RNA–Protein interactions for RNA: ENST00000613670.4

LIG1-221, Transcript of DNA ligase 1, humanhuman

TSL 1 (best) BASIC

Gene LIG1, Length 3,949 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-221ENST00000613670 LMO2P25791 158 aa12.78□□□□□ -0.36
LIG1-221ENST00000613670 NMBRP28336 390 aa12.78□□□□□ -0.36
LIG1-221ENST00000613670 MATKP42679 507 aa12.78□□□□□ -0.36
LIG1-221ENST00000613670 NDUFV1P49821 464 aa12.78□□□□□ -0.36
LIG1-221ENST00000613670 MPP1Q00013 466 aa12.78□□□□□ -0.36
LIG1-221ENST00000613670 LSAMPQ13449 338 aa12.78□□□□□ -0.36
LIG1-221ENST00000613670 AGAP9Q5VTM2 703 aa12.78□□□□□ -0.36
LIG1-221ENST00000613670 METTL21CQ5VZV1 264 aa12.78□□□□□ -0.36
LIG1-221ENST00000613670 OLFML1Q6UWY5 402 aa12.78□□□□□ -0.36
LIG1-221ENST00000613670 DLK2Q6UY11 383 aa12.78□□□□□ -0.36
LIG1-221ENST00000613670 OTOP3Q7RTS5 596 aa12.78□□□□□ -0.36
LIG1-221ENST00000613670 TP53INP2Q8IXH6 220 aa12.78□□□□□ -0.36
LIG1-221ENST00000613670 TUT1Q9H6E5 874 aaKnown RBP12.78□□□□□ -0.36
LIG1-221ENST00000613670 NSMCE4AQ9NXX6 385 aa12.78□□□□□ -0.36
LIG1-221ENST00000613670 MTSS1O43312 755 aa12.78□□□□□ -0.36
LIG1-221ENST00000613670 BAIAP3O94812 1187 aa12.78□□□□□ -0.36
LIG1-221ENST00000613670 MT-ND1P03886 318 aa12.78□□□□□ -0.36
LIG1-221ENST00000613670 USP17L7P0C7H9 530 aa12.78□□□□□ -0.36
LIG1-221ENST00000613670 PSMA4P25789 261 aaKnown RBP12.78□□□□□ -0.36
LIG1-221ENST00000613670 CD151P48509 253 aa12.78□□□□□ -0.36
LIG1-221ENST00000613670 FOXD4Q12950 439 aaPredicted RBP12.78□□□□□ -0.36
LIG1-221ENST00000613670 TRNP1Q6NT89 227 aa12.78□□□□□ -0.36
LIG1-221ENST00000613670 DENND6AQ8IWF6 608 aa12.78□□□□□ -0.36
LIG1-221ENST00000613670 FSTL5Q8N475 847 aaPredicted RBP12.78□□□□□ -0.36
LIG1-221ENST00000613670 GFM2Q969S9 779 aaKnown RBP12.78□□□□□ -0.36
LIG1-221ENST00000613670 BCO2Q9BYV7 579 aa12.78□□□□□ -0.36
LIG1-221ENST00000613670 FZD8Q9H461 694 aa12.78□□□□□ -0.36
LIG1-221ENST00000613670 PDZD7Q9H5P4 517 aa12.78□□□□□ -0.36
LIG1-221ENST00000613670 TMEM165Q9HC07 324 aa12.78□□□□□ -0.36
LIG1-221ENST00000613670 GPRC5DQ9NZD1 345 aa12.78□□□□□ -0.36
LIG1-221ENST00000613670 DOLKQ9UPQ8 538 aa12.78□□□□□ -0.36
LIG1-221ENST00000613670 ASLP04424 464 aa12.77□□□□□ -0.36
LIG1-221ENST00000613670 GK3PQ14409 553 aa12.77□□□□□ -0.36
LIG1-221ENST00000613670 RPS27LQ71UM5 84 aaKnown RBP12.77□□□□□ -0.36
LIG1-221ENST00000613670 PGAM4Q8N0Y7 254 aa12.77□□□□□ -0.36
LIG1-221ENST00000613670 DRAXINQ8NBI3 349 aaPredicted RBP12.77□□□□□ -0.36
LIG1-221ENST00000613670 SPATA22Q8NHS9 363 aa12.77□□□□□ -0.36
LIG1-221ENST00000613670 WNT8BQ93098 351 aa12.77□□□□□ -0.36
LIG1-221ENST00000613670 SLC39A3Q9BRY0 314 aa12.77□□□□□ -0.36
LIG1-221ENST00000613670 RBM22Q9NW64 420 aaKnown RBP eCLIP12.77□□□□□ -0.36
LIG1-221ENST00000613670 ZDHHC2Q9UIJ5 367 aa12.77□□□□□ -0.36
LIG1-221ENST00000613670 ADAM28Q9UKQ2 775 aa12.77□□□□□ -0.36
LIG1-221ENST00000613670 RAB26Q9ULW5 256 aa12.77□□□□□ -0.36
LIG1-221ENST00000613670 CLEC11AQ9Y240 323 aa12.77□□□□□ -0.36
LIG1-221ENST00000613670 PPME1Q9Y570 386 aa12.77□□□□□ -0.36
LIG1-221ENST00000613670 ADCY6O43306 1168 aa12.77□□□□□ -0.37
LIG1-221ENST00000613670 BUD23O43709 281 aaKnown RBP12.77□□□□□ -0.37
LIG1-221ENST00000613670 E2F6O75461 281 aa12.77□□□□□ -0.37
LIG1-221ENST00000613670 CD4P01730 458 aa12.77□□□□□ -0.37
LIG1-221ENST00000613670 HDCP19113 662 aa12.77□□□□□ -0.37
LIG1-221ENST00000613670 DPYSL2Q16555 572 aa12.77□□□□□ -0.37
LIG1-221ENST00000613670 ZNF484Q5JVG2 852 aa12.77□□□□□ -0.37
LIG1-221ENST00000613670 LINC00523Q86TU6 105 aa12.77□□□□□ -0.37
LIG1-221ENST00000613670 NCF1BA6NI72 391 aaPredicted RBP12.77□□□□□ -0.37
LIG1-221ENST00000613670 NCF1CA8MVU1 366 aaPredicted RBP12.77□□□□□ -0.37
LIG1-221ENST00000613670 DYNC1LI2O43237 492 aaPredicted RBP12.77□□□□□ -0.37
LIG1-221ENST00000613670 NCF1P14598 390 aaPredicted RBP12.77□□□□□ -0.37
LIG1-221ENST00000613670 PITX1P78337 314 aaPredicted RBP12.77□□□□□ -0.37
LIG1-221ENST00000613670 NOTUMQ6P988 496 aa12.77□□□□□ -0.37
LIG1-221ENST00000613670 GMLQ99445 158 aa12.77□□□□□ -0.37
LIG1-221ENST00000613670 IL22Q9GZX6 179 aa12.77□□□□□ -0.37
LIG1-221ENST00000613670 MOCS1Q9NZB8 636 aa12.77□□□□□ -0.37
LIG1-221ENST00000613670 TOMM70O94826 608 aa12.76□□□□□ -0.37
LIG1-221ENST00000613670 CCDC166P0CW27 439 aa12.76□□□□□ -0.37
LIG1-221ENST00000613670 CYP2C9P11712 490 aa12.76□□□□□ -0.37
LIG1-221ENST00000613670 IL4RP24394 825 aa12.76□□□□□ -0.37
LIG1-221ENST00000613670 NOS2P35228 1153 aa12.76□□□□□ -0.37
LIG1-221ENST00000613670 CPOXP36551 454 aa12.76□□□□□ -0.37
LIG1-221ENST00000613670 NPY2RP49146 381 aa12.76□□□□□ -0.37
LIG1-221ENST00000613670 LPIN1Q14693 890 aa12.76□□□□□ -0.37
LIG1-221ENST00000613670 C6orf10Q5SRN2 563 aa12.76□□□□□ -0.37
LIG1-221ENST00000613670 GPR107Q5VW38 600 aa12.76□□□□□ -0.37
LIG1-221ENST00000613670 EPGNQ6UW88 154 aa12.76□□□□□ -0.37
LIG1-221ENST00000613670 NAPRTQ6XQN6 538 aa12.76□□□□□ -0.37
LIG1-221ENST00000613670 DDHD1Q8NEL9 900 aa12.76□□□□□ -0.37
LIG1-221ENST00000613670 TKTL2Q9H0I9 626 aa12.76□□□□□ -0.37
LIG1-221ENST00000613670 CRYL1Q9Y2S2 319 aa12.76□□□□□ -0.37
LIG1-221ENST00000613670 PDE4DIPQ5VU43 2346 aa12.76□□□□□ -0.37
LIG1-221ENST00000613670 MAGEB16A2A368 324 aa12.76□□□□□ -0.37
LIG1-221ENST00000613670 M0QZ92 97 aa12.76□□□□□ -0.37
LIG1-221ENST00000613670 CHEK2O96017 543 aa12.76□□□□□ -0.37
LIG1-221ENST00000613670 LGALS2P05162 132 aa12.76□□□□□ -0.37
LIG1-221ENST00000613670 IREB2P48200 963 aaKnown RBP12.76□□□□□ -0.37
LIG1-221ENST00000613670 NUP107P57740 925 aa12.76□□□□□ -0.37
LIG1-221ENST00000613670 MSLNQ13421 630 aaPredicted RBP12.76□□□□□ -0.37
LIG1-221ENST00000613670 MYLK3Q32MK0 819 aa12.76□□□□□ -0.37
LIG1-221ENST00000613670 SLC26A9Q7LBE3 791 aa12.76□□□□□ -0.37
LIG1-221ENST00000613670 HSPBAP1Q96EW2 488 aa12.76□□□□□ -0.37
LIG1-221ENST00000613670 ZNF778Q96MU6 729 aa12.76□□□□□ -0.37
LIG1-221ENST00000613670 ALG9Q9H6U8 611 aa12.76□□□□□ -0.37
LIG1-221ENST00000613670 OR12D3Q9UGF7 316 aa12.76□□□□□ -0.37
LIG1-221ENST00000613670 EMCNQ9ULC0 261 aa12.76□□□□□ -0.37
LIG1-221ENST00000613670 SNRPB2P08579 225 aaKnown RBP12.76□□□□□ -0.37
LIG1-221ENST00000613670 FASP25445 335 aa12.76□□□□□ -0.37
LIG1-221ENST00000613670 SLC26A2P50443 739 aa12.76□□□□□ -0.37
LIG1-221ENST00000613670 CEACAM7Q14002 265 aa12.76□□□□□ -0.37
LIG1-221ENST00000613670 CYP51A1Q16850 503 aa12.76□□□□□ -0.37
LIG1-221ENST00000613670 ZIK1Q3SY52 487 aaPredicted RBP12.76□□□□□ -0.37
LIG1-221ENST00000613670 SAMD4BQ5PRF9 694 aaKnown RBP12.76□□□□□ -0.37
LIG1-221ENST00000613670 ZFP28Q8NHY6 868 aa12.76□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 23.4 ms