RNA–Protein interactions for RNA: ENST00000526669.6

CD44-224, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 5 BASIC

Gene CD44, Length 870 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-224ENST00000526669 PHF2O75151 1096 aa13.94□□□□□ -0.18
CD44-224ENST00000526669 SIN3BO75182 1162 aa13.94□□□□□ -0.18
CD44-224ENST00000526669 ZNF821O75541 412 aaPredicted RBP13.94□□□□□ -0.18
CD44-224ENST00000526669 HOXB2P14652 356 aa13.94□□□□□ -0.18
CD44-224ENST00000526669 ETS1P14921 441 aa13.94□□□□□ -0.18
CD44-224ENST00000526669 IFI35P80217 286 aaPredicted RBP13.94□□□□□ -0.18
CD44-224ENST00000526669 SLC20A2Q08357 652 aa13.94□□□□□ -0.18
CD44-224ENST00000526669 ITKQ08881 620 aa13.94□□□□□ -0.18
CD44-224ENST00000526669 C2orf54Q08AI8 447 aa13.94□□□□□ -0.18
CD44-224ENST00000526669 CCNG2Q16589 344 aa13.94□□□□□ -0.18
CD44-224ENST00000526669 MARC1Q5VT66 337 aa13.94□□□□□ -0.18
CD44-224ENST00000526669 SDE2Q6IQ49 451 aa13.94□□□□□ -0.18
CD44-224ENST00000526669 KIAA1211LQ6NV74 962 aa13.94□□□□□ -0.18
CD44-224ENST00000526669 TTC27Q6P3X3 843 aa13.94□□□□□ -0.18
CD44-224ENST00000526669 TRMT11Q7Z4G4 463 aaKnown RBP13.94□□□□□ -0.18
CD44-224ENST00000526669 KLHL7Q8IXQ5 586 aa13.94□□□□□ -0.18
CD44-224ENST00000526669 STK40Q8N2I9 435 aa13.94□□□□□ -0.18
CD44-224ENST00000526669 FAM71DQ8N9W8 422 aa13.94□□□□□ -0.18
CD44-224ENST00000526669 PTPRN2Q92932 1015 aa13.94□□□□□ -0.18
CD44-224ENST00000526669 AGAP3Q96P47 875 aa13.94□□□□□ -0.18
CD44-224ENST00000526669 BRD8Q9H0E9 1235 aa13.94□□□□□ -0.18
CD44-224ENST00000526669 DDX47Q9H0S4 455 aaKnown RBP13.94□□□□□ -0.18
CD44-224ENST00000526669 KLHL8Q9P2G9 620 aaPredicted RBP13.94□□□□□ -0.18
CD44-224ENST00000526669 SEPT3Q9UH03 358 aa13.94□□□□□ -0.18
CD44-224ENST00000526669 EVLQ9UI08 416 aaPredicted RBP13.94□□□□□ -0.18
CD44-224ENST00000526669 MMP17Q9ULZ9 603 aa13.94□□□□□ -0.18
CD44-224ENST00000526669 SLC8A2Q9UPR5 921 aa13.94□□□□□ -0.18
CD44-224ENST00000526669 MRFAP1Q9Y605 127 aa13.94□□□□□ -0.18
CD44-224ENST00000526669 ZNF318Q5VUA4 2279 aa13.93□□□□□ -0.18
CD44-224ENST00000526669 ABCA7Q8IZY2 2146 aa13.93□□□□□ -0.18
CD44-224ENST00000526669 EDDM13A0A1B0GTR0 161 aa13.93□□□□□ -0.18
CD44-224ENST00000526669 IGSF6O95976 241 aa13.93□□□□□ -0.18
CD44-224ENST00000526669 IFNB1P01574 187 aa13.93□□□□□ -0.18
CD44-224ENST00000526669 GKP32189 559 aa13.93□□□□□ -0.18
CD44-224ENST00000526669 COILP38432 576 aaPredicted RBP13.93□□□□□ -0.18
CD44-224ENST00000526669 WASHC5Q12768 1159 aa13.93□□□□□ -0.18
CD44-224ENST00000526669 HNRNPDQ14103 355 aaKnown RBP13.93□□□□□ -0.18
CD44-224ENST00000526669 RFTN1Q14699 578 aaPredicted RBP13.93□□□□□ -0.18
CD44-224ENST00000526669 HNRNPA1L2Q32P51 320 aaKnown RBP13.93□□□□□ -0.18
CD44-224ENST00000526669 INO80DQ53TQ3 878 aaPredicted RBP13.93□□□□□ -0.18
CD44-224ENST00000526669 EOGTQ5NDL2 527 aa13.93□□□□□ -0.18
CD44-224ENST00000526669 TMEM92Q6UXU6 159 aa13.93□□□□□ -0.18
CD44-224ENST00000526669 ZNF567Q8N184 647 aa13.93□□□□□ -0.18
CD44-224ENST00000526669 BBS5Q8N3I7 341 aa13.93□□□□□ -0.18
CD44-224ENST00000526669 SYNPOQ8N3V7 929 aa13.93□□□□□ -0.18
CD44-224ENST00000526669 TAB3Q8N5C8 712 aaPredicted RBP13.93□□□□□ -0.18
CD44-224ENST00000526669 TEX26Q8N6G2 289 aa13.93□□□□□ -0.18
CD44-224ENST00000526669 PCDH20Q8N6Y1 951 aaKnown RBP13.93□□□□□ -0.18
CD44-224ENST00000526669 C12orf50Q8NA57 414 aaPredicted RBP13.93□□□□□ -0.18
CD44-224ENST00000526669 CHST14Q8NCH0 376 aa13.93□□□□□ -0.18
CD44-224ENST00000526669 CCDC110Q8TBZ0 833 aa13.93□□□□□ -0.18
CD44-224ENST00000526669 CASKIN2Q8WXE0 1202 aa13.93□□□□□ -0.18
CD44-224ENST00000526669 NKD2Q969F2 451 aaPredicted RBP13.93□□□□□ -0.18
CD44-224ENST00000526669 PBXIP1Q96AQ6 731 aa13.93□□□□□ -0.18
CD44-224ENST00000526669 CLDN23Q96B33 292 aa13.93□□□□□ -0.18
CD44-224ENST00000526669 IL12RB2Q99665 862 aa13.93□□□□□ -0.18
CD44-224ENST00000526669 GABRG3Q99928 467 aa13.93□□□□□ -0.18
CD44-224ENST00000526669 FRMD8P1Q9BZ68 369 aaPredicted RBP13.93□□□□□ -0.18
CD44-224ENST00000526669 OSBPL6Q9BZF3 934 aa13.93□□□□□ -0.18
CD44-224ENST00000526669 SLC6A17Q9H1V8 727 aa13.93□□□□□ -0.18
CD44-224ENST00000526669 CHRDQ9H2X0 955 aa13.93□□□□□ -0.18
CD44-224ENST00000526669 ZDHHC6Q9H6R6 413 aa13.93□□□□□ -0.18
CD44-224ENST00000526669 USP29Q9HBJ7 922 aa13.93□□□□□ -0.18
CD44-224ENST00000526669 SUN2Q9UH99 717 aa13.93□□□□□ -0.18
CD44-224ENST00000526669 NPC1O15118 1278 aa13.92□□□□□ -0.18
CD44-224ENST00000526669 ZBTB24O43167 697 aaPredicted RBP13.92□□□□□ -0.18
CD44-224ENST00000526669 AOC1P19801 751 aa13.92□□□□□ -0.18
CD44-224ENST00000526669 VASPP50552 380 aaPredicted RBP13.92□□□□□ -0.18
CD44-224ENST00000526669 RENBPP51606 427 aa13.92□□□□□ -0.18
CD44-224ENST00000526669 CCNHP51946 323 aaPredicted RBP13.92□□□□□ -0.18
CD44-224ENST00000526669 SNRPD1P62314 119 aaKnown RBP13.92□□□□□ -0.18
CD44-224ENST00000526669 DSC2Q02487 901 aa13.92□□□□□ -0.18
CD44-224ENST00000526669 ZNF33AQ06730 810 aa13.92□□□□□ -0.18
CD44-224ENST00000526669 CKAP4Q07065 602 aaKnown RBP13.92□□□□□ -0.18
CD44-224ENST00000526669 ENPP2Q13822 863 aa13.92□□□□□ -0.18
CD44-224ENST00000526669 STARD3Q14849 445 aa13.92□□□□□ -0.18
CD44-224ENST00000526669 TRIP13Q15645 432 aaPredicted RBP13.92□□□□□ -0.18
CD44-224ENST00000526669 CYP1B1Q16678 543 aa13.92□□□□□ -0.18
CD44-224ENST00000526669 WHAMMP3Q1A5X7 153 aa13.92□□□□□ -0.18
CD44-224ENST00000526669 TEX44Q53QW1 395 aa13.92□□□□□ -0.18
CD44-224ENST00000526669 CARD16Q5EG05 197 aa13.92□□□□□ -0.18
CD44-224ENST00000526669 C9orf64Q5T6V5 341 aa13.92□□□□□ -0.18
CD44-224ENST00000526669 CCDC137Q6PK04 289 aaKnown RBP13.92□□□□□ -0.18
CD44-224ENST00000526669 DPY19L3Q6ZPD9 716 aa13.92□□□□□ -0.18
CD44-224ENST00000526669 GSTA5Q7RTV2 222 aa13.92□□□□□ -0.18
CD44-224ENST00000526669 SRLQ86TD4 932 aa13.92□□□□□ -0.18
CD44-224ENST00000526669 CNTD1Q8N815 330 aa13.92□□□□□ -0.18
CD44-224ENST00000526669 KDM1BQ8NB78 822 aa13.92□□□□□ -0.18
CD44-224ENST00000526669 GLIS1Q8NBF1 620 aa13.92□□□□□ -0.18
CD44-224ENST00000526669 CCDC26Q8TAB7 109 aa13.92□□□□□ -0.18
CD44-224ENST00000526669 GRIN3AQ8TCU5 1115 aa13.92□□□□□ -0.18
CD44-224ENST00000526669 KCNV2Q8TDN2 545 aa13.92□□□□□ -0.18
CD44-224ENST00000526669 GDAP1L1Q96MZ0 367 aa13.92□□□□□ -0.18
CD44-224ENST00000526669 HHIPQ96QV1 700 aa13.92□□□□□ -0.18
CD44-224ENST00000526669 CEP44Q9C0F1 390 aa13.92□□□□□ -0.18
CD44-224ENST00000526669 PRSS16Q9NQE7 514 aa13.92□□□□□ -0.18
CD44-224ENST00000526669 RNF14Q9UBS8 474 aa13.92□□□□□ -0.18
CD44-224ENST00000526669 SDK1Q7Z5N4 2213 aa13.92□□□□□ -0.18
CD44-224ENST00000526669 SCN8AQ9UQD0 1980 aa13.92□□□□□ -0.18
CD44-224ENST00000526669 GON4LQ3T8J9 2241 aa13.91□□□□□ -0.18
Retrieved 100 of 20,778 RNA–protein pairs in 20.2 ms