RNA–Protein interactions for RNA: ENST00000554467.5

SHMT2-212, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 2

Gene SHMT2, Length 3,416 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-212ENST00000554467 IPO11Q9UI26 975 aaKnown RBP11.88□□□□□ -0.51
SHMT2-212ENST00000554467 CHKBQ9Y259 395 aa11.88□□□□□ -0.51
SHMT2-212ENST00000554467 ACTL7AQ9Y615 435 aa11.88□□□□□ -0.51
SHMT2-212ENST00000554467 FNDC1Q4ZHG4 1894 aaPredicted RBP11.87□□□□□ -0.51
SHMT2-212ENST00000554467 CHD9Q3L8U1 2897 aa11.87□□□□□ -0.51
SHMT2-212ENST00000554467 KRT38O76015 456 aa11.87□□□□□ -0.51
SHMT2-212ENST00000554467 GJB5O95377 273 aa11.87□□□□□ -0.51
SHMT2-212ENST00000554467 SEC24AO95486 1093 aa11.87□□□□□ -0.51
SHMT2-212ENST00000554467 ACRP10323 421 aa11.87□□□□□ -0.51
SHMT2-212ENST00000554467 COL6A1P12109 1028 aa11.87□□□□□ -0.51
SHMT2-212ENST00000554467 MLNP12872 115 aa11.87□□□□□ -0.51
SHMT2-212ENST00000554467 SAT1P21673 171 aa11.87□□□□□ -0.51
SHMT2-212ENST00000554467 CA8P35219 290 aa11.87□□□□□ -0.51
SHMT2-212ENST00000554467 NEK3P51956 506 aa11.87□□□□□ -0.51
SHMT2-212ENST00000554467 DEFB103AP81534 67 aa11.87□□□□□ -0.51
SHMT2-212ENST00000554467 OTOAQ7RTW8 1153 aa11.87□□□□□ -0.51
SHMT2-212ENST00000554467 ZNF276Q8N554 614 aa11.87□□□□□ -0.51
SHMT2-212ENST00000554467 SLC25A41Q8N5S1 370 aa11.87□□□□□ -0.51
SHMT2-212ENST00000554467 TLR8Q9NR97 1041 aaKnown RBP11.87□□□□□ -0.51
SHMT2-212ENST00000554467 TMEM39AQ9NV64 488 aa11.87□□□□□ -0.51
SHMT2-212ENST00000554467 C2orf71A6NGG8 1288 aa11.87□□□□□ -0.51
SHMT2-212ENST00000554467 SLC38A8A6NNN8 435 aa11.87□□□□□ -0.51
SHMT2-212ENST00000554467 TPP1O14773 563 aa11.87□□□□□ -0.51
SHMT2-212ENST00000554467 MAGEA11P43364 429 aa11.87□□□□□ -0.51
SHMT2-212ENST00000554467 PRMT2P55345 433 aa11.87□□□□□ -0.51
SHMT2-212ENST00000554467 ZBTB16Q05516 673 aa11.87□□□□□ -0.51
SHMT2-212ENST00000554467 RCN2Q14257 317 aa11.87□□□□□ -0.51
SHMT2-212ENST00000554467 CNPY1Q3B7I2 92 aa11.87□□□□□ -0.51
SHMT2-212ENST00000554467 ITPRIPL1Q6GPH6 555 aa11.87□□□□□ -0.51
SHMT2-212ENST00000554467 PACS1Q6VY07 963 aa11.87□□□□□ -0.51
SHMT2-212ENST00000554467 ZCCHC23Q6ZST2 131 aa11.87□□□□□ -0.51
SHMT2-212ENST00000554467 ANKS3Q6ZW76 656 aa11.87□□□□□ -0.51
SHMT2-212ENST00000554467 BEND5Q7L4P6 421 aa11.87□□□□□ -0.51
SHMT2-212ENST00000554467 SDCCAG8Q86SQ7 713 aaPredicted RBP11.87□□□□□ -0.51
SHMT2-212ENST00000554467 CHSY1Q86X52 802 aa11.87□□□□□ -0.51
SHMT2-212ENST00000554467 PSMG2Q969U7 264 aa11.87□□□□□ -0.51
SHMT2-212ENST00000554467 CERS2Q96G23 380 aa11.87□□□□□ -0.51
SHMT2-212ENST00000554467 CAB39LQ9H9S4 337 aa11.87□□□□□ -0.51
SHMT2-212ENST00000554467 NT5MQ9NPB1 228 aa11.87□□□□□ -0.51
SHMT2-212ENST00000554467 ZNF358Q9NW07 568 aa11.87□□□□□ -0.51
SHMT2-212ENST00000554467 GALNT8Q9NY28 637 aa11.87□□□□□ -0.51
SHMT2-212ENST00000554467 TBC1D4O60343 1298 aa11.86□□□□□ -0.51
SHMT2-212ENST00000554467 ALDOAP04075 364 aaKnown RBP11.86□□□□□ -0.51
SHMT2-212ENST00000554467 IRF1P10914 325 aa11.86□□□□□ -0.51
SHMT2-212ENST00000554467 SLC18A2Q05940 514 aa11.86□□□□□ -0.51
SHMT2-212ENST00000554467 NIPAL4Q0D2K0 466 aa11.86□□□□□ -0.51
SHMT2-212ENST00000554467 SLC10A7Q0GE19 358 aa11.86□□□□□ -0.51
SHMT2-212ENST00000554467 CCDC15Q0P6D6 951 aa11.86□□□□□ -0.51
SHMT2-212ENST00000554467 STEAP4Q687X5 459 aa11.86□□□□□ -0.51
SHMT2-212ENST00000554467 ACVR1CQ8NER5 493 aa11.86□□□□□ -0.51
SHMT2-212ENST00000554467 MRPL9Q9BYD2 267 aaKnown RBP11.86□□□□□ -0.51
SHMT2-212ENST00000554467 CASS4Q9NQ75 786 aa11.86□□□□□ -0.51
SHMT2-212ENST00000554467 GKN1Q9NS71 199 aa11.86□□□□□ -0.51
SHMT2-212ENST00000554467 TRHDEQ9UKU6 1024 aa11.86□□□□□ -0.51
SHMT2-212ENST00000554467 NVLO15381 856 aaKnown RBP11.86□□□□□ -0.51
SHMT2-212ENST00000554467 FGF10O15520 208 aaPredicted RBP11.86□□□□□ -0.51
SHMT2-212ENST00000554467 ACVRL1P37023 503 aa11.86□□□□□ -0.51
SHMT2-212ENST00000554467 COG7P83436 770 aa11.86□□□□□ -0.51
SHMT2-212ENST00000554467 PDE1BQ01064 536 aa11.86□□□□□ -0.51
SHMT2-212ENST00000554467 DLG2Q15700 870 aa11.86□□□□□ -0.51
SHMT2-212ENST00000554467 MUM1Q2TAK8 710 aa11.86□□□□□ -0.51
SHMT2-212ENST00000554467 ANKRD20A4Q4UJ75 823 aa11.86□□□□□ -0.51
SHMT2-212ENST00000554467 NADSYN1Q6IA69 706 aa11.86□□□□□ -0.51
SHMT2-212ENST00000554467 SPPL2BQ8TCT7 592 aa11.86□□□□□ -0.51
SHMT2-212ENST00000554467 SCG3Q8WXD2 468 aaKnown RBP11.86□□□□□ -0.51
SHMT2-212ENST00000554467 APBB2Q92870 758 aa11.86□□□□□ -0.51
SHMT2-212ENST00000554467 MANSC1Q9H8J5 431 aa11.86□□□□□ -0.51
SHMT2-212ENST00000554467 GLOD4Q9HC38 313 aa11.86□□□□□ -0.51
SHMT2-212ENST00000554467 C20orf96Q9NUD7 363 aaPredicted RBP11.86□□□□□ -0.51
SHMT2-212ENST00000554467 TXNDC16Q9P2K2 825 aa11.86□□□□□ -0.51
SHMT2-212ENST00000554467 LNPEPQ9UIQ6 1025 aa11.86□□□□□ -0.51
SHMT2-212ENST00000554467 MATN3O15232 486 aa11.86□□□□□ -0.51
SHMT2-212ENST00000554467 ETV4P43268 484 aa11.86□□□□□ -0.51
SHMT2-212ENST00000554467 SERPINB4P48594 390 aa11.86□□□□□ -0.51
SHMT2-212ENST00000554467 DYNC1I2Q13409 638 aaKnown RBP11.86□□□□□ -0.51
SHMT2-212ENST00000554467 SEPT6Q14141 434 aa11.86□□□□□ -0.51
SHMT2-212ENST00000554467 CES4AQ5XG92 561 aa11.86□□□□□ -0.51
SHMT2-212ENST00000554467 MYLK4Q86YV6 388 aaPredicted RBP11.86□□□□□ -0.51
SHMT2-212ENST00000554467 KBTBD2Q8IY47 623 aa11.86□□□□□ -0.51
SHMT2-212ENST00000554467 CWH43Q9H720 699 aa11.86□□□□□ -0.51
SHMT2-212ENST00000554467 CYP4F11Q9HBI6 524 aa11.86□□□□□ -0.51
SHMT2-212ENST00000554467 IARS2Q9NSE4 1012 aaKnown RBP11.86□□□□□ -0.51
SHMT2-212ENST00000554467 SLC2A6Q9UGQ3 507 aa11.86□□□□□ -0.51
SHMT2-212ENST00000554467 RAD54BQ9Y620 910 aa11.86□□□□□ -0.51
SHMT2-212ENST00000554467 ZCWPW2A0A1B0GU75 182 aa11.85□□□□□ -0.51
SHMT2-212ENST00000554467 MTSS1O43312 755 aa11.85□□□□□ -0.51
SHMT2-212ENST00000554467 EDF1O60869 148 aaKnown RBP11.85□□□□□ -0.51
SHMT2-212ENST00000554467 ALDH1A2O94788 518 aa11.85□□□□□ -0.51
SHMT2-212ENST00000554467 CCNCP24863 283 aa11.85□□□□□ -0.51
SHMT2-212ENST00000554467 HOXC13P31276 330 aa11.85□□□□□ -0.51
SHMT2-212ENST00000554467 MTA1Q13330 715 aa11.85□□□□□ -0.51
SHMT2-212ENST00000554467 IKBKEQ14164 716 aa11.85□□□□□ -0.51
SHMT2-212ENST00000554467 PRPSAP1Q14558 356 aa11.85□□□□□ -0.51
SHMT2-212ENST00000554467 USP41Q3LFD5 358 aa11.85□□□□□ -0.51
SHMT2-212ENST00000554467 LGSNQ5TDP6 509 aa11.85□□□□□ -0.51
SHMT2-212ENST00000554467 MSANTD2Q6P1R3 559 aa11.85□□□□□ -0.51
SHMT2-212ENST00000554467 STRA8Q7Z7C7 330 aa11.85□□□□□ -0.51
SHMT2-212ENST00000554467 SERBP1Q8NC51 408 aaKnown RBP eCLIP11.85□□□□□ -0.51
SHMT2-212ENST00000554467 RFWD2Q8NHY2 731 aa11.85□□□□□ -0.51
SHMT2-212ENST00000554467 IGSF21Q96ID5 467 aa11.85□□□□□ -0.51
Retrieved 100 of 20,778 RNA–protein pairs in 33.1 ms