RNA–Protein interactions for RNA: ENST00000587988.5

SMARCA4-213, Transcript of SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4, humanhuman

TSL 2

Gene SMARCA4, Length 552 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCA4-213ENST00000587988 PCDH20Q8N6Y1 951 aaKnown RBP10.88□□□□□ -0.67
SMARCA4-213ENST00000587988 DTWD2Q8NBA8 298 aa10.88□□□□□ -0.67
SMARCA4-213ENST00000587988 TTC13Q8NBP0 860 aa10.88□□□□□ -0.67
SMARCA4-213ENST00000587988 CHST14Q8NCH0 376 aa10.88□□□□□ -0.67
SMARCA4-213ENST00000587988 OR6K2Q8NGY2 324 aa10.88□□□□□ -0.67
SMARCA4-213ENST00000587988 SLC35B2Q8TB61 432 aa10.88□□□□□ -0.67
SMARCA4-213ENST00000587988 ACTRT1Q8TDG2 376 aa10.88□□□□□ -0.67
SMARCA4-213ENST00000587988 CASKIN2Q8WXE0 1202 aa10.88□□□□□ -0.67
SMARCA4-213ENST00000587988 FATE1Q969F0 183 aa10.88□□□□□ -0.67
SMARCA4-213ENST00000587988 VOPP1Q96AW1 172 aa10.88□□□□□ -0.67
SMARCA4-213ENST00000587988 ISG20Q96AZ6 181 aaKnown RBP10.88□□□□□ -0.67
SMARCA4-213ENST00000587988 CAPZA3Q96KX2 299 aa10.88□□□□□ -0.67
SMARCA4-213ENST00000587988 NSMCE3Q96MG7 304 aa10.88□□□□□ -0.67
SMARCA4-213ENST00000587988 QKIQ96PU8 341 aaKnown RBP eCLIP10.88□□□□□ -0.67
SMARCA4-213ENST00000587988 HHIPQ96QV1 700 aa10.88□□□□□ -0.67
SMARCA4-213ENST00000587988 FAM129BQ96TA1 746 aa10.88□□□□□ -0.67
SMARCA4-213ENST00000587988 IER2Q9BTL4 223 aa10.88□□□□□ -0.67
SMARCA4-213ENST00000587988 CINPQ9BW66 212 aaPredicted RBP10.88□□□□□ -0.67
SMARCA4-213ENST00000587988 CEP41Q9BYV8 373 aa10.88□□□□□ -0.67
SMARCA4-213ENST00000587988 MKRN2Q9H000 416 aaKnown RBP10.88□□□□□ -0.67
SMARCA4-213ENST00000587988 BRD8Q9H0E9 1235 aa10.88□□□□□ -0.67
SMARCA4-213ENST00000587988 NT5MQ9NPB1 228 aa10.88□□□□□ -0.67
SMARCA4-213ENST00000587988 RBM22Q9NW64 420 aaKnown RBP eCLIP10.88□□□□□ -0.67
SMARCA4-213ENST00000587988 SEPT10Q9P0V9 454 aa10.88□□□□□ -0.67
SMARCA4-213ENST00000587988 DNPEPQ9ULA0 475 aa10.88□□□□□ -0.67
SMARCA4-213ENST00000587988 SLC8A2Q9UPR5 921 aa10.88□□□□□ -0.67
SMARCA4-213ENST00000587988 CACNA1IQ9P0X4 2223 aa10.87□□□□□ -0.67
SMARCA4-213ENST00000587988 TCRBV21S2A2A0A5A6 115 aa10.87□□□□□ -0.67
SMARCA4-213ENST00000587988 BCLAF3A2AJT9 711 aaKnown RBP10.87□□□□□ -0.67
SMARCA4-213ENST00000587988 K7ESF4 209 aa10.87□□□□□ -0.67
SMARCA4-213ENST00000587988 PDE2AO00408 941 aaPredicted RBP10.87□□□□□ -0.67
SMARCA4-213ENST00000587988 MCF2LO15068 1137 aa10.87□□□□□ -0.67
SMARCA4-213ENST00000587988 LIASO43766 372 aa10.87□□□□□ -0.67
SMARCA4-213ENST00000587988 GSRP00390 522 aa10.87□□□□□ -0.67
SMARCA4-213ENST00000587988 HLA-DQB2P05538 268 aa10.87□□□□□ -0.67
SMARCA4-213ENST00000587988 GABRG2P18507 467 aa10.87□□□□□ -0.67
SMARCA4-213ENST00000587988 PTPN3P26045 913 aa10.87□□□□□ -0.67
SMARCA4-213ENST00000587988 GKP32189 559 aa10.87□□□□□ -0.67
SMARCA4-213ENST00000587988 MMP13P45452 471 aa10.87□□□□□ -0.67
SMARCA4-213ENST00000587988 PXNP49023 591 aaPredicted RBP10.87□□□□□ -0.67
SMARCA4-213ENST00000587988 RENBPP51606 427 aa10.87□□□□□ -0.67
SMARCA4-213ENST00000587988 CCR3P51677 355 aa10.87□□□□□ -0.67
SMARCA4-213ENST00000587988 DGKEP52429 567 aa10.87□□□□□ -0.67
SMARCA4-213ENST00000587988 RHOAP61586 193 aa10.87□□□□□ -0.67
SMARCA4-213ENST00000587988 SNRPD1P62314 119 aaKnown RBP10.87□□□□□ -0.67
SMARCA4-213ENST00000587988 IFI35P80217 286 aaPredicted RBP10.87□□□□□ -0.67
SMARCA4-213ENST00000587988 WASHC5Q12768 1159 aa10.87□□□□□ -0.67
SMARCA4-213ENST00000587988 ZNF235Q14590 738 aa10.87□□□□□ -0.67
SMARCA4-213ENST00000587988 STARD3Q14849 445 aa10.87□□□□□ -0.67
SMARCA4-213ENST00000587988 CARD16Q5EG05 197 aa10.87□□□□□ -0.67
SMARCA4-213ENST00000587988 DARS2Q6PI48 645 aaKnown RBP10.87□□□□□ -0.67
SMARCA4-213ENST00000587988 TSSK4Q6SA08 328 aa10.87□□□□□ -0.67
SMARCA4-213ENST00000587988 METTL3Q86U44 580 aaKnown RBP10.87□□□□□ -0.67
SMARCA4-213ENST00000587988 C1orf210Q8IVY1 113 aa10.87□□□□□ -0.67
SMARCA4-213ENST00000587988 CNTD1Q8N815 330 aa10.87□□□□□ -0.67
SMARCA4-213ENST00000587988 PRELID2Q8N945 189 aa10.87□□□□□ -0.67
SMARCA4-213ENST00000587988 OR2AP1Q8NGE2 309 aa10.87□□□□□ -0.67
SMARCA4-213ENST00000587988 NSMCE1Q8WV22 266 aa10.87□□□□□ -0.67
SMARCA4-213ENST00000587988 MAIP1Q8WWC4 291 aa10.87□□□□□ -0.67
SMARCA4-213ENST00000587988 HTR3CQ8WXA8 447 aa10.87□□□□□ -0.67
SMARCA4-213ENST00000587988 PSKH2Q96QS6 385 aa10.87□□□□□ -0.67
SMARCA4-213ENST00000587988 IL12RB2Q99665 862 aa10.87□□□□□ -0.67
SMARCA4-213ENST00000587988 TMEM121Q9BTD3 319 aa10.87□□□□□ -0.67
SMARCA4-213ENST00000587988 LRFN3Q9BTN0 628 aa10.87□□□□□ -0.67
SMARCA4-213ENST00000587988 AP1M1Q9BXS5 423 aa10.87□□□□□ -0.67
SMARCA4-213ENST00000587988 USP29Q9HBJ7 922 aa10.87□□□□□ -0.67
SMARCA4-213ENST00000587988 HECAQ9UBI9 543 aaPredicted RBP10.87□□□□□ -0.67
SMARCA4-213ENST00000587988 SEPT3Q9UH03 358 aa10.87□□□□□ -0.67
SMARCA4-213ENST00000587988 EVLQ9UI08 416 aaPredicted RBP10.87□□□□□ -0.67
SMARCA4-213ENST00000587988 SARDHQ9UL12 918 aa10.87□□□□□ -0.67
SMARCA4-213ENST00000587988 WASF2Q9Y6W5 498 aa10.87□□□□□ -0.67
SMARCA4-213ENST00000587988 PGRMC1O00264 195 aaKnown RBP10.86□□□□□ -0.67
SMARCA4-213ENST00000587988 KCNN4O15554 427 aa10.86□□□□□ -0.67
SMARCA4-213ENST00000587988 PAPSS2O95340 614 aaPredicted RBP10.86□□□□□ -0.67
SMARCA4-213ENST00000587988 NDUFV2P19404 249 aa10.86□□□□□ -0.67
SMARCA4-213ENST00000587988 CR2P20023 1033 aa10.86□□□□□ -0.67
SMARCA4-213ENST00000587988 CHRNA3P32297 505 aa10.86□□□□□ -0.67
SMARCA4-213ENST00000587988 CD68P34810 354 aaPredicted RBP10.86□□□□□ -0.67
SMARCA4-213ENST00000587988 CCNHP51946 323 aaPredicted RBP10.86□□□□□ -0.67
SMARCA4-213ENST00000587988 METAP1P53582 386 aa10.86□□□□□ -0.67
SMARCA4-213ENST00000587988 GDF10P55107 478 aa10.86□□□□□ -0.67
SMARCA4-213ENST00000587988 RPS14P62263 151 aaKnown RBP10.86□□□□□ -0.67
SMARCA4-213ENST00000587988 DMWDQ09019 674 aa10.86□□□□□ -0.67
SMARCA4-213ENST00000587988 IHHQ14623 411 aa10.86□□□□□ -0.67
SMARCA4-213ENST00000587988 OASLQ15646 514 aaKnown RBP10.86□□□□□ -0.67
SMARCA4-213ENST00000587988 CCNG2Q16589 344 aa10.86□□□□□ -0.67
SMARCA4-213ENST00000587988 KCTD19Q17RG1 926 aaPredicted RBP10.86□□□□□ -0.67
SMARCA4-213ENST00000587988 MYLK3Q32MK0 819 aa10.86□□□□□ -0.67
SMARCA4-213ENST00000587988 TEX44Q53QW1 395 aa10.86□□□□□ -0.67
SMARCA4-213ENST00000587988 ARSIQ5FYB1 569 aa10.86□□□□□ -0.67
SMARCA4-213ENST00000587988 HEATR6Q6AI08 1181 aaKnown RBP10.86□□□□□ -0.67
SMARCA4-213ENST00000587988 SRLQ86TD4 932 aa10.86□□□□□ -0.67
SMARCA4-213ENST00000587988 CACUL1Q86Y37 369 aa10.86□□□□□ -0.67
SMARCA4-213ENST00000587988 TMPRSS6Q8IU80 811 aa10.86□□□□□ -0.67
SMARCA4-213ENST00000587988 MMAAQ8IVH4 418 aaKnown RBP10.86□□□□□ -0.67
SMARCA4-213ENST00000587988 CDKL3Q8IVW4 592 aaPredicted RBP10.86□□□□□ -0.67
SMARCA4-213ENST00000587988 PLPP6Q8IY26 295 aa10.86□□□□□ -0.67
SMARCA4-213ENST00000587988 RYBPQ8N488 228 aaPredicted RBP10.86□□□□□ -0.67
SMARCA4-213ENST00000587988 ZC3H8Q8N5P1 291 aaKnown RBP eCLIP10.86□□□□□ -0.67
SMARCA4-213ENST00000587988 MDGA1Q8NFP4 955 aa10.86□□□□□ -0.67
Retrieved 100 of 20,778 RNA–protein pairs in 21.2 ms