 aa20.03■□□□□ 0.8
UPF3A-211ENST00000618700 MARC1Q5VT66 337 aa20.03■□□□□ 0.8
UPF3A-211ENST00000618700 B4GALNT4Q76KP1 1039 aa20.03■□□□□ 0.8
UPF3A-211ENST00000618700 CDKL3Q8IVW4 592 aaPredicted RBP20.03■□□□□ 0.8
UPF3A-211ENST00000618700 DTWD2Q8NBA8 298 aa20.03■□□□□ 0.8
UPF3A-211ENST00000618700 TSEN2Q8NCE0 465 aaKnown RBP20.03■□□□□ 0.8
UPF3A-211ENST00000618700 OR2A12Q8NGT7 310 aa20.03■□□□□ 0.8
UPF3A-211ENST00000618700 NSMCE1Q8WV22 266 aa20.03■□□□□ 0.8
UPF3A-211ENST00000618700 ATG4AQ8WYN0 398 aa20.03■□□□□ 0.8
UPF3A-211ENST00000618700 IL12RB2Q99665 862 aa20.03■□□□□ 0.8
UPF3A-211ENST00000618700 CINPQ9BW66 212 aaPredicted RBP20.03■□□□□ 0.8
UPF3A-211ENST00000618700 TM6SF2Q9BZW4 377 aa20.03■□□□□ 0.8
UPF3A-211ENST00000618700 FBRSQ9HAH7 460 aa20.03■□□□□ 0.8
UPF3A-211ENST00000618700 SMARCAL1Q9NZC9 954 aa20.03■□□□□ 0.8
UPF3A-211ENST00000618700 BCLAF3A2AJT9 711 aaKnown RBP20.02■□□□□ 0.8
UPF3A-211ENST00000618700 H7C0C1 242 aa20.02■□□□□ 0.8
UPF3A-211ENST00000618700 KIF2AO00139 706 aaPredicted RBP20.02■□□□□ 0.8
UPF3A-211ENST00000618700 MUSKO15146 869 aa20.02■□□□□ 0.8
UPF3A-211ENST00000618700 MTSS1O43312 755 aa20.02■□□□□ 0.8
UPF3A-211ENST00000618700 LIASO43766 372 aa20.02■□□□□ 0.8
UPF3A-211ENST00000618700 CCNB1P14635 433 aa20.02■□□□□ 0.8
UPF3A-211ENST00000618700 HSPA9P38646 679 aaKnown RBP20.02■□□□□ 0.8
UPF3A-211ENST00000618700 MMP13P45452 471 aa20.02■□□□□ 0.8
UPF3A-211ENST00000618700 ATP5OP48047 213 aa20.02■□□□□ 0.8
UPF3A-211ENST00000618700 CXCL12P48061 93 aa20.02■□□□□ 0.8
UPF3A-211ENST00000618700 COPAP53621 1224 aa20.02■□□□□ 0.8
UPF3A-211ENST00000618700 ELAVL3Q14576 367 aaKnown RBP20.02■□□□□ 0.8
UPF3A-211ENST00000618700 ZNF235Q14590 738 aa20.02■□□□□ 0.8
UPF3A-211ENST00000618700 DPY19L3Q6ZPD9 716 aa20.02■□□□□ 0.8
UPF3A-211ENST00000618700 CREG2Q8IUH2 290 aa20.02■□□□□ 0.8
UPF3A-211ENST00000618700 OR2AP1Q8NGE2 309 aa20.02■□□□□ 0.8
UPF3A-211ENST00000618700 OR2T3Q8NH03 318 aa20.02■□□□□ 0.8
UPF3A-211ENST00000618700 NKD2Q969F2 451 aaPredicted RBP20.02■□□□□ 0.8
UPF3A-211ENST00000618700 VOPP1Q96AW1 172 aa20.02■□□□□ 0.8
UPF3A-211ENST00000618700 NAP1L3Q99457 506 aaPredicted RBP20.02■□□□□ 0.8
UPF3A-211ENST00000618700 MGME1Q9BQP7 344 aa20.02■□□□□ 0.8
UPF3A-211ENST00000618700 SPATA6Q9NWH7 488 aaPredicted RBP20.02■□□□□ 0.8
UPF3A-211ENST00000618700 AMACRQ9UHK6 382 aa20.02■□□□□ 0.8
UPF3A-211ENST00000618700 ZNF318Q5VUA4 2279 aa20.01■□□□□ 0.79
UPF3A-211ENST00000618700 K7ESF4 209 aa20.01■□□□□ 0.79
UPF3A-211ENST00000618700 ALOX15BO15296 676 aa20.01■□□□□ 0.79
UPF3A-211ENST00000618700 RBL1P28749 1068 aa20.01■□□□□ 0.79
UPF3A-211ENST00000618700 RGRP47804 291 aa20.01■□□□□ 0.79
UPF3A-211ENST00000618700 WASHC5Q12768 1159 aa20.01■□□□□ 0.79
UPF3A-211ENST00000618700 OASLQ15646 514 aaKnown RBP20.01■□□□□ 0.79
UPF3A-211ENST00000618700 CCNG2Q16589 344 aa20.01■□□□□ 0.79
UPF3A-211ENST00000618700 CARD16Q5EG05 197 aa20.01■□□□□ 0.79
UPF3A-211ENST00000618700 ALG1LQ6GMV1 187 aa20.01■□□□□ 0.79
UPF3A-211ENST00000618700 STK40Q8N2I9 435 aa20.01■□□□□ 0.79
UPF3A-211ENST00000618700 PGBD5Q8N414 524 aa20.01■□□□□ 0.79
UPF3A-211ENST00000618700 PRELID2Q8N945 189 aa20.01■□□□□ 0.79
UPF3A-211ENST00000618700 C1orf54Q8WWF1 131 aa20.01■□□□□ 0.79
UPF3A-211ENST00000618700 HTR3CQ8WXA8 447 aa20.01■□□□□ 0.79
UPF3A-211ENST00000618700 EXOC2Q96KP1 924 aa20.01■□□□□ 0.79
UPF3A-211ENST00000618700 CCDC114Q96M63 670 aa20.01■□□□□ 0.79
UPF3A-211ENST00000618700 GDAP1L1Q96MZ0 367 aa20.01■□□□□ 0.79
UPF3A-211ENST00000618700 FAM129BQ96TA1 746 aa20.01■□□□□ 0.79
UPF3A-211ENST00000618700 RSPH9Q9H1X1 276 aaPredicted RBP20.01■□□□□ 0.79
UPF3A-211ENST00000618700 C10orf88Q9H8K7 445 aa20.01■□□□□ 0.79
UPF3A-211ENST00000618700 POLMQ9NP87 494 aaPredicted RBP20.01■□□□□ 0.79
UPF3A-211ENST00000618700 DNPEPQ9ULA0 475 aa20.01■□□□□ 0.79
UPF3A-211ENST00000618700 TCRBV21S2A2A0A5A6 115 aa20■□□□□ 0.79
UPF3A-211ENST00000618700 ZNF189O75820 626 aaPredicted RBP20■□□□□ 0.79
UPF3A-211ENST00000618700 IGSF6O95976 241 aa20■□□□□ 0.79
UPF3A-211ENST00000618700 JCHAINP01591 159 aa20■□□□□ 0.79
UPF3A-211ENST00000618700 HLA-DQB2P05538 268 aa20■□□□□ 0.79
UPF3A-211ENST00000618700 TDGF1P13385 188 aa20■□□□□ 0.79
UPF3A-211ENST00000618700 CR2P20023 1033 aa20■□□□□ 0.79
UPF3A-211ENST00000618700 PTPN3P26045 913 aa20■□□□□ 0.79
UPF3A-211ENST00000618700 CSNK1DP48730 415 aa20■□□□□ 0.79
UPF3A-211ENST00000618700 CCNHP51946 323 aaPredicted RBP20■□□□□ 0.79
Retrieved 100 of 20,778 RNA–protein pairs in 32.1 ms