RNA–Protein interactions for RNA: ENST00000585121.5

SS18-225, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 2

Gene SS18, Length 1,545 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-225ENST00000585121 ZNF212Q9UDV6 495 aa12.64□□□□□ -0.39
SS18-225ENST00000585121 PCDHGB2Q9Y5G2 931 aa12.64□□□□□ -0.39
SS18-225ENST00000585121 SNX11Q9Y5W9 270 aa12.64□□□□□ -0.39
SS18-225ENST00000585121 BZW2Q9Y6E2 419 aaKnown RBP12.64□□□□□ -0.39
SS18-225ENST00000585121 ACACBO00763 2458 aa12.64□□□□□ -0.39
SS18-225ENST00000585121 PLK4O00444 970 aa12.63□□□□□ -0.39
SS18-225ENST00000585121 VILLO15195 856 aa12.63□□□□□ -0.39
SS18-225ENST00000585121 CREB3O43889 395 aa12.63□□□□□ -0.39
SS18-225ENST00000585121 ZMPSTE24O75844 475 aa12.63□□□□□ -0.39
SS18-225ENST00000585121 TRIM16O95361 564 aa12.63□□□□□ -0.39
SS18-225ENST00000585121 FTLP02792 175 aaPredicted RBP12.63□□□□□ -0.39
SS18-225ENST00000585121 TPM3P06753 285 aa12.63□□□□□ -0.39
SS18-225ENST00000585121 CD38P28907 300 aa12.63□□□□□ -0.39
SS18-225ENST00000585121 ACVRL1P37023 503 aa12.63□□□□□ -0.39
SS18-225ENST00000585121 SHC2P98077 582 aa12.63□□□□□ -0.39
SS18-225ENST00000585121 BNC1Q01954 994 aa12.63□□□□□ -0.39
SS18-225ENST00000585121 MAMLD1Q13495 774 aa12.63□□□□□ -0.39
SS18-225ENST00000585121 TRIP6Q15654 476 aaKnown RBP12.63□□□□□ -0.39
SS18-225ENST00000585121 TDRD12Q587J7 1177 aaKnown RBP12.63□□□□□ -0.39
SS18-225ENST00000585121 CARD16Q5EG05 197 aa12.63□□□□□ -0.39
SS18-225ENST00000585121 PPP1R15BQ5SWA1 713 aa12.63□□□□□ -0.39
SS18-225ENST00000585121 ZNF571Q7Z3V5 609 aaPredicted RBP12.63□□□□□ -0.39
SS18-225ENST00000585121 NLRP14Q86W24 1093 aa12.63□□□□□ -0.39
SS18-225ENST00000585121 GRIN3AQ8TCU5 1115 aa12.63□□□□□ -0.39
SS18-225ENST00000585121 ARHGEF2Q92974 986 aaKnown RBP12.63□□□□□ -0.39
SS18-225ENST00000585121 ISG20Q96AZ6 181 aaKnown RBP12.63□□□□□ -0.39
SS18-225ENST00000585121 SLC6A18Q96N87 628 aa12.63□□□□□ -0.39
SS18-225ENST00000585121 CNTNAP3BQ96NU0 1288 aa12.63□□□□□ -0.39
SS18-225ENST00000585121 HEPHQ9BQS7 1158 aa12.63□□□□□ -0.39
SS18-225ENST00000585121 CNTNAP3Q9BZ76 1288 aa12.63□□□□□ -0.39
SS18-225ENST00000585121 IL21RQ9HBE5 538 aa12.63□□□□□ -0.39
SS18-225ENST00000585121 PREBQ9HCU5 417 aa12.63□□□□□ -0.39
SS18-225ENST00000585121 FZD10Q9ULW2 581 aa12.63□□□□□ -0.39
SS18-225ENST00000585121 SLCO1B1Q9Y6L6 691 aa12.63□□□□□ -0.39
SS18-225ENST00000585121 SCINQ9Y6U3 715 aa12.63□□□□□ -0.39
SS18-225ENST00000585121 KNL1Q8NG31 2342 aa12.63□□□□□ -0.39
SS18-225ENST00000585121 PCDH15Q96QU1 1955 aa12.63□□□□□ -0.39
SS18-225ENST00000585121 SPAARA0A1B0GVQ0 90 aa12.62□□□□□ -0.39
SS18-225ENST00000585121 A0A1W2PQJ5 194 aa12.62□□□□□ -0.39
SS18-225ENST00000585121 ZSCAN5CA6NGD5 496 aaPredicted RBP12.62□□□□□ -0.39
SS18-225ENST00000585121 MAGEC1O60732 1142 aa12.62□□□□□ -0.39
SS18-225ENST00000585121 RNF8O76064 485 aa12.62□□□□□ -0.39
SS18-225ENST00000585121 MYBL1P10243 752 aa12.62□□□□□ -0.39
SS18-225ENST00000585121 HTR7P34969 479 aa12.62□□□□□ -0.39
SS18-225ENST00000585121 CTSKP43235 329 aa12.62□□□□□ -0.39
SS18-225ENST00000585121 CCT8P50990 548 aa12.62□□□□□ -0.39
SS18-225ENST00000585121 METAP1P53582 386 aa12.62□□□□□ -0.39
SS18-225ENST00000585121 INAVAQ3KP66 663 aa12.62□□□□□ -0.39
SS18-225ENST00000585121 SETMARQ53H47 684 aaPredicted RBP12.62□□□□□ -0.39
SS18-225ENST00000585121 ARSIQ5FYB1 569 aa12.62□□□□□ -0.39
SS18-225ENST00000585121 ARTNQ5T4W7 220 aa12.62□□□□□ -0.39
SS18-225ENST00000585121 AGBL4Q5VU57 503 aa12.62□□□□□ -0.39
SS18-225ENST00000585121 NAPEPLDQ6IQ20 393 aa12.62□□□□□ -0.39
SS18-225ENST00000585121 PLEKHA7Q6IQ23 1121 aa12.62□□□□□ -0.39
SS18-225ENST00000585121 NEK5Q6P3R8 708 aa12.62□□□□□ -0.39
SS18-225ENST00000585121 DPY19L3Q6ZPD9 716 aa12.62□□□□□ -0.39
SS18-225ENST00000585121 TRIM69Q86WT6 500 aa12.62□□□□□ -0.39
SS18-225ENST00000585121 RYBPQ8N488 228 aaPredicted RBP12.62□□□□□ -0.39
SS18-225ENST00000585121 RTL3Q8N8U3 475 aaKnown RBP12.62□□□□□ -0.39
SS18-225ENST00000585121 CHST14Q8NCH0 376 aa12.62□□□□□ -0.39
SS18-225ENST00000585121 FAM131CQ96AQ9 280 aa12.62□□□□□ -0.39
SS18-225ENST00000585121 NCAPGQ9BPX3 1015 aa12.62□□□□□ -0.39
SS18-225ENST00000585121 ORAI3Q9BRQ5 295 aa12.62□□□□□ -0.39
SS18-225ENST00000585121 HNRNPUL1Q9BUJ2 856 aaKnown RBP eCLIP12.62□□□□□ -0.39
SS18-225ENST00000585121 TTYH3Q9C0H2 523 aa12.62□□□□□ -0.39
SS18-225ENST00000585121 MRPL47Q9HD33 250 aaKnown RBP12.62□□□□□ -0.39
SS18-225ENST00000585121 GDF3Q9NR23 364 aa12.62□□□□□ -0.39
SS18-225ENST00000585121 CNOT8Q9UFF9 292 aaKnown RBP12.62□□□□□ -0.39
SS18-225ENST00000585121 DMTF1Q9Y222 760 aa12.62□□□□□ -0.39
SS18-225ENST00000585121 FNDC3AQ9Y2H6 1198 aaKnown RBP12.62□□□□□ -0.39
SS18-225ENST00000585121 FCF1Q9Y324 198 aaKnown RBP12.62□□□□□ -0.39
SS18-225ENST00000585121 EIF3CLB5ME19 914 aaKnown RBP12.62□□□□□ -0.39
SS18-225ENST00000585121 FGF10O15520 208 aaPredicted RBP12.62□□□□□ -0.39
SS18-225ENST00000585121 FLRT2O43155 660 aa12.62□□□□□ -0.39
SS18-225ENST00000585121 LATO43561 262 aa12.62□□□□□ -0.39
SS18-225ENST00000585121 BUB1O43683 1085 aa12.62□□□□□ -0.39
SS18-225ENST00000585121 LEFTY1O75610 366 aa12.62□□□□□ -0.39
SS18-225ENST00000585121 CTSLP07711 333 aa12.62□□□□□ -0.39
SS18-225ENST00000585121 SKILP12757 684 aa12.62□□□□□ -0.39
SS18-225ENST00000585121 MAT2AP31153 395 aaKnown RBP12.62□□□□□ -0.39
SS18-225ENST00000585121 YBEYP58557 167 aaPredicted RBP12.62□□□□□ -0.39
SS18-225ENST00000585121 SNRPD1P62314 119 aaKnown RBP12.62□□□□□ -0.39
SS18-225ENST00000585121 PPP2CBP62714 309 aa12.62□□□□□ -0.39
SS18-225ENST00000585121 PPP2CAP67775 309 aa12.62□□□□□ -0.39
SS18-225ENST00000585121 ARF5P84085 180 aa12.62□□□□□ -0.39
SS18-225ENST00000585121 STAT4Q14765 748 aa12.62□□□□□ -0.39
SS18-225ENST00000585121 ZNF423Q2M1K9 1284 aa12.62□□□□□ -0.39
SS18-225ENST00000585121 ZSCAN23Q3MJ62 389 aa12.62□□□□□ -0.39
SS18-225ENST00000585121 LAYNQ6UX15 382 aa12.62□□□□□ -0.39
SS18-225ENST00000585121 ERN2Q76MJ5 926 aaKnown RBP12.62□□□□□ -0.39
SS18-225ENST00000585121 PLPP6Q8IY26 295 aa12.62□□□□□ -0.39
SS18-225ENST00000585121 PYROXD2Q8N2H3 581 aa12.62□□□□□ -0.39
SS18-225ENST00000585121 RHBDD1Q8TEB9 315 aa12.62□□□□□ -0.39
SS18-225ENST00000585121 CASKIN2Q8WXE0 1202 aa12.62□□□□□ -0.39
SS18-225ENST00000585121 SYN2Q92777 582 aaPredicted RBP12.62□□□□□ -0.39
SS18-225ENST00000585121 ZNF653Q96CK0 615 aa12.62□□□□□ -0.39
SS18-225ENST00000585121 CAMK1GQ96NX5 476 aa12.62□□□□□ -0.39
SS18-225ENST00000585121 EIF3CQ99613 913 aaKnown RBP12.62□□□□□ -0.39
SS18-225ENST00000585121 CDC6Q99741 560 aa12.62□□□□□ -0.39
SS18-225ENST00000585121 HDAC8Q9BY41 377 aa12.62□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 34.2 ms