RNA–Protein interactions for RNA: ENST00000553011.5

PTCH1-226, Transcript of patched 1, humanhuman

TSL 1 (best)

Gene PTCH1, Length 1,037 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCH1-226ENST00000553011 PCDH19Q8TAB3 1148 aa14.39□□□□□ -0.11
PTCH1-226ENST00000553011 OR8D1Q8WZ84 308 aa14.39□□□□□ -0.11
PTCH1-226ENST00000553011 ZC3H10Q96K80 434 aaKnown RBP14.39□□□□□ -0.11
PTCH1-226ENST00000553011 ZNF670Q9BS34 389 aa14.39□□□□□ -0.11
PTCH1-226ENST00000553011 ADGRG1Q9Y653 693 aa14.39□□□□□ -0.11
PTCH1-226ENST00000553011 FRYLO94915 3013 aa14.39□□□□□ -0.11
PTCH1-226ENST00000553011 CACNA1EQ15878 2313 aa14.38□□□□□ -0.11
PTCH1-226ENST00000553011 MSANTD3-TMEFF1A0A0A6YYJ0 341 aa14.38□□□□□ -0.11
PTCH1-226ENST00000553011 ZSCAN5CA6NGD5 496 aaPredicted RBP14.38□□□□□ -0.11
PTCH1-226ENST00000553011 C3orf70A6NLC5 250 aaPredicted RBP14.38□□□□□ -0.11
PTCH1-226ENST00000553011 MCF2LO15068 1137 aa14.38□□□□□ -0.11
PTCH1-226ENST00000553011 ARHGAP6O43182 974 aa14.38□□□□□ -0.11
PTCH1-226ENST00000553011 MAP3K13O43283 966 aa14.38□□□□□ -0.11
PTCH1-226ENST00000553011 PRAMEF11O60813 436 aa14.38□□□□□ -0.11
PTCH1-226ENST00000553011 TMCC1O94876 653 aa14.38□□□□□ -0.11
PTCH1-226ENST00000553011 IL1BP01584 269 aa14.38□□□□□ -0.11
PTCH1-226ENST00000553011 DNTTP04053 509 aa14.38□□□□□ -0.11
PTCH1-226ENST00000553011 CTSLP07711 333 aa14.38□□□□□ -0.11
PTCH1-226ENST00000553011 SLC8A1P32418 973 aa14.38□□□□□ -0.11
PTCH1-226ENST00000553011 MARCKSL1P49006 195 aa14.38□□□□□ -0.11
PTCH1-226ENST00000553011 DNA2P51530 1060 aa14.38□□□□□ -0.11
PTCH1-226ENST00000553011 METAP1P53582 386 aa14.38□□□□□ -0.11
PTCH1-226ENST00000553011 GEMIN4P57678 1058 aaKnown RBP14.38□□□□□ -0.11
PTCH1-226ENST00000553011 CCZ1BP86790 482 aa14.38□□□□□ -0.11
PTCH1-226ENST00000553011 CCZ1P86791 482 aaPredicted RBP14.38□□□□□ -0.11
PTCH1-226ENST00000553011 ZBTB16Q05516 673 aa14.38□□□□□ -0.11
PTCH1-226ENST00000553011 TTC31Q49AM3 519 aaPredicted RBP14.38□□□□□ -0.11
PTCH1-226ENST00000553011 PMS2CLQ68D20 193 aa14.38□□□□□ -0.11
PTCH1-226ENST00000553011 LAIR1Q6GTX8 287 aa14.38□□□□□ -0.11
PTCH1-226ENST00000553011 DPY19L3Q6ZPD9 716 aa14.38□□□□□ -0.11
PTCH1-226ENST00000553011 DAAM2Q86T65 1068 aa14.38□□□□□ -0.11
PTCH1-226ENST00000553011 TMEFF1Q8IYR6 380 aa14.38□□□□□ -0.11
PTCH1-226ENST00000553011 LZTR1Q8N653 840 aa14.38□□□□□ -0.11
PTCH1-226ENST00000553011 DEFB119Q8N690 84 aa14.38□□□□□ -0.11
PTCH1-226ENST00000553011 PCDH20Q8N6Y1 951 aaKnown RBP14.38□□□□□ -0.11
PTCH1-226ENST00000553011 PQLC3Q8N755 202 aa14.38□□□□□ -0.11
PTCH1-226ENST00000553011 FAF2Q96CS3 445 aa14.38□□□□□ -0.11
PTCH1-226ENST00000553011 TOE1Q96GM8 510 aaKnown RBP14.38□□□□□ -0.11
PTCH1-226ENST00000553011 TM6SF2Q9BZW4 377 aa14.38□□□□□ -0.11
PTCH1-226ENST00000553011 CEP44Q9C0F1 390 aa14.38□□□□□ -0.11
PTCH1-226ENST00000553011 PABPC3Q9H361 631 aaKnown RBP14.38□□□□□ -0.11
PTCH1-226ENST00000553011 PDFQ9HBH1 243 aa14.38□□□□□ -0.11
PTCH1-226ENST00000553011 UBA2Q9UBT2 640 aaPredicted RBP14.38□□□□□ -0.11
PTCH1-226ENST00000553011 SERGEFQ9UGK8 458 aa14.38□□□□□ -0.11
PTCH1-226ENST00000553011 SARDHQ9UL12 918 aa14.38□□□□□ -0.11
PTCH1-226ENST00000553011 CEP250Q9BV73 2442 aa14.38□□□□□ -0.11
PTCH1-226ENST00000553011 CXorf51AA0A1B0GTR3 108 aa14.37□□□□□ -0.11
PTCH1-226ENST00000553011 MACROD2A1Z1Q3 448 aa14.37□□□□□ -0.11
PTCH1-226ENST00000553011 GRID2IPA4D2P6 1211 aa14.37□□□□□ -0.11
PTCH1-226ENST00000553011 RNF103O00237 685 aa14.37□□□□□ -0.11
PTCH1-226ENST00000553011 PLK4O00444 970 aa14.37□□□□□ -0.11
PTCH1-226ENST00000553011 ALOX15BO15296 676 aa14.37□□□□□ -0.11
PTCH1-226ENST00000553011 PSTPIP1O43586 416 aa14.37□□□□□ -0.11
PTCH1-226ENST00000553011 MFSD11O43934 449 aa14.37□□□□□ -0.11
PTCH1-226ENST00000553011 GFRA3O60609 400 aa14.37□□□□□ -0.11
PTCH1-226ENST00000553011 IGLV3-19P01714 112 aa14.37□□□□□ -0.11
PTCH1-226ENST00000553011 CD6P30203 668 aa14.37□□□□□ -0.11
PTCH1-226ENST00000553011 CHRNA3P32297 505 aa14.37□□□□□ -0.11
PTCH1-226ENST00000553011 SERPINB6P35237 376 aa14.37□□□□□ -0.11
PTCH1-226ENST00000553011 RECQLP46063 649 aaPredicted RBP14.37□□□□□ -0.11
PTCH1-226ENST00000553011 RPL6Q02878 288 aaKnown RBP14.37□□□□□ -0.11
PTCH1-226ENST00000553011 KIF5AQ12840 1032 aa14.37□□□□□ -0.11
PTCH1-226ENST00000553011 ELF2Q15723 593 aa14.37□□□□□ -0.11
PTCH1-226ENST00000553011 POM121L1PQ3SYA9 428 aa14.37□□□□□ -0.11
PTCH1-226ENST00000553011 CARD16Q5EG05 197 aa14.37□□□□□ -0.11
PTCH1-226ENST00000553011 NCBP2-AS2Q69YL0 99 aa14.37□□□□□ -0.11
PTCH1-226ENST00000553011 ARMCX6Q7L4S7 300 aa14.37□□□□□ -0.11
PTCH1-226ENST00000553011 C11orf74Q86VG3 221 aa14.37□□□□□ -0.11
PTCH1-226ENST00000553011 AADATQ8N5Z0 425 aa14.37□□□□□ -0.11
PTCH1-226ENST00000553011 PIP4K2CQ8TBX8 421 aa14.37□□□□□ -0.11
PTCH1-226ENST00000553011 GANCQ8TET4 914 aa14.37□□□□□ -0.11
PTCH1-226ENST00000553011 ISG20Q96AZ6 181 aaKnown RBP14.37□□□□□ -0.11
PTCH1-226ENST00000553011 RNF25Q96BH1 459 aaPredicted RBP14.37□□□□□ -0.11
PTCH1-226ENST00000553011 CCDC114Q96M63 670 aa14.37□□□□□ -0.11
PTCH1-226ENST00000553011 RNF157Q96PX1 679 aa14.37□□□□□ -0.11
PTCH1-226ENST00000553011 FBXL12Q9NXK8 326 aa14.37□□□□□ -0.11
PTCH1-226ENST00000553011 WSB2Q9NYS7 404 aaPredicted RBP14.37□□□□□ -0.11
PTCH1-226ENST00000553011 IPO11Q9UI26 975 aaKnown RBP14.37□□□□□ -0.11
PTCH1-226ENST00000553011 PPM1HQ9ULR3 514 aa14.37□□□□□ -0.11
PTCH1-226ENST00000553011 FARP1Q9Y4F1 1045 aaPredicted RBP14.37□□□□□ -0.11
PTCH1-226ENST00000553011 TRPM6Q9BX84 2022 aa14.37□□□□□ -0.11
PTCH1-226ENST00000553011 A0A1W2PP55 124 aa14.36□□□□□ -0.11
PTCH1-226ENST00000553011 RHOBTB1O94844 696 aa14.36□□□□□ -0.11
PTCH1-226ENST00000553011 MAP3K6O95382 1288 aa14.36□□□□□ -0.11
PTCH1-226ENST00000553011 ADH1BP00325 375 aa14.36□□□□□ -0.11
PTCH1-226ENST00000553011 C5AR1P21730 350 aa14.36□□□□□ -0.11
PTCH1-226ENST00000553011 OXTRP30559 389 aa14.36□□□□□ -0.11
PTCH1-226ENST00000553011 GKP32189 559 aa14.36□□□□□ -0.11
PTCH1-226ENST00000553011 ACSL1P33121 698 aa14.36□□□□□ -0.11
PTCH1-226ENST00000553011 DRD3P35462 400 aa14.36□□□□□ -0.11
PTCH1-226ENST00000553011 DHPSP49366 369 aaPredicted RBP14.36□□□□□ -0.11
PTCH1-226ENST00000553011 CCNHP51946 323 aaPredicted RBP14.36□□□□□ -0.11
PTCH1-226ENST00000553011 RHOAP61586 193 aa14.36□□□□□ -0.11
PTCH1-226ENST00000553011 PAFAH1B3Q15102 231 aaKnown RBP14.36□□□□□ -0.11
PTCH1-226ENST00000553011 CYTH1Q15438 398 aa14.36□□□□□ -0.11
PTCH1-226ENST00000553011 INO80DQ53TQ3 878 aaPredicted RBP14.36□□□□□ -0.11
PTCH1-226ENST00000553011 ATXN7L2Q5T6C5 722 aaPredicted RBP14.36□□□□□ -0.11
PTCH1-226ENST00000553011 MFSD7Q6UXD7 560 aa14.36□□□□□ -0.11
PTCH1-226ENST00000553011 SLC36A4Q6YBV0 504 aa14.36□□□□□ -0.11
PTCH1-226ENST00000553011 LPCAT2Q7L5N7 544 aa14.36□□□□□ -0.11
Retrieved 100 of 20,778 RNA–protein pairs in 32 ms