RNA–Protein interactions for RNA: ENST00000333496.14

CLN3-201, Transcript of CLN3, battenin, humanhuman

TSL 5 BASIC

Gene CLN3, Length 1,608 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-201ENST00000333496 NETO2Q8NC67 525 aa16.12■□□□□ 0.17
CLN3-201ENST00000333496 TMIEQ8NEW7 156 aa16.12■□□□□ 0.17
CLN3-201ENST00000333496 OR14C36Q8NHC7 312 aa16.12■□□□□ 0.17
CLN3-201ENST00000333496 SNX19Q92543 992 aa16.12■□□□□ 0.17
CLN3-201ENST00000333496 HSPH1Q92598 858 aa16.12■□□□□ 0.17
CLN3-201ENST00000333496 ARRDC3Q96B67 414 aa16.12■□□□□ 0.17
CLN3-201ENST00000333496 CELF6Q96J87 481 aaKnown RBP16.12■□□□□ 0.17
CLN3-201ENST00000333496 RTKNQ9BST9 563 aa16.12■□□□□ 0.17
CLN3-201ENST00000333496 TM6SF2Q9BZW4 377 aa16.12■□□□□ 0.17
CLN3-201ENST00000333496 SLC39A8Q9C0K1 460 aa16.12■□□□□ 0.17
CLN3-201ENST00000333496 MIR1-1HGQ9H1L0 117 aa16.12■□□□□ 0.17
CLN3-201ENST00000333496 EBF2Q9HAK2 575 aa16.12■□□□□ 0.17
CLN3-201ENST00000333496 IL36AQ9UHA7 158 aa16.12■□□□□ 0.17
CLN3-201ENST00000333496 KNL1Q8NG31 2342 aa16.11■□□□□ 0.17
CLN3-201ENST00000333496 TRPM6Q9BX84 2022 aa16.11■□□□□ 0.17
CLN3-201ENST00000333496 ZSCAN5CA6NGD5 496 aaPredicted RBP16.11■□□□□ 0.17
CLN3-201ENST00000333496 BUB1O43683 1085 aa16.11■□□□□ 0.17
CLN3-201ENST00000333496 LEFTY1O75610 366 aa16.11■□□□□ 0.17
CLN3-201ENST00000333496 FSBPO95073 299 aa16.11■□□□□ 0.17
CLN3-201ENST00000333496 PTMAP06454 111 aaKnown RBP16.11■□□□□ 0.17
CLN3-201ENST00000333496 SDHBP21912 280 aa16.11■□□□□ 0.17
CLN3-201ENST00000333496 DNA2P51530 1060 aa16.11■□□□□ 0.17
CLN3-201ENST00000333496 CCNHP51946 323 aaPredicted RBP16.11■□□□□ 0.17
CLN3-201ENST00000333496 ZNF135P52742 658 aaPredicted RBP16.11■□□□□ 0.17
CLN3-201ENST00000333496 NDST2P52849 883 aa16.11■□□□□ 0.17
CLN3-201ENST00000333496 GEMIN4P57678 1058 aaKnown RBP16.11■□□□□ 0.17
CLN3-201ENST00000333496 AFMIDQ63HM1 303 aa16.11■□□□□ 0.17
CLN3-201ENST00000333496 KIAA0895LQ68EN5 471 aa16.11■□□□□ 0.17
CLN3-201ENST00000333496 RABEPKQ7Z6M1 372 aa16.11■□□□□ 0.17
CLN3-201ENST00000333496 ZNF354CQ86Y25 554 aa16.11■□□□□ 0.17
CLN3-201ENST00000333496 TP53INP2Q8IXH6 220 aa16.11■□□□□ 0.17
CLN3-201ENST00000333496 PLPP6Q8IY26 295 aa16.11■□□□□ 0.17
CLN3-201ENST00000333496 OR2T34Q8NGX1 318 aa16.11■□□□□ 0.17
CLN3-201ENST00000333496 GRIN3AQ8TCU5 1115 aa16.11■□□□□ 0.17
CLN3-201ENST00000333496 TEKT4Q8WW24 435 aa16.11■□□□□ 0.17
CLN3-201ENST00000333496 PDFQ9HBH1 243 aa16.11■□□□□ 0.17
CLN3-201ENST00000333496 STAU2Q9NUL3 570 aaKnown RBP eCLIP16.11■□□□□ 0.17
CLN3-201ENST00000333496 SUSD2Q9UGT4 822 aa16.11■□□□□ 0.17
CLN3-201ENST00000333496 MFHAS1Q9Y4C4 1052 aa16.11■□□□□ 0.17
CLN3-201ENST00000333496 A0A1B0GTW7 788 aa16.1■□□□□ 0.17
CLN3-201ENST00000333496 DCDC2BA2VCK2 349 aa16.1■□□□□ 0.17
CLN3-201ENST00000333496 C4orf47A7E2U8 309 aa16.1■□□□□ 0.17
CLN3-201ENST00000333496 J3KR12 359 aa16.1■□□□□ 0.17
CLN3-201ENST00000333496 KPNA3O00505 521 aaPredicted RBP16.1■□□□□ 0.17
CLN3-201ENST00000333496 BCAT2O15382 392 aaPredicted RBP16.1■□□□□ 0.17
CLN3-201ENST00000333496 DAPK3O43293 454 aa16.1■□□□□ 0.17
CLN3-201ENST00000333496 PLRG1O43660 514 aaKnown RBP16.1■□□□□ 0.17
CLN3-201ENST00000333496 TMCC1O94876 653 aa16.1■□□□□ 0.17
CLN3-201ENST00000333496 PROSCO94903 275 aa16.1■□□□□ 0.17
CLN3-201ENST00000333496 PRNPP04156 253 aa16.1■□□□□ 0.17
CLN3-201ENST00000333496 GNSP15586 552 aa16.1■□□□□ 0.17
CLN3-201ENST00000333496 AMPD1P23109 780 aa16.1■□□□□ 0.17
CLN3-201ENST00000333496 RECQLP46063 649 aaPredicted RBP16.1■□□□□ 0.17
CLN3-201ENST00000333496 TAS2R38P59533 333 aa16.1■□□□□ 0.17
CLN3-201ENST00000333496 ATP13A4Q4VNC1 1196 aa16.1■□□□□ 0.17
CLN3-201ENST00000333496 PIP5KL1Q5T9C9 394 aa16.1■□□□□ 0.17
CLN3-201ENST00000333496 SLC35G2Q8TBE7 412 aa16.1■□□□□ 0.17
CLN3-201ENST00000333496 TSC1Q92574 1164 aa16.1■□□□□ 0.17
CLN3-201ENST00000333496 HEPHQ9BQS7 1158 aa16.1■□□□□ 0.17
CLN3-201ENST00000333496 PCDH18Q9HCL0 1135 aa16.1■□□□□ 0.17
CLN3-201ENST00000333496 ETNK2Q9NVF9 386 aa16.1■□□□□ 0.17
CLN3-201ENST00000333496 DONSONQ9NYP3 566 aa16.1■□□□□ 0.17
CLN3-201ENST00000333496 LRRC72A6NJI9 287 aa16.09■□□□□ 0.17
CLN3-201ENST00000333496 ARHGAP33O14559 1287 aa16.09■□□□□ 0.17
CLN3-201ENST00000333496 SLC7A4O43246 635 aa16.09■□□□□ 0.17
CLN3-201ENST00000333496 IL4RP24394 825 aa16.09■□□□□ 0.17
CLN3-201ENST00000333496 GKP32189 559 aa16.09■□□□□ 0.17
CLN3-201ENST00000333496 PAPOLAP51003 745 aaKnown RBP16.09■□□□□ 0.17
CLN3-201ENST00000333496 ARSEP51690 589 aa16.09■□□□□ 0.17
CLN3-201ENST00000333496 TAS2R40P59535 323 aa16.09■□□□□ 0.17
CLN3-201ENST00000333496 BNC1Q01954 994 aa16.09■□□□□ 0.17
CLN3-201ENST00000333496 INO80DQ53TQ3 878 aaPredicted RBP16.09■□□□□ 0.17
CLN3-201ENST00000333496 OR2AP1Q8NGE2 309 aa16.09■□□□□ 0.17
CLN3-201ENST00000333496 OR6K2Q8NGY2 324 aa16.09■□□□□ 0.17
CLN3-201ENST00000333496 FAM71BQ8TC56 605 aa16.09■□□□□ 0.17
CLN3-201ENST00000333496 CSPG4P5Q96PW8 444 aa16.09■□□□□ 0.17
CLN3-201ENST00000333496 TMEM9BQ9NQ34 198 aa16.09■□□□□ 0.17
CLN3-201ENST00000333496 EIF2AK3Q9NZJ5 1116 aaKnown RBP16.09■□□□□ 0.17
CLN3-201ENST00000333496 A0A1W2PPC4 97 aa16.08■□□□□ 0.17
CLN3-201ENST00000333496 H3BRJ5 948 aa16.08■□□□□ 0.17
CLN3-201ENST00000333496 PRAMEF11O60813 436 aa16.08■□□□□ 0.17
CLN3-201ENST00000333496 GSRP00390 522 aa16.08■□□□□ 0.17
CLN3-201ENST00000333496 CD48P09326 243 aa16.08■□□□□ 0.17
CLN3-201ENST00000333496 CD27P26842 260 aa16.08■□□□□ 0.17
CLN3-201ENST00000333496 ARL4AP40617 200 aa16.08■□□□□ 0.17
CLN3-201ENST00000333496 MAPK8P45983 427 aa16.08■□□□□ 0.17
CLN3-201ENST00000333496 PPP2CBP62714 309 aa16.08■□□□□ 0.17
CLN3-201ENST00000333496 PPP2CAP67775 309 aa16.08■□□□□ 0.17
CLN3-201ENST00000333496 CYTH1Q15438 398 aa16.08■□□□□ 0.17
CLN3-201ENST00000333496 ATXN7L2Q5T6C5 722 aaPredicted RBP16.08■□□□□ 0.17
CLN3-201ENST00000333496 ARHGAP36Q6ZRI8 547 aa16.08■□□□□ 0.17
CLN3-201ENST00000333496 OR2I1PQ8NGU4 316 aa16.08■□□□□ 0.17
CLN3-201ENST00000333496 CASKIN2Q8WXE0 1202 aa16.08■□□□□ 0.17
CLN3-201ENST00000333496 KDM4CQ9H3R0 1056 aa16.08■□□□□ 0.17
CLN3-201ENST00000333496 TM9SF3Q9HD45 589 aa16.08■□□□□ 0.17
CLN3-201ENST00000333496 SPEGQ15772 3267 aa16.08■□□□□ 0.17
CLN3-201ENST00000333496 LRRK1Q38SD2 2015 aa16.08■□□□□ 0.16
CLN3-201ENST00000333496 TBC1D3DA0A087WVF3 549 aa16.08■□□□□ 0.16
CLN3-201ENST00000333496 TBC1D3IA0A087WXS9 549 aa16.08■□□□□ 0.16
CLN3-201ENST00000333496 TBC1D3EA0A087X179 549 aa16.08■□□□□ 0.16
Retrieved 100 of 20,778 RNA–protein pairs in 32.2 ms