RNA–Protein interactions for RNA: ENST00000469054.1

VPS13D-204, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

TSL 3

Gene VPS13D, Length 567 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-204ENST00000469054 FAM86C1Q9NVL1 165 aa12.15□□□□□ -0.46
VPS13D-204ENST00000469054 TRMT1Q9NXH9 659 aaKnown RBP12.15□□□□□ -0.46
VPS13D-204ENST00000469054 USP36Q9P275 1121 aaKnown RBP12.15□□□□□ -0.46
VPS13D-204ENST00000469054 HECAQ9UBI9 543 aaPredicted RBP12.15□□□□□ -0.46
VPS13D-204ENST00000469054 SCML1Q9UN30 329 aa12.15□□□□□ -0.46
VPS13D-204ENST00000469054 INVSQ9Y283 1065 aa12.15□□□□□ -0.46
VPS13D-204ENST00000469054 HEY1Q9Y5J3 304 aa12.15□□□□□ -0.46
VPS13D-204ENST00000469054 C1QTNF3-AMACRE9PGA6 284 aa12.14□□□□□ -0.47
VPS13D-204ENST00000469054 POP4O95707 220 aaKnown RBP12.14□□□□□ -0.47
VPS13D-204ENST00000469054 PEX11BO96011 259 aa12.14□□□□□ -0.47
VPS13D-204ENST00000469054 CTSLP07711 333 aa12.14□□□□□ -0.47
VPS13D-204ENST00000469054 C5AR1P21730 350 aa12.14□□□□□ -0.47
VPS13D-204ENST00000469054 CCNCP24863 283 aa12.14□□□□□ -0.47
VPS13D-204ENST00000469054 SLC8A1P32418 973 aa12.14□□□□□ -0.47
VPS13D-204ENST00000469054 NBL1P41271 181 aa12.14□□□□□ -0.47
VPS13D-204ENST00000469054 PSMD8P48556 350 aa12.14□□□□□ -0.47
VPS13D-204ENST00000469054 TPMTP51580 245 aa12.14□□□□□ -0.47
VPS13D-204ENST00000469054 CCNHP51946 323 aaPredicted RBP12.14□□□□□ -0.47
VPS13D-204ENST00000469054 RHOAP61586 193 aa12.14□□□□□ -0.47
VPS13D-204ENST00000469054 SLC10A7Q0GE19 358 aa12.14□□□□□ -0.47
VPS13D-204ENST00000469054 SFSWAPQ12872 951 aaKnown RBP12.14□□□□□ -0.47
VPS13D-204ENST00000469054 HNRNPDQ14103 355 aaKnown RBP12.14□□□□□ -0.47
VPS13D-204ENST00000469054 SIM2Q14190 667 aaPredicted RBP12.14□□□□□ -0.47
VPS13D-204ENST00000469054 LBRQ14739 615 aaKnown RBP12.14□□□□□ -0.47
VPS13D-204ENST00000469054 MYLK3Q32MK0 819 aa12.14□□□□□ -0.47
VPS13D-204ENST00000469054 TMCO4Q5TGY1 634 aa12.14□□□□□ -0.47
VPS13D-204ENST00000469054 MEI1Q5TIA1 1274 aa12.14□□□□□ -0.47
VPS13D-204ENST00000469054 FAM46CQ5VWP2 391 aa12.14□□□□□ -0.47
VPS13D-204ENST00000469054 TIGD7Q6NT04 549 aaPredicted RBP12.14□□□□□ -0.47
VPS13D-204ENST00000469054 NPNTQ6UXI9 565 aa12.14□□□□□ -0.47
VPS13D-204ENST00000469054 C11orf74Q86VG3 221 aa12.14□□□□□ -0.47
VPS13D-204ENST00000469054 RYBPQ8N488 228 aaPredicted RBP12.14□□□□□ -0.47
VPS13D-204ENST00000469054 FRMD1Q8N878 549 aa12.14□□□□□ -0.47
VPS13D-204ENST00000469054 TMIEQ8NEW7 156 aa12.14□□□□□ -0.47
VPS13D-204ENST00000469054 PIP4K2CQ8TBX8 421 aa12.14□□□□□ -0.47
VPS13D-204ENST00000469054 HDAC11Q96DB2 347 aa12.14□□□□□ -0.47
VPS13D-204ENST00000469054 MS4A3Q96HJ5 214 aa12.14□□□□□ -0.47
VPS13D-204ENST00000469054 GDAP1L1Q96MZ0 367 aa12.14□□□□□ -0.47
VPS13D-204ENST00000469054 OLFM3Q96PB7 478 aa12.14□□□□□ -0.47
VPS13D-204ENST00000469054 CINPQ9BW66 212 aaPredicted RBP12.14□□□□□ -0.47
VPS13D-204ENST00000469054 PABPC3Q9H361 631 aaKnown RBP12.14□□□□□ -0.47
VPS13D-204ENST00000469054 CD93Q9NPY3 652 aa12.14□□□□□ -0.47
VPS13D-204ENST00000469054 LHX3Q9UBR4 397 aa12.14□□□□□ -0.47
VPS13D-204ENST00000469054 SEPT3Q9UH03 358 aa12.14□□□□□ -0.47
VPS13D-204ENST00000469054 IL36AQ9UHA7 158 aa12.14□□□□□ -0.47
VPS13D-204ENST00000469054 SARDHQ9UL12 918 aa12.14□□□□□ -0.47
VPS13D-204ENST00000469054 PYCARDQ9ULZ3 195 aa12.14□□□□□ -0.47
VPS13D-204ENST00000469054 CYP8B1Q9UNU6 501 aa12.14□□□□□ -0.47
VPS13D-204ENST00000469054 WASF2Q9Y6W5 498 aa12.14□□□□□ -0.47
VPS13D-204ENST00000469054 MUC22E2RYF6 1773 aaPredicted RBP12.14□□□□□ -0.47
VPS13D-204ENST00000469054 IGHV1OR15-9A0A0B4J2B8 117 aa12.13□□□□□ -0.47
VPS13D-204ENST00000469054 PPP1R12AO14974 1030 aaPredicted RBP12.13□□□□□ -0.47
VPS13D-204ENST00000469054 MATN3O15232 486 aa12.13□□□□□ -0.47
VPS13D-204ENST00000469054 MID1O15344 667 aa12.13□□□□□ -0.47
VPS13D-204ENST00000469054 LEFTY1O75610 366 aa12.13□□□□□ -0.47
VPS13D-204ENST00000469054 TJP3O95049 919 aa12.13□□□□□ -0.47
VPS13D-204ENST00000469054 IGSF6O95976 241 aa12.13□□□□□ -0.47
VPS13D-204ENST00000469054 ADH1BP00325 375 aa12.13□□□□□ -0.47
VPS13D-204ENST00000469054 IGLV3-19P01714 112 aa12.13□□□□□ -0.47
VPS13D-204ENST00000469054 PRNPP04156 253 aa12.13□□□□□ -0.47
VPS13D-204ENST00000469054 CD6P30203 668 aa12.13□□□□□ -0.47
VPS13D-204ENST00000469054 OXTRP30559 389 aa12.13□□□□□ -0.47
VPS13D-204ENST00000469054 RENBPP51606 427 aa12.13□□□□□ -0.47
VPS13D-204ENST00000469054 NHLH1Q02575 133 aa12.13□□□□□ -0.47
VPS13D-204ENST00000469054 RAD51Q06609 339 aa12.13□□□□□ -0.47
VPS13D-204ENST00000469054 ZNF33AQ06730 810 aa12.13□□□□□ -0.47
VPS13D-204ENST00000469054 PPIDQ08752 370 aaKnown RBP12.13□□□□□ -0.47
VPS13D-204ENST00000469054 NSUN2Q08J23 767 aaKnown RBP eCLIP12.13□□□□□ -0.47
VPS13D-204ENST00000469054 ZNF211Q13398 564 aaPredicted RBP12.13□□□□□ -0.47
VPS13D-204ENST00000469054 PDK1Q15118 436 aa12.13□□□□□ -0.47
VPS13D-204ENST00000469054 ARSIQ5FYB1 569 aa12.13□□□□□ -0.47
VPS13D-204ENST00000469054 ATXN7L2Q5T6C5 722 aaPredicted RBP12.13□□□□□ -0.47
VPS13D-204ENST00000469054 MARC1Q5VT66 337 aa12.13□□□□□ -0.47
VPS13D-204ENST00000469054 DCAF12L1Q5VU92 463 aa12.13□□□□□ -0.47
VPS13D-204ENST00000469054 AADACL2Q6P093 401 aa12.13□□□□□ -0.47
VPS13D-204ENST00000469054 BBS12Q6ZW61 710 aa12.13□□□□□ -0.47
VPS13D-204ENST00000469054 USP30Q70CQ3 517 aa12.13□□□□□ -0.47
VPS13D-204ENST00000469054 CEP68Q76N32 757 aa12.13□□□□□ -0.47
VPS13D-204ENST00000469054 KBTBD6Q86V97 674 aa12.13□□□□□ -0.47
VPS13D-204ENST00000469054 CCDC13Q8IYE1 715 aa12.13□□□□□ -0.47
VPS13D-204ENST00000469054 BBS5Q8N3I7 341 aa12.13□□□□□ -0.47
VPS13D-204ENST00000469054 HDDC3Q8N4P3 179 aa12.13□□□□□ -0.47
VPS13D-204ENST00000469054 FAM160A2Q8N612 972 aaPredicted RBP12.13□□□□□ -0.47
VPS13D-204ENST00000469054 TSEN2Q8NCE0 465 aaKnown RBP12.13□□□□□ -0.47
VPS13D-204ENST00000469054 CCNYQ8ND76 341 aa12.13□□□□□ -0.47
VPS13D-204ENST00000469054 OR6K2Q8NGY2 324 aa12.13□□□□□ -0.47
VPS13D-204ENST00000469054 LRRN4Q8WUT4 740 aa12.13□□□□□ -0.47
VPS13D-204ENST00000469054 MAML1Q92585 1016 aa12.13□□□□□ -0.47
VPS13D-204ENST00000469054 P3H4Q92791 437 aa12.13□□□□□ -0.47
VPS13D-204ENST00000469054 FATE1Q969F0 183 aa12.13□□□□□ -0.47
VPS13D-204ENST00000469054 LRIG1Q96JA1 1093 aa12.13□□□□□ -0.47
VPS13D-204ENST00000469054 EXOC2Q96KP1 924 aa12.13□□□□□ -0.47
VPS13D-204ENST00000469054 PSKH2Q96QS6 385 aa12.13□□□□□ -0.47
VPS13D-204ENST00000469054 LGMNQ99538 433 aa12.13□□□□□ -0.47
VPS13D-204ENST00000469054 BRD8Q9H0E9 1235 aa12.13□□□□□ -0.47
VPS13D-204ENST00000469054 EPC1Q9H2F5 836 aa12.13□□□□□ -0.47
VPS13D-204ENST00000469054 SEMA4AQ9H3S1 761 aa12.13□□□□□ -0.47
VPS13D-204ENST00000469054 FBXL12Q9NXK8 326 aa12.13□□□□□ -0.47
VPS13D-204ENST00000469054 WSB2Q9NYS7 404 aaPredicted RBP12.13□□□□□ -0.47
VPS13D-204ENST00000469054 SAE1Q9UBE0 346 aaPredicted RBP12.13□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 27.3 ms