RNA–Protein interactions for RNA: ENST00000395653.9

CLN3-207, Transcript of CLN3, battenin, humanhuman

TSL 5 BASIC

Gene CLN3, Length 1,430 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-207ENST00000395653 BUB1O43683 1085 aa22.13■■□□□ 1.13
CLN3-207ENST00000395653 CD48P09326 243 aa22.13■■□□□ 1.13
CLN3-207ENST00000395653 DHPSP49366 369 aaPredicted RBP22.13■■□□□ 1.13
CLN3-207ENST00000395653 VAV2P52735 878 aa22.13■■□□□ 1.13
CLN3-207ENST00000395653 PLPP6Q8IY26 295 aa22.13■■□□□ 1.13
CLN3-207ENST00000395653 DCLK2Q8N568 766 aa22.13■■□□□ 1.13
CLN3-207ENST00000395653 ACRBPQ8NEB7 543 aa22.13■■□□□ 1.13
CLN3-207ENST00000395653 CALN1Q9BXU9 219 aa22.13■■□□□ 1.13
CLN3-207ENST00000395653 BTBD1Q9H0C5 482 aa22.13■■□□□ 1.13
CLN3-207ENST00000395653 TNKS2Q9H2K2 1166 aa22.13■■□□□ 1.13
CLN3-207ENST00000395653 PDFQ9HBH1 243 aa22.13■■□□□ 1.13
CLN3-207ENST00000395653 FBXL12Q9NXK8 326 aa22.13■■□□□ 1.13
CLN3-207ENST00000395653 FZD4Q9ULV1 537 aa22.13■■□□□ 1.13
CLN3-207ENST00000395653 ABCA7Q8IZY2 2146 aa22.12■■□□□ 1.13
CLN3-207ENST00000395653 RCCD1A6NED2 376 aa22.12■■□□□ 1.13
CLN3-207ENST00000395653 GOLGA6L3A6NEY3 463 aa22.12■■□□□ 1.13
CLN3-207ENST00000395653 BTNL10A8MVZ5 291 aa22.12■■□□□ 1.13
CLN3-207ENST00000395653 C1QTNF3-AMACRE9PGA6 284 aa22.12■■□□□ 1.13
CLN3-207ENST00000395653 PJA2O43164 708 aa22.12■■□□□ 1.13
CLN3-207ENST00000395653 BUB1BO60566 1050 aaPredicted RBP22.12■■□□□ 1.13
CLN3-207ENST00000395653 PRAMEF11O60813 436 aa22.12■■□□□ 1.13
CLN3-207ENST00000395653 CHRNA3P32297 505 aa22.12■■□□□ 1.13
CLN3-207ENST00000395653 SERPINB6P35237 376 aa22.12■■□□□ 1.13
CLN3-207ENST00000395653 PTGER3P43115 390 aa22.12■■□□□ 1.13
CLN3-207ENST00000395653 PAPOLAP51003 745 aaKnown RBP22.12■■□□□ 1.13
CLN3-207ENST00000395653 CARD16Q5EG05 197 aa22.12■■□□□ 1.13
CLN3-207ENST00000395653 DPY19L3Q6ZPD9 716 aa22.12■■□□□ 1.13
CLN3-207ENST00000395653 FAM124AQ86V42 546 aa22.12■■□□□ 1.13
CLN3-207ENST00000395653 GPR161Q8N6U8 529 aaKnown RBP22.12■■□□□ 1.13
CLN3-207ENST00000395653 CADM4Q8NFZ8 388 aa22.12■■□□□ 1.13
CLN3-207ENST00000395653 FOXJ1Q92949 421 aa22.12■■□□□ 1.13
CLN3-207ENST00000395653 ZNF419Q96HQ0 510 aaPredicted RBP22.12■■□□□ 1.13
CLN3-207ENST00000395653 GPR174Q9BXC1 333 aa22.12■■□□□ 1.13
CLN3-207ENST00000395653 ARRDC1-AS1Q9H2J1 176 aa22.12■■□□□ 1.13
CLN3-207ENST00000395653 SGK2Q9HBY8 427 aa22.12■■□□□ 1.13
CLN3-207ENST00000395653 ETNK2Q9NVF9 386 aa22.12■■□□□ 1.13
CLN3-207ENST00000395653 KLHL11Q9NVR0 708 aa22.12■■□□□ 1.13
CLN3-207ENST00000395653 SARDHQ9UL12 918 aa22.12■■□□□ 1.13
CLN3-207ENST00000395653 THADAQ6YHU6 1953 aa22.12■■□□□ 1.13
CLN3-207ENST00000395653 BCLAF3A2AJT9 711 aaKnown RBP22.11■■□□□ 1.13
CLN3-207ENST00000395653 DFFAO00273 331 aa22.11■■□□□ 1.13
CLN3-207ENST00000395653 SPOPO43791 374 aa22.11■■□□□ 1.13
CLN3-207ENST00000395653 TMCC1O94876 653 aa22.11■■□□□ 1.13
CLN3-207ENST00000395653 PRNPP04156 253 aa22.11■■□□□ 1.13
CLN3-207ENST00000395653 COMTP21964 271 aa22.11■■□□□ 1.13
CLN3-207ENST00000395653 CREB5Q02930 508 aa22.11■■□□□ 1.13
CLN3-207ENST00000395653 ZNF33AQ06730 810 aa22.11■■□□□ 1.13
CLN3-207ENST00000395653 MMRN1Q13201 1228 aa22.11■■□□□ 1.13
CLN3-207ENST00000395653 ZFYVE27Q5T4F4 411 aa22.11■■□□□ 1.13
CLN3-207ENST00000395653 LYSMD4Q5XG99 296 aa22.11■■□□□ 1.13
CLN3-207ENST00000395653 C11orf63Q6NUN7 778 aa22.11■■□□□ 1.13
CLN3-207ENST00000395653 LEKR1Q6ZMV7 388 aa22.11■■□□□ 1.13
CLN3-207ENST00000395653 CYP2U1Q7Z449 544 aa22.11■■□□□ 1.13
CLN3-207ENST00000395653 SLC41A1Q8IVJ1 513 aa22.11■■□□□ 1.13
CLN3-207ENST00000395653 RHOT1Q8IXI2 618 aa22.11■■□□□ 1.13
CLN3-207ENST00000395653 TXLNBQ8N3L3 684 aa22.11■■□□□ 1.13
CLN3-207ENST00000395653 AADATQ8N5Z0 425 aa22.11■■□□□ 1.13
CLN3-207ENST00000395653 TMIEQ8NEW7 156 aa22.11■■□□□ 1.13
CLN3-207ENST00000395653 PIP4K2CQ8TBX8 421 aa22.11■■□□□ 1.13
CLN3-207ENST00000395653 GANCQ8TET4 914 aa22.11■■□□□ 1.13
CLN3-207ENST00000395653 FAF2Q96CS3 445 aa22.11■■□□□ 1.13
CLN3-207ENST00000395653 OMDQ99983 421 aa22.11■■□□□ 1.13
CLN3-207ENST00000395653 PCED1AQ9H1Q7 454 aa22.11■■□□□ 1.13
CLN3-207ENST00000395653 UBA2Q9UBT2 640 aaPredicted RBP22.11■■□□□ 1.13
CLN3-207ENST00000395653 SERGEFQ9UGK8 458 aa22.11■■□□□ 1.13
CLN3-207ENST00000395653 MFHAS1Q9Y4C4 1052 aa22.11■■□□□ 1.13
CLN3-207ENST00000395653 ALG6Q9Y672 507 aa22.11■■□□□ 1.13
CLN3-207ENST00000395653 A0A1W2PP55 124 aa22.1■■□□□ 1.13
CLN3-207ENST00000395653 RNASEH2AO75792 299 aaKnown RBP22.1■■□□□ 1.13
CLN3-207ENST00000395653 GSRP00390 522 aa22.1■■□□□ 1.13
CLN3-207ENST00000395653 CTSLP07711 333 aa22.1■■□□□ 1.13
CLN3-207ENST00000395653 KDELR1P24390 212 aa22.1■■□□□ 1.13
CLN3-207ENST00000395653 ACSL1P33121 698 aa22.1■■□□□ 1.13
CLN3-207ENST00000395653 MPLP40238 635 aa22.1■■□□□ 1.13
CLN3-207ENST00000395653 DPP6P42658 865 aa22.1■■□□□ 1.13
CLN3-207ENST00000395653 DNA2P51530 1060 aa22.1■■□□□ 1.13
CLN3-207ENST00000395653 SNRPD1P62314 119 aaKnown RBP22.1■■□□□ 1.13
CLN3-207ENST00000395653 ANKRD20A8PQ5CZ79 823 aa22.1■■□□□ 1.13
CLN3-207ENST00000395653 ARMCX6Q7L4S7 300 aa22.1■■□□□ 1.13
CLN3-207ENST00000395653 VSIG1Q86XK7 387 aa22.1■■□□□ 1.13
CLN3-207ENST00000395653 HDDC3Q8N4P3 179 aa22.1■■□□□ 1.13
CLN3-207ENST00000395653 CHST14Q8NCH0 376 aa22.1■■□□□ 1.13
CLN3-207ENST00000395653 OR2AP1Q8NGE2 309 aa22.1■■□□□ 1.13
CLN3-207ENST00000395653 FAM131CQ96AQ9 280 aa22.1■■□□□ 1.13
CLN3-207ENST00000395653 TM6SF2Q9BZW4 377 aa22.1■■□□□ 1.13
CLN3-207ENST00000395653 IL36AQ9UHA7 158 aa22.1■■□□□ 1.13
CLN3-207ENST00000395653 SALL4Q9UJQ4 1053 aa22.1■■□□□ 1.13
CLN3-207ENST00000395653 ZNF487B1APH4 448 aa22.09■■□□□ 1.13
CLN3-207ENST00000395653 J3KR12 359 aa22.09■■□□□ 1.13
CLN3-207ENST00000395653 SEMA4FO95754 770 aa22.09■■□□□ 1.13
CLN3-207ENST00000395653 TGM1P22735 817 aa22.09■■□□□ 1.13
CLN3-207ENST00000395653 DRD3P35462 400 aa22.09■■□□□ 1.13
CLN3-207ENST00000395653 CCNHP51946 323 aaPredicted RBP22.09■■□□□ 1.13
CLN3-207ENST00000395653 IL10RBQ08334 325 aa22.09■■□□□ 1.13
CLN3-207ENST00000395653 SPEM2Q0P670 501 aa22.09■■□□□ 1.13
CLN3-207ENST00000395653 PLA2G2CQ5R387 149 aa22.09■■□□□ 1.13
CLN3-207ENST00000395653 KIAA1328Q86T90 577 aa22.09■■□□□ 1.13
CLN3-207ENST00000395653 DEFB119Q8N690 84 aa22.09■■□□□ 1.13
CLN3-207ENST00000395653 CCDC112Q8NEF3 446 aa22.09■■□□□ 1.13
CLN3-207ENST00000395653 TPCN2Q8NHX9 752 aa22.09■■□□□ 1.13
Retrieved 100 of 20,778 RNA–protein pairs in 29.2 ms