RNA–Protein interactions for RNA: ENST00000413725.5

SF1-206, Transcript of splicing factor 1, human

TSL 2

Gene SF1, Length 843 nt, Biotype protein coding, Subcellular localisation Cytosol .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SF1-206	ENST00000413725	TM6SF2	Q9BZW4	377 aa		13.38	□□□□□ -0.27
SF1-206	ENST00000413725	TNKS2	Q9H2K2	1166 aa		13.38	□□□□□ -0.27
SF1-206	ENST00000413725	MTG2	Q9H4K7	406 aa		13.38	□□□□□ -0.27
SF1-206	ENST00000413725	POLR3B	Q9NW08	1133 aa	Predicted RBP	13.38	□□□□□ -0.27
SF1-206	ENST00000413725	C2orf42	Q9NWW7	574 aa		13.38	□□□□□ -0.27
SF1-206	ENST00000413725	EIF2AK3	Q9NZJ5	1116 aa	Known RBP	13.38	□□□□□ -0.27
SF1-206	ENST00000413725	BCCIP	Q9P287	314 aa	Known RBP eCLIP	13.38	□□□□□ -0.27
SF1-206	ENST00000413725	CACNA1H	O95180	2353 aa		13.38	□□□□□ -0.27
SF1-206	ENST00000413725	ABCA7	Q8IZY2	2146 aa		13.37	□□□□□ -0.27
SF1-206	ENST00000413725	TRPM6	Q9BX84	2022 aa		13.37	□□□□□ -0.27
SF1-206	ENST00000413725	DOCK9	Q9BZ29	2069 aa		13.37	□□□□□ -0.27
SF1-206	ENST00000413725	CES2	O00748	559 aa		13.37	□□□□□ -0.27
SF1-206	ENST00000413725	MTSS1	O43312	755 aa		13.37	□□□□□ -0.27
SF1-206	ENST00000413725	FGG	P02679	453 aa		13.37	□□□□□ -0.27
SF1-206	ENST00000413725	CCNB1	P14635	433 aa		13.37	□□□□□ -0.27
SF1-206	ENST00000413725	MMP13	P45452	471 aa		13.37	□□□□□ -0.27
SF1-206	ENST00000413725	EIF3E	P60228	445 aa	Known RBP	13.37	□□□□□ -0.27
SF1-206	ENST00000413725	RAD51	Q06609	339 aa		13.37	□□□□□ -0.27
SF1-206	ENST00000413725	SLC10A7	Q0GE19	358 aa		13.37	□□□□□ -0.27
SF1-206	ENST00000413725	PRKD1	Q15139	912 aa	Predicted RBP	13.37	□□□□□ -0.27
SF1-206	ENST00000413725	CYTH1	Q15438	398 aa		13.37	□□□□□ -0.27
SF1-206	ENST00000413725	LONRF2	Q1L5Z9	754 aa		13.37	□□□□□ -0.27
SF1-206	ENST00000413725	SLC45A4	Q5BKX6	768 aa		13.37	□□□□□ -0.27
SF1-206	ENST00000413725	CARD16	Q5EG05	197 aa		13.37	□□□□□ -0.27
SF1-206	ENST00000413725	ANO7	Q6IWH7	933 aa		13.37	□□□□□ -0.27
SF1-206	ENST00000413725	ADAT2	Q7Z6V5	191 aa	Known RBP	13.37	□□□□□ -0.27
SF1-206	ENST00000413725	CDKL3	Q8IVW4	592 aa	Predicted RBP	13.37	□□□□□ -0.27
SF1-206	ENST00000413725	STK40	Q8N2I9	435 aa		13.37	□□□□□ -0.27
SF1-206	ENST00000413725	PGBD3	Q8N328	593 aa		13.37	□□□□□ -0.27
SF1-206	ENST00000413725	OR2AP1	Q8NGE2	309 aa		13.37	□□□□□ -0.27
SF1-206	ENST00000413725	HMGB4	Q8WW32	186 aa		13.37	□□□□□ -0.27
SF1-206	ENST00000413725	MAML1	Q92585	1016 aa		13.37	□□□□□ -0.27
SF1-206	ENST00000413725	ERLEC1	Q96DZ1	483 aa		13.37	□□□□□ -0.27
SF1-206	ENST00000413725	QKI	Q96PU8	341 aa	Known RBP eCLIP	13.37	□□□□□ -0.27
SF1-206	ENST00000413725	PSKH2	Q96QS6	385 aa		13.37	□□□□□ -0.27
SF1-206	ENST00000413725	FRMD8P1	Q9BZ68	369 aa	Predicted RBP	13.37	□□□□□ -0.27
SF1-206	ENST00000413725	AMACR	Q9UHK6	382 aa		13.37	□□□□□ -0.27
SF1-206	ENST00000413725	FBXO4	Q9UKT5	387 aa		13.37	□□□□□ -0.27
SF1-206	ENST00000413725	GON4L	Q3T8J9	2241 aa		13.36	□□□□□ -0.27
SF1-206	ENST00000413725	SDK1	Q7Z5N4	2213 aa		13.36	□□□□□ -0.27
SF1-206	ENST00000413725	TCRBV7S2A1N4T	A0A589	114 aa		13.36	□□□□□ -0.27
SF1-206	ENST00000413725	C1QTNF3-AMACR	E9PGA6	284 aa		13.36	□□□□□ -0.27
SF1-206	ENST00000413725		K7ESF4	209 aa		13.36	□□□□□ -0.27
SF1-206	ENST00000413725	GALR2	O43603	387 aa	Predicted RBP	13.36	□□□□□ -0.27
SF1-206	ENST00000413725	ZNF821	O75541	412 aa	Predicted RBP	13.36	□□□□□ -0.27
SF1-206	ENST00000413725	PEX11B	O96011	259 aa		13.36	□□□□□ -0.27
SF1-206	ENST00000413725	RBP3	P10745	1247 aa		13.36	□□□□□ -0.27
SF1-206	ENST00000413725	PRLR	P16471	622 aa		13.36	□□□□□ -0.27
SF1-206	ENST00000413725	GABRG2	P18507	467 aa		13.36	□□□□□ -0.27
SF1-206	ENST00000413725	HOXA6	P31267	233 aa		13.36	□□□□□ -0.27
SF1-206	ENST00000413725	CASQ1	P31415	396 aa		13.36	□□□□□ -0.27
SF1-206	ENST00000413725	CCNH	P51946	323 aa	Predicted RBP	13.36	□□□□□ -0.27
SF1-206	ENST00000413725	IFI35	P80217	286 aa	Predicted RBP	13.36	□□□□□ -0.27
SF1-206	ENST00000413725	PAPD7	Q5XG87	772 aa	Known RBP	13.36	□□□□□ -0.27
SF1-206	ENST00000413725	ZNF776	Q68DI1	518 aa	Predicted RBP	13.36	□□□□□ -0.27
SF1-206	ENST00000413725	HEATR6	Q6AI08	1181 aa	Known RBP	13.36	□□□□□ -0.27
SF1-206	ENST00000413725	DARS2	Q6PI48	645 aa	Known RBP	13.36	□□□□□ -0.27
SF1-206	ENST00000413725	KIAA1324	Q6UXG2	1013 aa	Known RBP	13.36	□□□□□ -0.27
SF1-206	ENST00000413725	SYT10	Q6XYQ8	523 aa		13.36	□□□□□ -0.27
SF1-206	ENST00000413725	DPY19L3	Q6ZPD9	716 aa		13.36	□□□□□ -0.27
SF1-206	ENST00000413725	NYAP1	Q6ZVC0	841 aa		13.36	□□□□□ -0.27
SF1-206	ENST00000413725	TMPRSS6	Q8IU80	811 aa		13.36	□□□□□ -0.27
SF1-206	ENST00000413725	RASGEF1C	Q8N431	466 aa		13.36	□□□□□ -0.27
SF1-206	ENST00000413725	TEX26	Q8N6G2	289 aa		13.36	□□□□□ -0.27
SF1-206	ENST00000413725	TSEN2	Q8NCE0	465 aa	Known RBP	13.36	□□□□□ -0.27
SF1-206	ENST00000413725	OR2A12	Q8NGT7	310 aa		13.36	□□□□□ -0.27
SF1-206	ENST00000413725	LRRN4	Q8WUT4	740 aa		13.36	□□□□□ -0.27
SF1-206	ENST00000413725	PRCC	Q92733	491 aa	Predicted RBP	13.36	□□□□□ -0.27
SF1-206	ENST00000413725	C16orf45	Q96MC5	204 aa	Predicted RBP	13.36	□□□□□ -0.27
SF1-206	ENST00000413725	PRRX2	Q99811	253 aa		13.36	□□□□□ -0.27
SF1-206	ENST00000413725	RSPH9	Q9H1X1	276 aa	Predicted RBP	13.36	□□□□□ -0.27
SF1-206	ENST00000413725	CD248	Q9HCU0	757 aa		13.36	□□□□□ -0.27
SF1-206	ENST00000413725	RBM22	Q9NW64	420 aa	Known RBP eCLIP	13.36	□□□□□ -0.27	7e-13	■■■■■ 29
SF1-206	ENST00000413725	SEPT10	Q9P0V9	454 aa		13.36	□□□□□ -0.27
SF1-206	ENST00000413725	HECA	Q9UBI9	543 aa	Predicted RBP	13.36	□□□□□ -0.27
SF1-206	ENST00000413725	LHX3	Q9UBR4	397 aa		13.36	□□□□□ -0.27
SF1-206	ENST00000413725	IL36A	Q9UHA7	158 aa		13.36	□□□□□ -0.27
SF1-206	ENST00000413725	SAR1B	Q9Y6B6	198 aa		13.36	□□□□□ -0.27
SF1-206	ENST00000413725	LRRK1	Q38SD2	2015 aa		13.35	□□□□□ -0.27
SF1-206	ENST00000413725	RALGAPA1	Q6GYQ0	2036 aa		13.35	□□□□□ -0.27
SF1-206	ENST00000413725	KIF2A	O00139	706 aa	Predicted RBP	13.35	□□□□□ -0.27
SF1-206	ENST00000413725	KCNK1	O00180	336 aa		13.35	□□□□□ -0.27
SF1-206	ENST00000413725	PGRMC1	O00264	195 aa	Known RBP	13.35	□□□□□ -0.27
SF1-206	ENST00000413725	STK10	O94804	968 aa	Known RBP	13.35	□□□□□ -0.27
SF1-206	ENST00000413725	POP4	O95707	220 aa	Known RBP	13.35	□□□□□ -0.27
SF1-206	ENST00000413725	ADH1B	P00325	375 aa		13.35	□□□□□ -0.27
SF1-206	ENST00000413725	DNTT	P04053	509 aa		13.35	□□□□□ -0.27
SF1-206	ENST00000413725	PRNP	P04156	253 aa		13.35	□□□□□ -0.27
SF1-206	ENST00000413725	TUBB4A	P04350	444 aa		13.35	□□□□□ -0.27
SF1-206	ENST00000413725	ACADM	P11310	421 aa		13.35	□□□□□ -0.27
SF1-206	ENST00000413725	NDUFV2	P19404	249 aa		13.35	□□□□□ -0.27
SF1-206	ENST00000413725	CHRNA3	P32297	505 aa		13.35	□□□□□ -0.27
SF1-206	ENST00000413725	MAPK8	P45983	427 aa		13.35	□□□□□ -0.27
SF1-206	ENST00000413725	CSNK1D	P48730	415 aa		13.35	□□□□□ -0.27
SF1-206	ENST00000413725	COPA	P53621	1224 aa		13.35	□□□□□ -0.27
SF1-206	ENST00000413725	NRL	P54845	237 aa		13.35	□□□□□ -0.27
SF1-206	ENST00000413725	CSTF1	Q05048	431 aa	Known RBP	13.35	□□□□□ -0.27
SF1-206	ENST00000413725	ZBTB16	Q05516	673 aa		13.35	□□□□□ -0.27
SF1-206	ENST00000413725	NSUN2	Q08J23	767 aa	Known RBP eCLIP	13.35	□□□□□ -0.27
SF1-206	ENST00000413725	SFSWAP	Q12872	951 aa	Known RBP	13.35	□□□□□ -0.27

Retrieved 100 of 20,778 RNA–protein pairs in 21.3 ms