RNA–Protein interactions for RNA: ENST00000389040.9

VPS53-202, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 1 (best)

Gene VPS53, Length 1,903 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-202ENST00000389040 GRIA2P42262 883 aa10.42□□□□□ -0.74
VPS53-202ENST00000389040 TNFRSF4P43489 277 aa10.42□□□□□ -0.74
VPS53-202ENST00000389040 HCAR3P49019 387 aa10.42□□□□□ -0.74
VPS53-202ENST00000389040 LRRC32Q14392 662 aa10.42□□□□□ -0.74
VPS53-202ENST00000389040 DMC1Q14565 340 aa10.42□□□□□ -0.74
VPS53-202ENST00000389040 NOMO1Q15155 1222 aa10.42□□□□□ -0.74
VPS53-202ENST00000389040 CCDC38Q502W7 563 aa10.42□□□□□ -0.74
VPS53-202ENST00000389040 TMEM196Q5HYL7 178 aa10.42□□□□□ -0.74
VPS53-202ENST00000389040 NADSYN1Q6IA69 706 aa10.42□□□□□ -0.74
VPS53-202ENST00000389040 NPNTQ6UXI9 565 aa10.42□□□□□ -0.74
VPS53-202ENST00000389040 ZNF783Q6ZMS7 281 aa10.42□□□□□ -0.74
VPS53-202ENST00000389040 MAMSTRQ6ZN01 415 aa10.42□□□□□ -0.74
VPS53-202ENST00000389040 TPRG1Q6ZUI0 275 aa10.42□□□□□ -0.74
VPS53-202ENST00000389040 B4GALNT4Q76KP1 1039 aa10.42□□□□□ -0.74
VPS53-202ENST00000389040 EXOC3L1Q86VI1 746 aa10.42□□□□□ -0.74
VPS53-202ENST00000389040 CHSY1Q86X52 802 aa10.42□□□□□ -0.74
VPS53-202ENST00000389040 VSIG1Q86XK7 387 aa10.42□□□□□ -0.74
VPS53-202ENST00000389040 PPIL6Q8IXY8 311 aa10.42□□□□□ -0.74
VPS53-202ENST00000389040 SIX5Q8N196 739 aa10.42□□□□□ -0.74
VPS53-202ENST00000389040 ST13P5Q8NFI4 369 aaPredicted RBP10.42□□□□□ -0.74
VPS53-202ENST00000389040 FIBINQ8TAL6 211 aa10.42□□□□□ -0.74
VPS53-202ENST00000389040 CPT1BQ92523 772 aa10.42□□□□□ -0.74
VPS53-202ENST00000389040 P3H4Q92791 437 aa10.42□□□□□ -0.74
VPS53-202ENST00000389040 ARHGEF2Q92974 986 aaKnown RBP10.42□□□□□ -0.74
VPS53-202ENST00000389040 PCDH18Q9HCL0 1135 aa10.42□□□□□ -0.74
VPS53-202ENST00000389040 CTNNAL1Q9UBT7 734 aa10.42□□□□□ -0.74
VPS53-202ENST00000389040 LGALS13Q9UHV8 139 aa10.42□□□□□ -0.74
VPS53-202ENST00000389040 FZD10Q9ULW2 581 aa10.42□□□□□ -0.74
VPS53-202ENST00000389040 RRP15Q9Y3B9 282 aaKnown RBP10.42□□□□□ -0.74
VPS53-202ENST00000389040 A0A1B0GVM2 712 aa10.41□□□□□ -0.74
VPS53-202ENST00000389040 KRBA1A5PL33 1030 aa10.41□□□□□ -0.74
VPS53-202ENST00000389040 TCAF2A6NFQ2 919 aa10.41□□□□□ -0.74
VPS53-202ENST00000389040 TMEM221A6NGB7 291 aa10.41□□□□□ -0.74
VPS53-202ENST00000389040 NEDD8-MDP1E9PL57 170 aa10.41□□□□□ -0.74
VPS53-202ENST00000389040 M0R296 226 aa10.41□□□□□ -0.74
VPS53-202ENST00000389040 APOL1O14791 398 aa10.41□□□□□ -0.74
VPS53-202ENST00000389040 ALOX15BO15296 676 aa10.41□□□□□ -0.74
VPS53-202ENST00000389040 GPR37L1O60883 481 aa10.41□□□□□ -0.74
VPS53-202ENST00000389040 CDH16O75309 829 aa10.41□□□□□ -0.74
VPS53-202ENST00000389040 MOCS2O96007 188 aaPredicted RBP10.41□□□□□ -0.74
VPS53-202ENST00000389040 TGM2P21980 687 aa10.41□□□□□ -0.74
VPS53-202ENST00000389040 IL4RP24394 825 aa10.41□□□□□ -0.74
VPS53-202ENST00000389040 RPS9P46781 194 aaKnown RBP10.41□□□□□ -0.74
VPS53-202ENST00000389040 CDH4P55283 916 aa10.41□□□□□ -0.74
VPS53-202ENST00000389040 FASTKD3Q14CZ7 662 aaKnown RBP10.41□□□□□ -0.74
VPS53-202ENST00000389040 EIF4HQ15056 248 aaKnown RBP10.41□□□□□ -0.74
VPS53-202ENST00000389040 HIF1AQ16665 826 aa10.41□□□□□ -0.74
VPS53-202ENST00000389040 GAB4Q2WGN9 574 aa10.41□□□□□ -0.74
VPS53-202ENST00000389040 HSF5Q4G112 596 aaPredicted RBP10.41□□□□□ -0.74
VPS53-202ENST00000389040 ANKRD20A8PQ5CZ79 823 aa10.41□□□□□ -0.74
VPS53-202ENST00000389040 FBXL22Q6P050 247 aa10.41□□□□□ -0.74
VPS53-202ENST00000389040 DARS2Q6PI48 645 aaKnown RBP10.41□□□□□ -0.74
VPS53-202ENST00000389040 TPGS1Q6ZTW0 290 aa10.41□□□□□ -0.74
VPS53-202ENST00000389040 SETD3Q86TU7 594 aaPredicted RBP10.41□□□□□ -0.74
VPS53-202ENST00000389040 ZBED8Q8IZ13 594 aa10.41□□□□□ -0.74
VPS53-202ENST00000389040 PQLC3Q8N755 202 aa10.41□□□□□ -0.74
VPS53-202ENST00000389040 NAT8LQ8N9F0 302 aa10.41□□□□□ -0.74
VPS53-202ENST00000389040 EPAS1Q99814 870 aa10.41□□□□□ -0.74
VPS53-202ENST00000389040 ZNF670Q9BS34 389 aa10.41□□□□□ -0.74
VPS53-202ENST00000389040 SNRNP25Q9BV90 132 aaKnown RBP10.41□□□□□ -0.74
VPS53-202ENST00000389040 PHACTR1Q9C0D0 580 aa10.41□□□□□ -0.74
VPS53-202ENST00000389040 FAM107BQ9H098 131 aa10.41□□□□□ -0.74
VPS53-202ENST00000389040 MFSD1Q9H3U5 465 aa10.41□□□□□ -0.74
VPS53-202ENST00000389040 PRDM16Q9HAZ2 1276 aa10.41□□□□□ -0.74
VPS53-202ENST00000389040 GPATCH2LQ9NWQ4 482 aa10.41□□□□□ -0.74
VPS53-202ENST00000389040 RCOR3Q9P2K3 495 aaPredicted RBP10.41□□□□□ -0.74
VPS53-202ENST00000389040 MYO16Q9Y6X6 1858 aa10.41□□□□□ -0.74
VPS53-202ENST00000389040 ZNF487B1APH4 448 aa10.41□□□□□ -0.74
VPS53-202ENST00000389040 GOLGA8MH3BSY2 632 aa10.41□□□□□ -0.74
VPS53-202ENST00000389040 SMAPO00193 183 aa10.41□□□□□ -0.74
VPS53-202ENST00000389040 FGF10O15520 208 aaPredicted RBP10.41□□□□□ -0.74
VPS53-202ENST00000389040 HOXD9P28356 352 aaPredicted RBP10.41□□□□□ -0.74
VPS53-202ENST00000389040 SLC6A4P31645 630 aa10.41□□□□□ -0.74
VPS53-202ENST00000389040 STIP1P31948 543 aaKnown RBP10.41□□□□□ -0.74
VPS53-202ENST00000389040 DGKGP49619 791 aa10.41□□□□□ -0.74
VPS53-202ENST00000389040 PDIA2Q13087 525 aaKnown RBP10.41□□□□□ -0.74
VPS53-202ENST00000389040 CA9Q16790 459 aa10.41□□□□□ -0.74
VPS53-202ENST00000389040 ANKRD22Q5VYY1 191 aa10.41□□□□□ -0.74
VPS53-202ENST00000389040 RAP1GAP2Q684P5 730 aa10.41□□□□□ -0.74
VPS53-202ENST00000389040 SLC9A4Q6AI14 798 aa10.41□□□□□ -0.74
VPS53-202ENST00000389040 KIAA0907Q7Z7F0 614 aaPredicted RBP10.41□□□□□ -0.74
VPS53-202ENST00000389040 ZC3H18Q86VM9 953 aaKnown RBP10.41□□□□□ -0.74
VPS53-202ENST00000389040 SPATS2Q86XZ4 545 aaKnown RBP10.41□□□□□ -0.74
VPS53-202ENST00000389040 ZNF683Q8IZ20 524 aa10.41□□□□□ -0.74
VPS53-202ENST00000389040 LGI2Q8N0V4 545 aa10.41□□□□□ -0.74
VPS53-202ENST00000389040 RIBC1Q8N443 379 aaPredicted RBP10.41□□□□□ -0.74
VPS53-202ENST00000389040 PLD5Q8N7P1 536 aa10.41□□□□□ -0.74
VPS53-202ENST00000389040 DDX51Q8N8A6 666 aaKnown RBP eCLIP10.41□□□□□ -0.74
VPS53-202ENST00000389040 PCDH19Q8TAB3 1148 aa10.41□□□□□ -0.74
VPS53-202ENST00000389040 WFIKKN2Q8TEU8 576 aa10.41□□□□□ -0.74
VPS53-202ENST00000389040 CLDN23Q96B33 292 aa10.41□□□□□ -0.74
VPS53-202ENST00000389040 FAF2Q96CS3 445 aa10.41□□□□□ -0.74
VPS53-202ENST00000389040 RPRD1AQ96P16 312 aaPredicted RBP10.41□□□□□ -0.74
VPS53-202ENST00000389040 ZYG11BQ9C0D3 744 aa10.41□□□□□ -0.74
VPS53-202ENST00000389040 SIK2Q9H0K1 926 aa10.41□□□□□ -0.74
VPS53-202ENST00000389040 LTB4R2Q9NPC1 389 aa10.41□□□□□ -0.74
VPS53-202ENST00000389040 INTS9Q9NV88 658 aaKnown RBP10.41□□□□□ -0.74
VPS53-202ENST00000389040 KIAA1522Q9P206 1035 aaPredicted RBP10.41□□□□□ -0.74
VPS53-202ENST00000389040 CA14Q9ULX7 337 aa10.41□□□□□ -0.74
VPS53-202ENST00000389040 TBC1D30Q9Y2I9 924 aa10.41□□□□□ -0.74
Retrieved 100 of 20,778 RNA–protein pairs in 19.2 ms