RNA–Protein interactions for RNA: ENST00000565236.1

CLN3-215, Transcript of CLN3, battenin, humanhuman

TSL 3

Gene CLN3, Length 582 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-215ENST00000565236 C3orf20Q8ND61 904 aa22.96■■□□□ 1.27
CLN3-215ENST00000565236 FAM172AQ8WUF8 416 aa22.96■■□□□ 1.27
CLN3-215ENST00000565236 RETREG1Q9H6L5 497 aa22.96■■□□□ 1.27
CLN3-215ENST00000565236 PREBQ9HCU5 417 aa22.96■■□□□ 1.27
CLN3-215ENST00000565236 IL36AQ9UHA7 158 aa22.96■■□□□ 1.27
CLN3-215ENST00000565236 ASPMQ8IZT6 3477 aa22.95■■□□□ 1.27
CLN3-215ENST00000565236 ANKRD62A6NC57 917 aa22.95■■□□□ 1.26
CLN3-215ENST00000565236 SIGLEC16A6NMB1 481 aa22.95■■□□□ 1.26
CLN3-215ENST00000565236 GOLGA8CPA6NN73 597 aa22.95■■□□□ 1.26
CLN3-215ENST00000565236 ZMPSTE24O75844 475 aa22.95■■□□□ 1.26
CLN3-215ENST00000565236 PLEKP08567 350 aaPredicted RBP22.95■■□□□ 1.26
CLN3-215ENST00000565236 FERP16591 822 aa22.95■■□□□ 1.26
CLN3-215ENST00000565236 GPD1P21695 349 aa22.95■■□□□ 1.26
CLN3-215ENST00000565236 DNA2P51530 1060 aa22.95■■□□□ 1.26
CLN3-215ENST00000565236 HDAC4P56524 1084 aa22.95■■□□□ 1.26
CLN3-215ENST00000565236 GSCP56915 257 aaPredicted RBP22.95■■□□□ 1.26
CLN3-215ENST00000565236 STAT4Q14765 748 aa22.95■■□□□ 1.26
CLN3-215ENST00000565236 SPEGQ15772 3267 aa22.95■■□□□ 1.26
CLN3-215ENST00000565236 ARSIQ5FYB1 569 aa22.95■■□□□ 1.26
CLN3-215ENST00000565236 PIP5KL1Q5T9C9 394 aa22.95■■□□□ 1.26
CLN3-215ENST00000565236 DPY19L3Q6ZPD9 716 aa22.95■■□□□ 1.26
CLN3-215ENST00000565236 GRIN3AQ8TCU5 1115 aa22.95■■□□□ 1.26
CLN3-215ENST00000565236 CEP44Q9C0F1 390 aa22.95■■□□□ 1.26
CLN3-215ENST00000565236 TMEM63CQ9P1W3 806 aa22.95■■□□□ 1.26
CLN3-215ENST00000565236 ZMIZ1Q9ULJ6 1067 aa22.95■■□□□ 1.26
CLN3-215ENST00000565236 FAM72CH0Y354 149 aa22.94■■□□□ 1.26
CLN3-215ENST00000565236 TNFSF14O43557 240 aa22.94■■□□□ 1.26
CLN3-215ENST00000565236 MAGEC1O60732 1142 aa22.94■■□□□ 1.26
CLN3-215ENST00000565236 RNGTTO60942 597 aaKnown RBP22.94■■□□□ 1.26
CLN3-215ENST00000565236 ITGAVP06756 1048 aa22.94■■□□□ 1.26
CLN3-215ENST00000565236 RHOQP17081 205 aa22.94■■□□□ 1.26
CLN3-215ENST00000565236 MAPKAPK2P49137 400 aa22.94■■□□□ 1.26
CLN3-215ENST00000565236 ARRB1P49407 418 aaPredicted RBP22.94■■□□□ 1.26
CLN3-215ENST00000565236 SERPINH1P50454 418 aaKnown RBP22.94■■□□□ 1.26
CLN3-215ENST00000565236 NXPH1P58417 271 aa22.94■■□□□ 1.26
CLN3-215ENST00000565236 TAS2R38P59533 333 aa22.94■■□□□ 1.26
CLN3-215ENST00000565236 C1QBPQ07021 282 aaKnown RBP22.94■■□□□ 1.26
CLN3-215ENST00000565236 ANO6Q4KMQ2 910 aa22.94■■□□□ 1.26
CLN3-215ENST00000565236 FAM72AQ5TYM5 149 aa22.94■■□□□ 1.26
CLN3-215ENST00000565236 MANEALQ5VSG8 457 aa22.94■■□□□ 1.26
CLN3-215ENST00000565236 FAM72DQ6L9T8 149 aa22.94■■□□□ 1.26
CLN3-215ENST00000565236 NEK5Q6P3R8 708 aa22.94■■□□□ 1.26
CLN3-215ENST00000565236 MON1BQ7L1V2 547 aa22.94■■□□□ 1.26
CLN3-215ENST00000565236 FAM72BQ86X60 149 aa22.94■■□□□ 1.26
CLN3-215ENST00000565236 GATAD2AQ86YP4 633 aa22.94■■□□□ 1.26
CLN3-215ENST00000565236 PCDH20Q8N6Y1 951 aaKnown RBP22.94■■□□□ 1.26
CLN3-215ENST00000565236 CCDC185Q8N715 623 aa22.94■■□□□ 1.26
CLN3-215ENST00000565236 ARRDC3Q96B67 414 aa22.94■■□□□ 1.26
CLN3-215ENST00000565236 TBC1D31Q96DN5 1066 aa22.94■■□□□ 1.26
CLN3-215ENST00000565236 MAGEB5Q9BZ81 275 aa22.94■■□□□ 1.26
CLN3-215ENST00000565236 DNAI1Q9UI46 699 aa22.94■■□□□ 1.26
CLN3-215ENST00000565236 DOCK9Q9BZ29 2069 aa22.94■■□□□ 1.26
CLN3-215ENST00000565236 TP53BP1Q12888 1972 aaPredicted RBP22.94■■□□□ 1.26
CLN3-215ENST00000565236 PRAMEF26H0Y7S4 382 aa22.93■■□□□ 1.26
CLN3-215ENST00000565236 YKT6O15498 198 aa22.93■■□□□ 1.26
CLN3-215ENST00000565236 ZNF821O75541 412 aaPredicted RBP22.93■■□□□ 1.26
CLN3-215ENST00000565236 LRIG2O94898 1065 aa22.93■■□□□ 1.26
CLN3-215ENST00000565236 ARF5P84085 180 aa22.93■■□□□ 1.26
CLN3-215ENST00000565236 CARD16Q5EG05 197 aa22.93■■□□□ 1.26
CLN3-215ENST00000565236 DNAJC24Q6P3W2 148 aa22.93■■□□□ 1.26
CLN3-215ENST00000565236 ERN2Q76MJ5 926 aaKnown RBP22.93■■□□□ 1.26
CLN3-215ENST00000565236 SLFN11Q7Z7L1 901 aa22.93■■□□□ 1.26
CLN3-215ENST00000565236 IQCHQ86VS3 1027 aa22.93■■□□□ 1.26
CLN3-215ENST00000565236 NTAN1Q96AB6 310 aa22.93■■□□□ 1.26
CLN3-215ENST00000565236 PPP1R16AQ96I34 528 aa22.93■■□□□ 1.26
CLN3-215ENST00000565236 HEPHQ9BQS7 1158 aa22.93■■□□□ 1.26
CLN3-215ENST00000565236 ERVMER34-1Q9H9K5 563 aa22.93■■□□□ 1.26
CLN3-215ENST00000565236 NDFIP2Q9NV92 336 aa22.93■■□□□ 1.26
CLN3-215ENST00000565236 TMEM248Q9NWD8 314 aa22.93■■□□□ 1.26
CLN3-215ENST00000565236 TOR4AQ9NXH8 423 aa22.93■■□□□ 1.26
CLN3-215ENST00000565236 HPCAL4Q9UM19 191 aa22.93■■□□□ 1.26
CLN3-215ENST00000565236 A0A1W2PQU0 124 aa22.92■■□□□ 1.26
CLN3-215ENST00000565236 SMTNL1A8MU46 457 aa22.92■■□□□ 1.26
CLN3-215ENST00000565236 TEX33O43247 280 aa22.92■■□□□ 1.26
CLN3-215ENST00000565236 LEFTY1O75610 366 aa22.92■■□□□ 1.26
CLN3-215ENST00000565236 ACVRL1P37023 503 aa22.92■■□□□ 1.26
CLN3-215ENST00000565236 OVGP1Q12889 678 aa22.92■■□□□ 1.26
CLN3-215ENST00000565236 ACAD10Q6JQN1 1059 aa22.92■■□□□ 1.26
CLN3-215ENST00000565236 SCYL2Q6P3W7 929 aa22.92■■□□□ 1.26
CLN3-215ENST00000565236 NLRP14Q86W24 1093 aa22.92■■□□□ 1.26
CLN3-215ENST00000565236 OXR1Q8N573 874 aa22.92■■□□□ 1.26
CLN3-215ENST00000565236 ZCCHC14Q8WYQ9 949 aaKnown RBP22.92■■□□□ 1.26
CLN3-215ENST00000565236 ARHGEF2Q92974 986 aaKnown RBP22.92■■□□□ 1.26
CLN3-215ENST00000565236 BPIFA3Q9BQP9 254 aa22.92■■□□□ 1.26
CLN3-215ENST00000565236 HDAC8Q9BY41 377 aa22.92■■□□□ 1.26
CLN3-215ENST00000565236 MAGEH1Q9H213 219 aa22.92■■□□□ 1.26
CLN3-215ENST00000565236 FTSJ1Q9UET6 329 aa22.92■■□□□ 1.26
CLN3-215ENST00000565236 FCF1Q9Y324 198 aaKnown RBP22.92■■□□□ 1.26
CLN3-215ENST00000565236 CXorf51AA0A1B0GTR3 108 aa22.91■■□□□ 1.26
CLN3-215ENST00000565236 SLC31A1O15431 190 aa22.91■■□□□ 1.26
CLN3-215ENST00000565236 PCDH8O95206 1070 aa22.91■■□□□ 1.26
CLN3-215ENST00000565236 TNFAIP3P21580 790 aa22.91■■□□□ 1.26
CLN3-215ENST00000565236 ZNF143P52747 638 aaPredicted RBP22.91■■□□□ 1.26
CLN3-215ENST00000565236 GEMIN4P57678 1058 aaKnown RBP22.91■■□□□ 1.26
CLN3-215ENST00000565236 SHBQ15464 509 aa22.91■■□□□ 1.26
CLN3-215ENST00000565236 CCDC157Q569K6 752 aa22.91■■□□□ 1.26
CLN3-215ENST00000565236 IRF2BP2Q7Z5L9 587 aa22.91■■□□□ 1.26
CLN3-215ENST00000565236 SAP25Q8TEE9 199 aa22.91■■□□□ 1.26
CLN3-215ENST00000565236 KLK6Q92876 244 aa22.91■■□□□ 1.26
CLN3-215ENST00000565236 ISG20Q96AZ6 181 aaKnown RBP22.91■■□□□ 1.26
Retrieved 100 of 20,778 RNA–protein pairs in 47.4 ms