RNA–Protein interactions for RNA: ENST00000560175.5

SMAD3-213, Transcript of SMAD family member 3, humanhuman

TSL 4

Gene SMAD3, Length 542 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMAD3-213ENST00000560175 SPON2Q9BUD6 331 aa13.49□□□□□ -0.25
SMAD3-213ENST00000560175 SNRNP25Q9BV90 132 aaKnown RBP13.49□□□□□ -0.25
SMAD3-213ENST00000560175 ZDHHC5Q9C0B5 715 aa13.49□□□□□ -0.25
SMAD3-213ENST00000560175 KLC2Q9H0B6 622 aa13.49□□□□□ -0.25
SMAD3-213ENST00000560175 THAP2Q9H0W7 228 aa13.49□□□□□ -0.25
SMAD3-213ENST00000560175 LRRC19Q9H756 370 aa13.49□□□□□ -0.25
SMAD3-213ENST00000560175 CATSPERBQ9H7T0 1116 aa13.49□□□□□ -0.25
SMAD3-213ENST00000560175 EBF2Q9HAK2 575 aa13.49□□□□□ -0.25
SMAD3-213ENST00000560175 DONSONQ9NYP3 566 aa13.49□□□□□ -0.25
SMAD3-213ENST00000560175 SLCO1B1Q9Y6L6 691 aa13.49□□□□□ -0.25
SMAD3-213ENST00000560175 A0A1W2PPC4 97 aa13.48□□□□□ -0.25
SMAD3-213ENST00000560175 ZSCAN5CA6NGD5 496 aaPredicted RBP13.48□□□□□ -0.25
SMAD3-213ENST00000560175 MEI4A8MW99 385 aa13.48□□□□□ -0.25
SMAD3-213ENST00000560175 PLRG1O43660 514 aaKnown RBP13.48□□□□□ -0.25
SMAD3-213ENST00000560175 RAMP2O60895 175 aa13.48□□□□□ -0.25
SMAD3-213ENST00000560175 RNASEH2AO75792 299 aaKnown RBP13.48□□□□□ -0.25
SMAD3-213ENST00000560175 CHRNA3P32297 505 aa13.48□□□□□ -0.25
SMAD3-213ENST00000560175 PSMD8P48556 350 aa13.48□□□□□ -0.25
SMAD3-213ENST00000560175 ADPRHP54922 357 aa13.48□□□□□ -0.25
SMAD3-213ENST00000560175 GEMIN4P57678 1058 aaKnown RBP13.48□□□□□ -0.25
SMAD3-213ENST00000560175 PIGHQ14442 188 aaPredicted RBP13.48□□□□□ -0.25
SMAD3-213ENST00000560175 SLC18A3Q16572 532 aa13.48□□□□□ -0.25
SMAD3-213ENST00000560175 CA9Q16790 459 aa13.48□□□□□ -0.25
SMAD3-213ENST00000560175 INO80DQ53TQ3 878 aaPredicted RBP13.48□□□□□ -0.25
SMAD3-213ENST00000560175 AGBL4Q5VU57 503 aa13.48□□□□□ -0.25
SMAD3-213ENST00000560175 DAB2IPQ5VWQ8 1189 aa13.48□□□□□ -0.25
SMAD3-213ENST00000560175 AFMIDQ63HM1 303 aa13.48□□□□□ -0.25
SMAD3-213ENST00000560175 IL31Q6EBC2 164 aa13.48□□□□□ -0.25
SMAD3-213ENST00000560175 NCEH1Q6PIU2 408 aa13.48□□□□□ -0.25
SMAD3-213ENST00000560175 DPY19L3Q6ZPD9 716 aa13.48□□□□□ -0.25
SMAD3-213ENST00000560175 CCDC114Q96M63 670 aa13.48□□□□□ -0.25
SMAD3-213ENST00000560175 HNRNPUL1Q9BUJ2 856 aaKnown RBP eCLIP13.48□□□□□ -0.25
SMAD3-213ENST00000560175 AP4E1Q9UPM8 1137 aa13.48□□□□□ -0.25
SMAD3-213ENST00000560175 FARP1Q9Y4F1 1045 aaPredicted RBP13.48□□□□□ -0.25
SMAD3-213ENST00000560175 WASF2Q9Y6W5 498 aa13.48□□□□□ -0.25
SMAD3-213ENST00000560175 NCOR2Q9Y618 2525 aa13.47□□□□□ -0.25
SMAD3-213ENST00000560175 LRRC72A6NJI9 287 aa13.47□□□□□ -0.25
SMAD3-213ENST00000560175 C1QTNF3-AMACRE9PGA6 284 aa13.47□□□□□ -0.25
SMAD3-213ENST00000560175 RNF103O00237 685 aa13.47□□□□□ -0.25
SMAD3-213ENST00000560175 CREB3O43889 395 aa13.47□□□□□ -0.25
SMAD3-213ENST00000560175 PRNPP04156 253 aa13.47□□□□□ -0.25
SMAD3-213ENST00000560175 CFIP05156 583 aa13.47□□□□□ -0.25
SMAD3-213ENST00000560175 CSRP1P21291 193 aaKnown RBP13.47□□□□□ -0.25
SMAD3-213ENST00000560175 IL1R2P27930 398 aa13.47□□□□□ -0.25
SMAD3-213ENST00000560175 EIF4A3P38919 411 aaKnown RBP13.47□□□□□ -0.25
SMAD3-213ENST00000560175 GRIA4P48058 902 aa13.47□□□□□ -0.25
SMAD3-213ENST00000560175 NDST2P52849 883 aa13.47□□□□□ -0.25
SMAD3-213ENST00000560175 TAS2R38P59533 333 aa13.47□□□□□ -0.25
SMAD3-213ENST00000560175 CNTN1Q12860 1018 aa13.47□□□□□ -0.25
SMAD3-213ENST00000560175 SLC14A1Q13336 389 aa13.47□□□□□ -0.25
SMAD3-213ENST00000560175 SERINC3Q13530 473 aa13.47□□□□□ -0.25
SMAD3-213ENST00000560175 DPYSL2Q16555 572 aa13.47□□□□□ -0.25
SMAD3-213ENST00000560175 PARP15Q460N3 678 aa13.47□□□□□ -0.25
SMAD3-213ENST00000560175 BOLA3Q53S33 107 aa13.47□□□□□ -0.25
SMAD3-213ENST00000560175 CARD16Q5EG05 197 aa13.47□□□□□ -0.25
SMAD3-213ENST00000560175 CCDC122Q5T0U0 273 aa13.47□□□□□ -0.25
SMAD3-213ENST00000560175 PIP5KL1Q5T9C9 394 aa13.47□□□□□ -0.25
SMAD3-213ENST00000560175 NEK5Q6P3R8 708 aa13.47□□□□□ -0.25
SMAD3-213ENST00000560175 RAB11FIP1Q6WKZ4 1283 aaPredicted RBP13.47□□□□□ -0.25
SMAD3-213ENST00000560175 DBX2Q6ZNG2 339 aa13.47□□□□□ -0.25
SMAD3-213ENST00000560175 PIP4P1Q86T03 277 aa13.47□□□□□ -0.25
SMAD3-213ENST00000560175 ZCCHC9Q8N567 271 aaKnown RBP13.47□□□□□ -0.25
SMAD3-213ENST00000560175 CHST14Q8NCH0 376 aa13.47□□□□□ -0.25
SMAD3-213ENST00000560175 RNF214Q8ND24 703 aa13.47□□□□□ -0.25
SMAD3-213ENST00000560175 FAM71BQ8TC56 605 aa13.47□□□□□ -0.25
SMAD3-213ENST00000560175 CASKIN2Q8WXE0 1202 aa13.47□□□□□ -0.25
SMAD3-213ENST00000560175 ARHGEF26Q96DR7 871 aa13.47□□□□□ -0.25
SMAD3-213ENST00000560175 LRIG1Q96JA1 1093 aa13.47□□□□□ -0.25
SMAD3-213ENST00000560175 HDAC8Q9BY41 377 aa13.47□□□□□ -0.25
SMAD3-213ENST00000560175 TM9SF3Q9HD45 589 aa13.47□□□□□ -0.25
SMAD3-213ENST00000560175 MYO1AQ9UBC5 1043 aa13.47□□□□□ -0.25
SMAD3-213ENST00000560175 PCSK1NQ9UHG2 260 aa13.47□□□□□ -0.25
SMAD3-213ENST00000560175 ACTL7AQ9Y615 435 aa13.47□□□□□ -0.25
SMAD3-213ENST00000560175 TMEM131Q92545 1883 aa13.46□□□□□ -0.25
SMAD3-213ENST00000560175 TRPM6Q9BX84 2022 aa13.46□□□□□ -0.25
SMAD3-213ENST00000560175 TP53BP1Q12888 1972 aaPredicted RBP13.46□□□□□ -0.25
SMAD3-213ENST00000560175 MED19A0JLT2 244 aaPredicted RBP13.46□□□□□ -0.25
SMAD3-213ENST00000560175 RASA4BC9J798 803 aa13.46□□□□□ -0.25
SMAD3-213ENST00000560175 RASA4O43374 803 aa13.46□□□□□ -0.25
SMAD3-213ENST00000560175 PRPSAP2O60256 369 aa13.46□□□□□ -0.25
SMAD3-213ENST00000560175 GSRP00390 522 aa13.46□□□□□ -0.25
SMAD3-213ENST00000560175 ZNF883P0CG24 379 aa13.46□□□□□ -0.25
SMAD3-213ENST00000560175 NUDT1P36639 197 aa13.46□□□□□ -0.25
SMAD3-213ENST00000560175 AFF3P51826 1226 aaKnown RBP13.46□□□□□ -0.25
SMAD3-213ENST00000560175 RACK1P63244 317 aaKnown RBP13.46□□□□□ -0.25
SMAD3-213ENST00000560175 GRIK2Q13002 908 aa13.46□□□□□ -0.25
SMAD3-213ENST00000560175 ARSIQ5FYB1 569 aa13.46□□□□□ -0.25
SMAD3-213ENST00000560175 TRIM69Q86WT6 500 aa13.46□□□□□ -0.25
SMAD3-213ENST00000560175 MINDY1Q8N5J2 469 aa13.46□□□□□ -0.25
SMAD3-213ENST00000560175 OR14C36Q8NHC7 312 aa13.46□□□□□ -0.25
SMAD3-213ENST00000560175 GANCQ8TET4 914 aa13.46□□□□□ -0.25
SMAD3-213ENST00000560175 TEKT4Q8WW24 435 aa13.46□□□□□ -0.25
SMAD3-213ENST00000560175 ARRDC3Q96B67 414 aa13.46□□□□□ -0.25
SMAD3-213ENST00000560175 KCTD15Q96SI1 283 aaPredicted RBP13.46□□□□□ -0.25
SMAD3-213ENST00000560175 HEPHQ9BQS7 1158 aa13.46□□□□□ -0.25
SMAD3-213ENST00000560175 DHX35Q9H5Z1 703 aaKnown RBP13.46□□□□□ -0.25
SMAD3-213ENST00000560175 PDFQ9HBH1 243 aa13.46□□□□□ -0.25
SMAD3-213ENST00000560175 FSCN3Q9NQT6 498 aa13.46□□□□□ -0.25
SMAD3-213ENST00000560175 ABHD10Q9NUJ1 306 aa13.46□□□□□ -0.25
SMAD3-213ENST00000560175 GPATCH2LQ9NWQ4 482 aa13.46□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 36.5 ms