RNA–Protein interactions for RNA: ENST00000351842.8

USP4-202, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 1 (best) BASIC

Gene USP4, Length 3,222 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-202ENST00000351842 PPP1R21Q6ZMI0 780 aa9.36□□□□□ -0.91
USP4-202ENST00000351842 GPR161Q8N6U8 529 aaKnown RBP9.36□□□□□ -0.91
USP4-202ENST00000351842 ZNF513Q8N8E2 541 aaPredicted RBP9.36□□□□□ -0.91
USP4-202ENST00000351842 CHST14Q8NCH0 376 aa9.36□□□□□ -0.91
USP4-202ENST00000351842 NAT14Q8WUY8 206 aa9.36□□□□□ -0.91
USP4-202ENST00000351842 CASKIN2Q8WXE0 1202 aa9.36□□□□□ -0.91
USP4-202ENST00000351842 GOLGA6AQ9NYA3 693 aa9.36□□□□□ -0.91
USP4-202ENST00000351842 DOCK4Q8N1I0 1966 aa9.36□□□□□ -0.91
USP4-202ENST00000351842 GOLGA8KD6RF30 607 aa9.36□□□□□ -0.91
USP4-202ENST00000351842 SPECC1L-ADORA2AF8WAN1 911 aa9.36□□□□□ -0.91
USP4-202ENST00000351842 GOLGA8TH3BQL2 631 aa9.36□□□□□ -0.91
USP4-202ENST00000351842 SEC31AO94979 1220 aaKnown RBP9.36□□□□□ -0.91
USP4-202ENST00000351842 AGTP01019 485 aa9.36□□□□□ -0.91
USP4-202ENST00000351842 CTHP32929 405 aa9.36□□□□□ -0.91
USP4-202ENST00000351842 METAP1P53582 386 aa9.36□□□□□ -0.91
USP4-202ENST00000351842 GALNT2Q10471 571 aa9.36□□□□□ -0.91
USP4-202ENST00000351842 TCEA2Q15560 299 aa9.36□□□□□ -0.91
USP4-202ENST00000351842 RETSATQ6NUM9 610 aa9.36□□□□□ -0.91
USP4-202ENST00000351842 BZW1Q7L1Q6 419 aaKnown RBP9.36□□□□□ -0.91
USP4-202ENST00000351842 ALLCQ8N6M5 410 aa9.36□□□□□ -0.91
USP4-202ENST00000351842 ELSPBP1Q96BH3 223 aa9.36□□□□□ -0.91
USP4-202ENST00000351842 QKIQ96PU8 341 aaKnown RBP eCLIP9.36□□□□□ -0.91
USP4-202ENST00000351842 P2RY13Q9BPV8 354 aa9.36□□□□□ -0.91
USP4-202ENST00000351842 PARD6BQ9BYG5 372 aa9.36□□□□□ -0.91
USP4-202ENST00000351842 USP29Q9HBJ7 922 aa9.36□□□□□ -0.91
USP4-202ENST00000351842 ELOVL2Q9NXB9 296 aa9.36□□□□□ -0.91
USP4-202ENST00000351842 RCOR3Q9P2K3 495 aaPredicted RBP9.36□□□□□ -0.91
USP4-202ENST00000351842 RNF14Q9UBS8 474 aa9.36□□□□□ -0.91
USP4-202ENST00000351842 SLC25A13Q9UJS0 675 aa9.36□□□□□ -0.91
USP4-202ENST00000351842 ANAPC5Q9UJX4 755 aa9.36□□□□□ -0.91
USP4-202ENST00000351842 PCDHB9Q9Y5E1 797 aa9.36□□□□□ -0.91
USP4-202ENST00000351842 IGLV3-10A0A075B6K4 115 aa9.35□□□□□ -0.91
USP4-202ENST00000351842 EGFP01133 1207 aa9.35□□□□□ -0.91
USP4-202ENST00000351842 NR2C2P49116 596 aa9.35□□□□□ -0.91
USP4-202ENST00000351842 FCHO2Q0JRZ9 810 aa9.35□□□□□ -0.91
USP4-202ENST00000351842 POU6F1Q14863 301 aa9.35□□□□□ -0.91
USP4-202ENST00000351842 PDGFRLQ15198 375 aa9.35□□□□□ -0.91
USP4-202ENST00000351842 UMODL1-AS1Q8N2C9 162 aa9.35□□□□□ -0.91
USP4-202ENST00000351842 C9orf72Q96LT7 481 aa9.35□□□□□ -0.91
USP4-202ENST00000351842 MYOCQ99972 504 aa9.35□□□□□ -0.91
USP4-202ENST00000351842 FICDQ9BVA6 458 aa9.35□□□□□ -0.91
USP4-202ENST00000351842 ABCG8Q9H221 673 aa9.35□□□□□ -0.91
USP4-202ENST00000351842 NEUROG2Q9H2A3 272 aa9.35□□□□□ -0.91
USP4-202ENST00000351842 SUDS3Q9H7L9 328 aaPredicted RBP9.35□□□□□ -0.91
USP4-202ENST00000351842 NOD2Q9HC29 1040 aa9.35□□□□□ -0.91
USP4-202ENST00000351842 INVSQ9Y283 1065 aa9.35□□□□□ -0.91
USP4-202ENST00000351842 MTF2Q9Y483 593 aaPredicted RBP9.35□□□□□ -0.91
USP4-202ENST00000351842 DYNC1LI1Q9Y6G9 523 aaKnown RBP9.35□□□□□ -0.91
USP4-202ENST00000351842 ZFHX2Q9C0A1 2572 aaPredicted RBP9.35□□□□□ -0.91
USP4-202ENST00000351842 ILVBLA1L0T0 632 aa9.35□□□□□ -0.91
USP4-202ENST00000351842 CHADO15335 359 aa9.35□□□□□ -0.91
USP4-202ENST00000351842 RNF40O75150 1001 aa9.35□□□□□ -0.91
USP4-202ENST00000351842 PDGFBP01127 241 aaPredicted RBP9.35□□□□□ -0.91
USP4-202ENST00000351842 DCNP07585 359 aaKnown RBP9.35□□□□□ -0.91
USP4-202ENST00000351842 POU3F3P20264 500 aaPredicted RBP9.35□□□□□ -0.91
USP4-202ENST00000351842 SLC8A1P32418 973 aa9.35□□□□□ -0.91
USP4-202ENST00000351842 OPRD1P41143 372 aa9.35□□□□□ -0.91
USP4-202ENST00000351842 MAPKAPK2P49137 400 aa9.35□□□□□ -0.91
USP4-202ENST00000351842 TDGQ13569 410 aa9.35□□□□□ -0.91
USP4-202ENST00000351842 PARP15Q460N3 678 aa9.35□□□□□ -0.91
USP4-202ENST00000351842 PGBD5Q8N414 524 aa9.35□□□□□ -0.91
USP4-202ENST00000351842 TERB1Q8NA31 727 aa9.35□□□□□ -0.91
USP4-202ENST00000351842 LPCAT1Q8NF37 534 aa9.35□□□□□ -0.91
USP4-202ENST00000351842 OR52K1Q8NGK4 314 aa9.35□□□□□ -0.91
USP4-202ENST00000351842 FIBINQ8TAL6 211 aa9.35□□□□□ -0.91
USP4-202ENST00000351842 BLOC1S5Q8TDH9 187 aa9.35□□□□□ -0.91
USP4-202ENST00000351842 GRK7Q8WTQ7 553 aa9.35□□□□□ -0.91
USP4-202ENST00000351842 HNRNPLLQ8WVV9 542 aaKnown RBP9.35□□□□□ -0.91
USP4-202ENST00000351842 MAGEH1Q9H213 219 aa9.35□□□□□ -0.91
USP4-202ENST00000351842 CENPHQ9H3R5 247 aa9.35□□□□□ -0.91
USP4-202ENST00000351842 MFSD1Q9H3U5 465 aa9.35□□□□□ -0.91
USP4-202ENST00000351842 SCUBE2Q9NQ36 999 aa9.35□□□□□ -0.91
USP4-202ENST00000351842 PPANQ9NQ55 473 aaKnown RBP9.35□□□□□ -0.91
USP4-202ENST00000351842 PPARGC1AQ9UBK2 798 aaKnown RBP9.35□□□□□ -0.91
USP4-202ENST00000351842 ZNF212Q9UDV6 495 aa9.35□□□□□ -0.91
USP4-202ENST00000351842 ATP8A1Q9Y2Q0 1164 aa9.35□□□□□ -0.91
USP4-202ENST00000351842 FAM153BP0C7A2 387 aa9.35□□□□□ -0.91
USP4-202ENST00000351842 RENBPP51606 427 aa9.35□□□□□ -0.91
USP4-202ENST00000351842 PPIDQ08752 370 aaKnown RBP9.35□□□□□ -0.91
USP4-202ENST00000351842 PTPRCAPQ14761 206 aa9.35□□□□□ -0.91
USP4-202ENST00000351842 FAM153CQ494X1 144 aa9.35□□□□□ -0.91
USP4-202ENST00000351842 TEX44Q53QW1 395 aa9.35□□□□□ -0.91
USP4-202ENST00000351842 DPY19L3Q6ZPD9 716 aa9.35□□□□□ -0.91
USP4-202ENST00000351842 ADIPOR2Q86V24 386 aa9.35□□□□□ -0.91
USP4-202ENST00000351842 MMAAQ8IVH4 418 aaKnown RBP9.35□□□□□ -0.91
USP4-202ENST00000351842 LZTR1Q8N653 840 aa9.35□□□□□ -0.91
USP4-202ENST00000351842 TXNDC5Q8NBS9 432 aaKnown RBP9.35□□□□□ -0.91
USP4-202ENST00000351842 OXNAD1Q96HP4 312 aaPredicted RBP9.35□□□□□ -0.91
USP4-202ENST00000351842 OLFM3Q96PB7 478 aa9.35□□□□□ -0.91
USP4-202ENST00000351842 ERP44Q9BS26 406 aa9.35□□□□□ -0.91
USP4-202ENST00000351842 ANKZF1Q9H8Y5 726 aa9.35□□□□□ -0.91
USP4-202ENST00000351842 FAM153AQ9UHL3 310 aa9.35□□□□□ -0.91
USP4-202ENST00000351842 FAM50BQ9Y247 325 aa9.35□□□□□ -0.91
USP4-202ENST00000351842 A0A0A0MRY4 1105 aa9.34□□□□□ -0.91
USP4-202ENST00000351842 NEMP1O14524 444 aa9.34□□□□□ -0.91
USP4-202ENST00000351842 ACSL3O95573 720 aa9.34□□□□□ -0.91
USP4-202ENST00000351842 APODP05090 189 aa9.34□□□□□ -0.91
USP4-202ENST00000351842 ATP5BP06576 529 aaKnown RBP9.34□□□□□ -0.91
USP4-202ENST00000351842 PDHA1P08559 390 aa9.34□□□□□ -0.91
USP4-202ENST00000351842 CD68P34810 354 aaPredicted RBP9.34□□□□□ -0.91
Retrieved 100 of 20,778 RNA–protein pairs in 33.6 ms