RNA–Protein interactions for RNA: ENST00000557269.5

SHMT2-227, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 5

Gene SHMT2, Length 576 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-227ENST00000557269 TRMT11Q7Z4G4 463 aaKnown RBP13.03□□□□□ -0.32
SHMT2-227ENST00000557269 STK40Q8N2I9 435 aa13.03□□□□□ -0.32
SHMT2-227ENST00000557269 TTC13Q8NBP0 860 aa13.03□□□□□ -0.32
SHMT2-227ENST00000557269 OR6K2Q8NGY2 324 aa13.03□□□□□ -0.32
SHMT2-227ENST00000557269 CCDC26Q8TAB7 109 aa13.03□□□□□ -0.32
SHMT2-227ENST00000557269 CASKIN2Q8WXE0 1202 aa13.03□□□□□ -0.32
SHMT2-227ENST00000557269 ZNF592Q92610 1267 aa13.03□□□□□ -0.32
SHMT2-227ENST00000557269 ISG20Q96AZ6 181 aaKnown RBP13.03□□□□□ -0.32
SHMT2-227ENST00000557269 IL12RB2Q99665 862 aa13.03□□□□□ -0.32
SHMT2-227ENST00000557269 CEP44Q9C0F1 390 aa13.03□□□□□ -0.32
SHMT2-227ENST00000557269 BRD8Q9H0E9 1235 aa13.03□□□□□ -0.32
SHMT2-227ENST00000557269 USP29Q9HBJ7 922 aa13.03□□□□□ -0.32
SHMT2-227ENST00000557269 RBM22Q9NW64 420 aaKnown RBP eCLIP13.03□□□□□ -0.321e-9■■■■□ 20
SHMT2-227ENST00000557269 SEPT10Q9P0V9 454 aa13.03□□□□□ -0.32
SHMT2-227ENST00000557269 SHROOM3Q8TF72 1996 aa13.03□□□□□ -0.32
SHMT2-227ENST00000557269 BCLAF3A2AJT9 711 aaKnown RBP13.02□□□□□ -0.33
SHMT2-227ENST00000557269 TARSL2A2RTX5 802 aaKnown RBP13.02□□□□□ -0.33
SHMT2-227ENST00000557269 HACD1B0YJ81 288 aa13.02□□□□□ -0.33
SHMT2-227ENST00000557269 K7ESF4 209 aa13.02□□□□□ -0.33
SHMT2-227ENST00000557269 MCF2LO15068 1137 aa13.02□□□□□ -0.33
SHMT2-227ENST00000557269 SYNCRIPO60506 623 aaKnown RBP13.02□□□□□ -0.33
SHMT2-227ENST00000557269 GPR37L1O60883 481 aa13.02□□□□□ -0.33
SHMT2-227ENST00000557269 ATG13O75143 517 aa13.02□□□□□ -0.33
SHMT2-227ENST00000557269 HLA-DQB2P05538 268 aa13.02□□□□□ -0.33
SHMT2-227ENST00000557269 CTSLP07711 333 aa13.02□□□□□ -0.33
SHMT2-227ENST00000557269 PTPN3P26045 913 aa13.02□□□□□ -0.33
SHMT2-227ENST00000557269 METAP1P53582 386 aa13.02□□□□□ -0.33
SHMT2-227ENST00000557269 GDF10P55107 478 aa13.02□□□□□ -0.33
SHMT2-227ENST00000557269 RHOAP61586 193 aa13.02□□□□□ -0.33
SHMT2-227ENST00000557269 ZNF33AQ06730 810 aa13.02□□□□□ -0.33
SHMT2-227ENST00000557269 RFTN1Q14699 578 aaPredicted RBP13.02□□□□□ -0.33
SHMT2-227ENST00000557269 OASLQ15646 514 aaKnown RBP13.02□□□□□ -0.33
SHMT2-227ENST00000557269 CCNG2Q16589 344 aa13.02□□□□□ -0.33
SHMT2-227ENST00000557269 TTC27Q6P3X3 843 aa13.02□□□□□ -0.33
SHMT2-227ENST00000557269 PRUNE1Q86TP1 453 aa13.02□□□□□ -0.33
SHMT2-227ENST00000557269 MAML2Q8IZL2 1156 aaPredicted RBP13.02□□□□□ -0.33
SHMT2-227ENST00000557269 ZC3H8Q8N5P1 291 aaKnown RBP eCLIP13.02□□□□□ -0.33
SHMT2-227ENST00000557269 PCDH20Q8N6Y1 951 aaKnown RBP13.02□□□□□ -0.33
SHMT2-227ENST00000557269 DTWD2Q8NBA8 298 aa13.02□□□□□ -0.33
SHMT2-227ENST00000557269 OR2AP1Q8NGE2 309 aa13.02□□□□□ -0.33
SHMT2-227ENST00000557269 HTR3CQ8WXA8 447 aa13.02□□□□□ -0.33
SHMT2-227ENST00000557269 NKD2Q969F2 451 aaPredicted RBP13.02□□□□□ -0.33
SHMT2-227ENST00000557269 PSKH2Q96QS6 385 aa13.02□□□□□ -0.33
SHMT2-227ENST00000557269 HHIPQ96QV1 700 aa13.02□□□□□ -0.33
SHMT2-227ENST00000557269 TMEM121Q9BTD3 319 aa13.02□□□□□ -0.33
SHMT2-227ENST00000557269 CINPQ9BW66 212 aaPredicted RBP13.02□□□□□ -0.33
SHMT2-227ENST00000557269 MKRN2Q9H000 416 aaKnown RBP13.02□□□□□ -0.33
SHMT2-227ENST00000557269 NT5MQ9NPB1 228 aa13.02□□□□□ -0.33
SHMT2-227ENST00000557269 SPATA6Q9NWH7 488 aaPredicted RBP13.02□□□□□ -0.33
SHMT2-227ENST00000557269 SEPT3Q9UH03 358 aa13.02□□□□□ -0.33
SHMT2-227ENST00000557269 SUN2Q9UH99 717 aa13.02□□□□□ -0.33
SHMT2-227ENST00000557269 TCRBV21S2A2A0A5A6 115 aa13.01□□□□□ -0.33
SHMT2-227ENST00000557269 PRR33A8MZF0 331 aa13.01□□□□□ -0.33
SHMT2-227ENST00000557269 DLL1O00548 723 aa13.01□□□□□ -0.33
SHMT2-227ENST00000557269 KCNN4O15554 427 aa13.01□□□□□ -0.33
SHMT2-227ENST00000557269 GSRP00390 522 aa13.01□□□□□ -0.33
SHMT2-227ENST00000557269 GABRG2P18507 467 aa13.01□□□□□ -0.33
SHMT2-227ENST00000557269 CR2P20023 1033 aa13.01□□□□□ -0.33
SHMT2-227ENST00000557269 CD68P34810 354 aaPredicted RBP13.01□□□□□ -0.33
SHMT2-227ENST00000557269 MAGEA9P43362 315 aa13.01□□□□□ -0.33
SHMT2-227ENST00000557269 KCNJ1P48048 391 aa13.01□□□□□ -0.33
SHMT2-227ENST00000557269 CXCL12P48061 93 aa13.01□□□□□ -0.33
SHMT2-227ENST00000557269 PXNP49023 591 aaPredicted RBP13.01□□□□□ -0.33
SHMT2-227ENST00000557269 RENBPP51606 427 aa13.01□□□□□ -0.33
SHMT2-227ENST00000557269 CCNHP51946 323 aaPredicted RBP13.01□□□□□ -0.33
SHMT2-227ENST00000557269 DMWDQ09019 674 aa13.01□□□□□ -0.33
SHMT2-227ENST00000557269 NIPAL4Q0D2K0 466 aa13.01□□□□□ -0.33
SHMT2-227ENST00000557269 ZNF235Q14590 738 aa13.01□□□□□ -0.33
SHMT2-227ENST00000557269 E2F5Q15329 346 aa13.01□□□□□ -0.33
SHMT2-227ENST00000557269 MYLK3Q32MK0 819 aa13.01□□□□□ -0.33
SHMT2-227ENST00000557269 TSSK4Q6SA08 328 aa13.01□□□□□ -0.33
SHMT2-227ENST00000557269 MAMSTRQ6ZN01 415 aa13.01□□□□□ -0.33
SHMT2-227ENST00000557269 CACUL1Q86Y37 369 aa13.01□□□□□ -0.33
SHMT2-227ENST00000557269 CDKL3Q8IVW4 592 aaPredicted RBP13.01□□□□□ -0.33
SHMT2-227ENST00000557269 ZNF567Q8N184 647 aa13.01□□□□□ -0.33
SHMT2-227ENST00000557269 FAM71DQ8N9W8 422 aa13.01□□□□□ -0.33
SHMT2-227ENST00000557269 NSMCE1Q8WV22 266 aa13.01□□□□□ -0.33
SHMT2-227ENST00000557269 AGAP3Q96P47 875 aa13.01□□□□□ -0.33
SHMT2-227ENST00000557269 MGME1Q9BQP7 344 aa13.01□□□□□ -0.33
SHMT2-227ENST00000557269 RSPH9Q9H1X1 276 aaPredicted RBP13.01□□□□□ -0.33
SHMT2-227ENST00000557269 HECAQ9UBI9 543 aaPredicted RBP13.01□□□□□ -0.33
SHMT2-227ENST00000557269 EVLQ9UI08 416 aaPredicted RBP13.01□□□□□ -0.33
SHMT2-227ENST00000557269 SARDHQ9UL12 918 aa13.01□□□□□ -0.33
SHMT2-227ENST00000557269 SLC8A2Q9UPR5 921 aa13.01□□□□□ -0.33
SHMT2-227ENST00000557269 ATP8A1Q9Y2Q0 1164 aa13.01□□□□□ -0.33
SHMT2-227ENST00000557269 CKAP5Q14008 2032 aa13.01□□□□□ -0.33
SHMT2-227ENST00000557269 ESPNB1AK53 854 aa13□□□□□ -0.33
SHMT2-227ENST00000557269 KRIT1O00522 736 aa13□□□□□ -0.33
SHMT2-227ENST00000557269 ZBTB24O43167 697 aaPredicted RBP13□□□□□ -0.33
SHMT2-227ENST00000557269 ZNF500O60304 480 aaPredicted RBP13□□□□□ -0.33
SHMT2-227ENST00000557269 URI1O94763 535 aaPredicted RBP13□□□□□ -0.33
SHMT2-227ENST00000557269 TDGF1P13385 188 aa13□□□□□ -0.33
SHMT2-227ENST00000557269 ETS1P14921 441 aa13□□□□□ -0.33
SHMT2-227ENST00000557269 NDUFV2P19404 249 aa13□□□□□ -0.33
SHMT2-227ENST00000557269 CHRNA3P32297 505 aa13□□□□□ -0.33
SHMT2-227ENST00000557269 SCNN1BP51168 640 aa13□□□□□ -0.33
SHMT2-227ENST00000557269 DGKEP52429 567 aa13□□□□□ -0.33
SHMT2-227ENST00000557269 RPS14P62263 151 aaKnown RBP13□□□□□ -0.33
SHMT2-227ENST00000557269 SNRPD1P62314 119 aaKnown RBP13□□□□□ -0.33
SHMT2-227ENST00000557269 DSC2Q02487 901 aa13□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 26.7 ms