RNA–Protein interactions for RNA: ENST00000392004.7

COL6A3-205, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 1 (best) BASIC

Gene COL6A3, Length 4,037 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-205ENST00000392004 PECAM1P16284 738 aaPredicted RBP10.48□□□□□ -0.73
COL6A3-205ENST00000392004 NFKB1P19838 968 aa10.48□□□□□ -0.73
COL6A3-205ENST00000392004 PAPOLAP51003 745 aaKnown RBP10.48□□□□□ -0.73
COL6A3-205ENST00000392004 DGKEP52429 567 aa10.48□□□□□ -0.73
COL6A3-205ENST00000392004 HDAC4P56524 1084 aa10.48□□□□□ -0.73
COL6A3-205ENST00000392004 TFF2Q03403 129 aa10.48□□□□□ -0.73
COL6A3-205ENST00000392004 INCA1Q0VD86 236 aa10.48□□□□□ -0.73
COL6A3-205ENST00000392004 C11orf63Q6NUN7 778 aa10.48□□□□□ -0.73
COL6A3-205ENST00000392004 PIGWQ7Z7B1 504 aa10.48□□□□□ -0.73
COL6A3-205ENST00000392004 C14orf80Q86SX3 495 aa10.48□□□□□ -0.73
COL6A3-205ENST00000392004 LRRC57Q8N9N7 239 aa10.48□□□□□ -0.73
COL6A3-205ENST00000392004 VPS39Q96JC1 886 aa10.48□□□□□ -0.73
COL6A3-205ENST00000392004 RUNDC3BQ96NL0 473 aa10.48□□□□□ -0.73
COL6A3-205ENST00000392004 ZNF317Q96PQ6 595 aaPredicted RBP10.48□□□□□ -0.73
COL6A3-205ENST00000392004 EGFL8Q99944 293 aa10.48□□□□□ -0.73
COL6A3-205ENST00000392004 WRAP53Q9BUR4 548 aaKnown RBP10.48□□□□□ -0.73
COL6A3-205ENST00000392004 CRISPLD1Q9H336 500 aa10.48□□□□□ -0.73
COL6A3-205ENST00000392004 ETNK2Q9NVF9 386 aa10.48□□□□□ -0.73
COL6A3-205ENST00000392004 UTP6Q9NYH9 597 aaKnown RBP10.48□□□□□ -0.73
COL6A3-205ENST00000392004 LAMB1P07942 1786 aa10.48□□□□□ -0.73
COL6A3-205ENST00000392004 C2orf71A6NGG8 1288 aa10.48□□□□□ -0.73
COL6A3-205ENST00000392004 TRIM16O95361 564 aa10.48□□□□□ -0.73
COL6A3-205ENST00000392004 TYRP14679 529 aa10.48□□□□□ -0.73
COL6A3-205ENST00000392004 ACVRL1P37023 503 aa10.48□□□□□ -0.73
COL6A3-205ENST00000392004 PSMD8P48556 350 aa10.48□□□□□ -0.73
COL6A3-205ENST00000392004 COPS2P61201 443 aa10.48□□□□□ -0.73
COL6A3-205ENST00000392004 IFI35P80217 286 aaPredicted RBP10.48□□□□□ -0.73
COL6A3-205ENST00000392004 HABP4Q5JVS0 413 aaKnown RBP10.48□□□□□ -0.73
COL6A3-205ENST00000392004 FAM26DQ5JW98 314 aa10.48□□□□□ -0.73
COL6A3-205ENST00000392004 C15orf39Q6ZRI6 1047 aa10.48□□□□□ -0.73
COL6A3-205ENST00000392004 ADCK2Q7Z695 626 aa10.48□□□□□ -0.73
COL6A3-205ENST00000392004 ANKS1BQ7Z6G8 1248 aa10.48□□□□□ -0.73
COL6A3-205ENST00000392004 RASGEF1CQ8N431 466 aa10.48□□□□□ -0.73
COL6A3-205ENST00000392004 KIF2BQ8N4N8 673 aa10.48□□□□□ -0.73
COL6A3-205ENST00000392004 OR14C36Q8NHC7 312 aa10.48□□□□□ -0.73
COL6A3-205ENST00000392004 PHOSPHO2Q8TCD6 241 aa10.48□□□□□ -0.73
COL6A3-205ENST00000392004 FAM167BQ9BTA0 163 aa10.48□□□□□ -0.73
COL6A3-205ENST00000392004 IL1RAPL1Q9NZN1 696 aa10.48□□□□□ -0.73
COL6A3-205ENST00000392004 ZNF840PA6NDX5 716 aa10.47□□□□□ -0.73
COL6A3-205ENST00000392004 ENO4A6NNW6 628 aa10.47□□□□□ -0.73
COL6A3-205ENST00000392004 INPP4BO15327 924 aa10.47□□□□□ -0.73
COL6A3-205ENST00000392004 IRAK2O43187 625 aa10.47□□□□□ -0.73
COL6A3-205ENST00000392004 NUDT17P0C025 328 aa10.47□□□□□ -0.73
COL6A3-205ENST00000392004 PAMP19021 973 aa10.47□□□□□ -0.73
COL6A3-205ENST00000392004 TGM2P21980 687 aa10.47□□□□□ -0.73
COL6A3-205ENST00000392004 KCNJ2P63252 427 aa10.47□□□□□ -0.73
COL6A3-205ENST00000392004 RAB33AQ14088 237 aa10.47□□□□□ -0.73
COL6A3-205ENST00000392004 ZBTB6Q15916 424 aa10.47□□□□□ -0.73
COL6A3-205ENST00000392004 NXNQ6DKJ4 435 aa10.47□□□□□ -0.73
COL6A3-205ENST00000392004 PTRHD1Q6GMV3 140 aaKnown RBP10.47□□□□□ -0.73
COL6A3-205ENST00000392004 GRAMD4Q6IC98 578 aa10.47□□□□□ -0.73
COL6A3-205ENST00000392004 CEP68Q76N32 757 aa10.47□□□□□ -0.73
COL6A3-205ENST00000392004 DET1Q7L5Y6 550 aa10.47□□□□□ -0.73
COL6A3-205ENST00000392004 DDX23Q9BUQ8 820 aaKnown RBP10.47□□□□□ -0.73
COL6A3-205ENST00000392004 NR2E1Q9Y466 385 aa10.47□□□□□ -0.73
COL6A3-205ENST00000392004 A0A0A6YYK5 440 aaPredicted RBP10.47□□□□□ -0.73
COL6A3-205ENST00000392004 TCP11X1B4DZS4 312 aa10.47□□□□□ -0.73
COL6A3-205ENST00000392004 TRIM24O15164 1050 aa10.47□□□□□ -0.73
COL6A3-205ENST00000392004 MT-CYBP00156 380 aaPredicted RBP10.47□□□□□ -0.73
COL6A3-205ENST00000392004 APODP05090 189 aa10.47□□□□□ -0.73
COL6A3-205ENST00000392004 DSC1Q08554 894 aa10.47□□□□□ -0.73
COL6A3-205ENST00000392004 SETDB1Q15047 1291 aa10.47□□□□□ -0.73
COL6A3-205ENST00000392004 LRRC14Q15048 493 aa10.47□□□□□ -0.73
COL6A3-205ENST00000392004 SDCCAG8Q86SQ7 713 aaPredicted RBP10.47□□□□□ -0.73
COL6A3-205ENST00000392004 TMEM110Q86TL2 294 aa10.47□□□□□ -0.73
COL6A3-205ENST00000392004 RASSF3Q86WH2 238 aa10.47□□□□□ -0.73
COL6A3-205ENST00000392004 CCNYL1Q8N7R7 359 aa10.47□□□□□ -0.73
COL6A3-205ENST00000392004 PPHLN1Q8NEY8 458 aaKnown RBP10.47□□□□□ -0.73
COL6A3-205ENST00000392004 HMCESQ96FZ2 354 aa10.47□□□□□ -0.73
COL6A3-205ENST00000392004 SLC4A5Q9BY07 1137 aa10.47□□□□□ -0.73
COL6A3-205ENST00000392004 ARL2BPQ9Y2Y0 163 aa10.47□□□□□ -0.73
COL6A3-205ENST00000392004 MKI67P46013 3256 aaKnown RBP10.47□□□□□ -0.73
COL6A3-205ENST00000392004 AVILO75366 819 aa10.47□□□□□ -0.73
COL6A3-205ENST00000392004 IGSF6O95976 241 aa10.47□□□□□ -0.73
COL6A3-205ENST00000392004 SERPIND1P05546 499 aa10.47□□□□□ -0.73
COL6A3-205ENST00000392004 CEBPBP17676 345 aa10.47□□□□□ -0.73
COL6A3-205ENST00000392004 PAX3P23760 479 aa10.47□□□□□ -0.73
COL6A3-205ENST00000392004 STX2P32856 288 aa10.47□□□□□ -0.73
COL6A3-205ENST00000392004 CSKP41240 450 aa10.47□□□□□ -0.73
COL6A3-205ENST00000392004 PFKPQ01813 784 aa10.47□□□□□ -0.73
COL6A3-205ENST00000392004 MROH9Q5TGP6 573 aa10.47□□□□□ -0.73
COL6A3-205ENST00000392004 OLFML1Q6UWY5 402 aa10.47□□□□□ -0.73
COL6A3-205ENST00000392004 VSIG1Q86XK7 387 aa10.47□□□□□ -0.73
COL6A3-205ENST00000392004 CPA6Q8N4T0 437 aa10.47□□□□□ -0.73
COL6A3-205ENST00000392004 OR52K1Q8NGK4 314 aa10.47□□□□□ -0.73
COL6A3-205ENST00000392004 KCNV2Q8TDN2 545 aa10.47□□□□□ -0.73
COL6A3-205ENST00000392004 HERVK_113Q902F9 699 aa10.47□□□□□ -0.73
COL6A3-205ENST00000392004 FGFR1OP2Q9NVK5 253 aa10.47□□□□□ -0.73
COL6A3-205ENST00000392004 TBC1D14Q9P2M4 693 aa10.47□□□□□ -0.73
COL6A3-205ENST00000392004 SEPT3Q9UH03 358 aa10.47□□□□□ -0.73
COL6A3-205ENST00000392004 PDZK1P1A8MUH7 402 aa10.46□□□□□ -0.73
COL6A3-205ENST00000392004 FAM72CH0Y354 149 aa10.46□□□□□ -0.73
COL6A3-205ENST00000392004 SPAG7O75391 227 aa10.46□□□□□ -0.73
COL6A3-205ENST00000392004 FGFR3P22607 806 aa10.46□□□□□ -0.73
COL6A3-205ENST00000392004 TYK2P29597 1187 aa10.46□□□□□ -0.73
COL6A3-205ENST00000392004 CXCR3P49682 368 aa10.46□□□□□ -0.73
COL6A3-205ENST00000392004 LONRF1Q17RB8 773 aa10.46□□□□□ -0.73
COL6A3-205ENST00000392004 MPPE1Q53F39 396 aa10.46□□□□□ -0.73
COL6A3-205ENST00000392004 ALFQ53S48 1182 aa10.46□□□□□ -0.73
COL6A3-205ENST00000392004 ADGRF1Q5T601 910 aa10.46□□□□□ -0.73
Retrieved 100 of 20,778 RNA–protein pairs in 32 ms