RNA–Protein interactions for RNA: ENST00000611852.4

CCDC28A-202, Transcript of coiled-coil domain containing 28A, humanhuman

TSL 1 (best) BASIC

Gene CCDC28A, Length 1,505 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28A-202ENST00000611852 RFTN1Q14699 578 aaPredicted RBP16.82■□□□□ 0.28
CCDC28A-202ENST00000611852 LLGL1Q15334 1064 aa16.82■□□□□ 0.28
CCDC28A-202ENST00000611852 PLK5Q496M5 336 aa16.82■□□□□ 0.28
CCDC28A-202ENST00000611852 TTC31Q49AM3 519 aaPredicted RBP16.82■□□□□ 0.28
CCDC28A-202ENST00000611852 TFDP3Q5H9I0 405 aa16.82■□□□□ 0.28
CCDC28A-202ENST00000611852 PRR23BQ6ZRT6 265 aa16.82■□□□□ 0.28
CCDC28A-202ENST00000611852 KBTBD6Q86V97 674 aa16.82■□□□□ 0.28
CCDC28A-202ENST00000611852 CCDC50Q8IVM0 306 aa16.82■□□□□ 0.28
CCDC28A-202ENST00000611852 PIP4K2CQ8TBX8 421 aa16.82■□□□□ 0.28
CCDC28A-202ENST00000611852 ZC3H10Q96K80 434 aaKnown RBP16.82■□□□□ 0.28
CCDC28A-202ENST00000611852 ZNF599Q96NL3 588 aa16.82■□□□□ 0.28
CCDC28A-202ENST00000611852 LHX3Q9UBR4 397 aa16.82■□□□□ 0.28
CCDC28A-202ENST00000611852 SPAG17Q6Q759 2223 aa16.82■□□□□ 0.28
CCDC28A-202ENST00000611852 hCG_1818297A0A087WSY0 165 aa16.81■□□□□ 0.28
CCDC28A-202ENST00000611852 ZFXP17010 805 aaPredicted RBP16.81■□□□□ 0.28
CCDC28A-202ENST00000611852 C5AR1P21730 350 aa16.81■□□□□ 0.28
CCDC28A-202ENST00000611852 METAP1P53582 386 aa16.81■□□□□ 0.28
CCDC28A-202ENST00000611852 COPS2P61201 443 aa16.81■□□□□ 0.28
CCDC28A-202ENST00000611852 DYNLT1P63172 113 aa16.81■□□□□ 0.28
CCDC28A-202ENST00000611852 ADCY2Q08462 1091 aa16.81■□□□□ 0.28
CCDC28A-202ENST00000611852 TFDP2Q14188 446 aa16.81■□□□□ 0.28
CCDC28A-202ENST00000611852 PPP2R5EQ16537 467 aa16.81■□□□□ 0.28
CCDC28A-202ENST00000611852 ATXN7L2Q5T6C5 722 aaPredicted RBP16.81■□□□□ 0.28
CCDC28A-202ENST00000611852 TMCO4Q5TGY1 634 aa16.81■□□□□ 0.28
CCDC28A-202ENST00000611852 FAM46CQ5VWP2 391 aa16.81■□□□□ 0.28
CCDC28A-202ENST00000611852 USP30Q70CQ3 517 aa16.81■□□□□ 0.28
CCDC28A-202ENST00000611852 C11orf74Q86VG3 221 aa16.81■□□□□ 0.28
CCDC28A-202ENST00000611852 AADATQ8N5Z0 425 aa16.81■□□□□ 0.28
CCDC28A-202ENST00000611852 TMIEQ8NEW7 156 aa16.81■□□□□ 0.28
CCDC28A-202ENST00000611852 GRIN3AQ8TCU5 1115 aa16.81■□□□□ 0.28
CCDC28A-202ENST00000611852 NKD2Q969F2 451 aaPredicted RBP16.81■□□□□ 0.28
CCDC28A-202ENST00000611852 HES6Q96HZ4 224 aa16.81■□□□□ 0.28
CCDC28A-202ENST00000611852 HEPHQ9BQS7 1158 aa16.81■□□□□ 0.28
CCDC28A-202ENST00000611852 DUSP15Q9H1R2 295 aaPredicted RBP16.81■□□□□ 0.28
CCDC28A-202ENST00000611852 WSB2Q9NYS7 404 aaPredicted RBP16.81■□□□□ 0.28
CCDC28A-202ENST00000611852 SERGEFQ9UGK8 458 aa16.81■□□□□ 0.28
CCDC28A-202ENST00000611852 IL36AQ9UHA7 158 aa16.81■□□□□ 0.28
CCDC28A-202ENST00000611852 HEY1Q9Y5J3 304 aa16.81■□□□□ 0.28
CCDC28A-202ENST00000611852 WASF2Q9Y6W5 498 aa16.81■□□□□ 0.28
CCDC28A-202ENST00000611852 GPR179Q6PRD1 2367 aa16.81■□□□□ 0.28
CCDC28A-202ENST00000611852 SDK1Q7Z5N4 2213 aa16.81■□□□□ 0.28
CCDC28A-202ENST00000611852 C1QTNF3-AMACRE9PGA6 284 aa16.8■□□□□ 0.28
CCDC28A-202ENST00000611852 RNF103O00237 685 aa16.8■□□□□ 0.28
CCDC28A-202ENST00000611852 DDX3YO15523 660 aaKnown RBP16.8■□□□□ 0.28
CCDC28A-202ENST00000611852 CST8O60676 142 aa16.8■□□□□ 0.28
CCDC28A-202ENST00000611852 PRNPP04156 253 aa16.8■□□□□ 0.28
CCDC28A-202ENST00000611852 MX2P20592 715 aa16.8■□□□□ 0.28
CCDC28A-202ENST00000611852 CD6P30203 668 aa16.8■□□□□ 0.28
CCDC28A-202ENST00000611852 OXTRP30559 389 aa16.8■□□□□ 0.28
CCDC28A-202ENST00000611852 SLC10A7Q0GE19 358 aa16.8■□□□□ 0.28
CCDC28A-202ENST00000611852 LBRQ14739 615 aaKnown RBP16.8■□□□□ 0.28
CCDC28A-202ENST00000611852 LPAL2Q16609 132 aa16.8■□□□□ 0.28
CCDC28A-202ENST00000611852 KAZNQ674X7 775 aa16.8■□□□□ 0.28
CCDC28A-202ENST00000611852 NPNTQ6UXI9 565 aa16.8■□□□□ 0.28
CCDC28A-202ENST00000611852 SLC36A4Q6YBV0 504 aa16.8■□□□□ 0.28
CCDC28A-202ENST00000611852 UBL4BQ8N7F7 174 aa16.8■□□□□ 0.28
CCDC28A-202ENST00000611852 TSEN2Q8NCE0 465 aaKnown RBP16.8■□□□□ 0.28
CCDC28A-202ENST00000611852 OR6K2Q8NGY2 324 aa16.8■□□□□ 0.28
CCDC28A-202ENST00000611852 VOPP1Q96AW1 172 aa16.8■□□□□ 0.28
CCDC28A-202ENST00000611852 TOE1Q96GM8 510 aaKnown RBP16.8■□□□□ 0.28
CCDC28A-202ENST00000611852 GDAP1L1Q96MZ0 367 aa16.8■□□□□ 0.28
CCDC28A-202ENST00000611852 TSGA13Q96PP4 275 aa16.8■□□□□ 0.28
CCDC28A-202ENST00000611852 CINPQ9BW66 212 aaPredicted RBP16.8■□□□□ 0.28
CCDC28A-202ENST00000611852 FBXL12Q9NXK8 326 aa16.8■□□□□ 0.28
CCDC28A-202ENST00000611852 SMG5Q9UPR3 1016 aaKnown RBP16.8■□□□□ 0.28
CCDC28A-202ENST00000611852 SHROOM3Q8TF72 1996 aa16.8■□□□□ 0.28
CCDC28A-202ENST00000611852 NUMA1Q14980 2115 aa16.8■□□□□ 0.28
CCDC28A-202ENST00000611852 A0A1W2PP55 124 aa16.8■□□□□ 0.28
CCDC28A-202ENST00000611852 MAP3K13O43283 966 aa16.8■□□□□ 0.28
CCDC28A-202ENST00000611852 LEFTY1O75610 366 aa16.8■□□□□ 0.28
CCDC28A-202ENST00000611852 POP4O95707 220 aaKnown RBP16.8■□□□□ 0.28
CCDC28A-202ENST00000611852 IGSF6O95976 241 aa16.8■□□□□ 0.28
CCDC28A-202ENST00000611852 LMNAP02545 664 aaKnown RBP16.8■□□□□ 0.28
CCDC28A-202ENST00000611852 PYGMP11217 842 aa16.8■□□□□ 0.28
CCDC28A-202ENST00000611852 GKP32189 559 aa16.8■□□□□ 0.28
CCDC28A-202ENST00000611852 DRD3P35462 400 aa16.8■□□□□ 0.28
CCDC28A-202ENST00000611852 RGRP47804 291 aa16.8■□□□□ 0.28
CCDC28A-202ENST00000611852 MYLK3Q32MK0 819 aa16.8■□□□□ 0.28
CCDC28A-202ENST00000611852 POM121L1PQ3SYA9 428 aa16.8■□□□□ 0.28
CCDC28A-202ENST00000611852 ARSIQ5FYB1 569 aa16.8■□□□□ 0.28
CCDC28A-202ENST00000611852 PMS2CLQ68D20 193 aa16.8■□□□□ 0.28
CCDC28A-202ENST00000611852 FAM124AQ86V42 546 aa16.8■□□□□ 0.28
CCDC28A-202ENST00000611852 RYBPQ8N488 228 aaPredicted RBP16.8■□□□□ 0.28
CCDC28A-202ENST00000611852 UBE2Q2Q8WVN8 375 aa16.8■□□□□ 0.28
CCDC28A-202ENST00000611852 HDAC11Q96DB2 347 aa16.8■□□□□ 0.28
CCDC28A-202ENST00000611852 EXOC2Q96KP1 924 aa16.8■□□□□ 0.28
CCDC28A-202ENST00000611852 ALS2CR12Q96Q35 445 aa16.8■□□□□ 0.28
CCDC28A-202ENST00000611852 PSKH2Q96QS6 385 aa16.8■□□□□ 0.28
CCDC28A-202ENST00000611852 OMDQ99983 421 aa16.8■□□□□ 0.28
CCDC28A-202ENST00000611852 HEMGNQ9BXL5 484 aa16.8■□□□□ 0.28
CCDC28A-202ENST00000611852 ZDHHC6Q9H6R6 413 aa16.8■□□□□ 0.28
CCDC28A-202ENST00000611852 SEPT3Q9UH03 358 aa16.8■□□□□ 0.28
CCDC28A-202ENST00000611852 EFR3BQ9Y2G0 817 aa16.8■□□□□ 0.28
CCDC28A-202ENST00000611852 KPNA3O00505 521 aaPredicted RBP16.79■□□□□ 0.28
CCDC28A-202ENST00000611852 KRIT1O00522 736 aa16.79■□□□□ 0.28
CCDC28A-202ENST00000611852 MUSKO15146 869 aa16.79■□□□□ 0.28
CCDC28A-202ENST00000611852 RNASEH2AO75792 299 aaKnown RBP16.79■□□□□ 0.28
CCDC28A-202ENST00000611852 TGM2P21980 687 aa16.79■□□□□ 0.28
CCDC28A-202ENST00000611852 CCNCP24863 283 aa16.79■□□□□ 0.28
CCDC28A-202ENST00000611852 ACSL1P33121 698 aa16.79■□□□□ 0.28
Retrieved 100 of 20,778 RNA–protein pairs in 25.9 ms