RNA–Protein interactions for RNA: ENST00000375299.7

UPF3A-202, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene UPF3A, Length 2,387 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-202ENST00000375299 C9IYK1 514 aa21.47■■□□□ 1.03
UPF3A-202ENST00000375299 HBP1O60381 514 aa21.47■■□□□ 1.03
UPF3A-202ENST00000375299 HADHAP40939 763 aa21.47■■□□□ 1.03
UPF3A-202ENST00000375299 GRM3Q14832 879 aa21.47■■□□□ 1.03
UPF3A-202ENST00000375299 PAFAH1B3Q15102 231 aaKnown RBP21.47■■□□□ 1.03
UPF3A-202ENST00000375299 LPCAT2Q7L5N7 544 aa21.47■■□□□ 1.03
UPF3A-202ENST00000375299 ZSCAN18Q8TBC5 510 aaPredicted RBP21.47■■□□□ 1.03
UPF3A-202ENST00000375299 TMIGD2Q96BF3 282 aa21.47■■□□□ 1.03
UPF3A-202ENST00000375299 DPEP3Q9H4B8 488 aa21.47■■□□□ 1.03
UPF3A-202ENST00000375299 UTP6Q9NYH9 597 aaKnown RBP21.47■■□□□ 1.03
UPF3A-202ENST00000375299 SQORQ9Y6N5 450 aa21.47■■□□□ 1.03
UPF3A-202ENST00000375299 H3BNH8 94 aa21.46■■□□□ 1.03
UPF3A-202ENST00000375299 KCNK1O00180 336 aa21.46■■□□□ 1.03
UPF3A-202ENST00000375299 DDHD2O94830 711 aa21.46■■□□□ 1.03
UPF3A-202ENST00000375299 PSME3P61289 254 aa21.46■■□□□ 1.03
UPF3A-202ENST00000375299 TP53INP2Q8IXH6 220 aa21.46■■□□□ 1.03
UPF3A-202ENST00000375299 STYXQ8WUJ0 223 aa21.46■■□□□ 1.03
UPF3A-202ENST00000375299 ZNF512Q96ME7 567 aaPredicted RBP21.46■■□□□ 1.03
UPF3A-202ENST00000375299 GPR22Q99680 433 aa21.46■■□□□ 1.03
UPF3A-202ENST00000375299 ZNF510Q9Y2H8 683 aa21.46■■□□□ 1.03
UPF3A-202ENST00000375299 PCDHGA7Q9Y5G6 932 aa21.46■■□□□ 1.03
UPF3A-202ENST00000375299 HSPA1AP0DMV8 641 aaKnown RBP21.46■■□□□ 1.03
UPF3A-202ENST00000375299 HSPA1BP0DMV9 641 aaKnown RBP21.46■■□□□ 1.03
UPF3A-202ENST00000375299 PTPN3P26045 913 aa21.46■■□□□ 1.03
UPF3A-202ENST00000375299 ADORA2BP29275 332 aa21.46■■□□□ 1.03
UPF3A-202ENST00000375299 GLRBP48167 497 aa21.46■■□□□ 1.03
UPF3A-202ENST00000375299 PSMD8P48556 350 aa21.46■■□□□ 1.03
UPF3A-202ENST00000375299 BCAT1P54687 386 aa21.46■■□□□ 1.03
UPF3A-202ENST00000375299 POU5F1BQ06416 359 aa21.46■■□□□ 1.03
UPF3A-202ENST00000375299 TRIM25Q14258 630 aaKnown RBP21.46■■□□□ 1.03
UPF3A-202ENST00000375299 OR6B3Q8NGW1 331 aa21.46■■□□□ 1.03
UPF3A-202ENST00000375299 LRTOMTQ8WZ04 291 aa21.46■■□□□ 1.03
UPF3A-202ENST00000375299 TOP1MTQ969P6 601 aa21.46■■□□□ 1.03
UPF3A-202ENST00000375299 MRPL40Q9NQ50 206 aaKnown RBP21.46■■□□□ 1.03
UPF3A-202ENST00000375299 TMPRSS4Q9NRS4 437 aa21.46■■□□□ 1.03
UPF3A-202ENST00000375299 PNPLA3Q9NST1 481 aa21.46■■□□□ 1.03
UPF3A-202ENST00000375299 MYRFQ9Y2G1 1151 aa21.46■■□□□ 1.03
UPF3A-202ENST00000375299 C22orf31O95567 290 aa21.45■■□□□ 1.02
UPF3A-202ENST00000375299 MATKP42679 507 aa21.45■■□□□ 1.02
UPF3A-202ENST00000375299 RPL34P49207 117 aaKnown RBP21.45■■□□□ 1.02
UPF3A-202ENST00000375299 CERCAMQ5T4B2 595 aa21.45■■□□□ 1.02
UPF3A-202ENST00000375299 ACBD5Q5T8D3 534 aaPredicted RBP21.45■■□□□ 1.02
UPF3A-202ENST00000375299 POTEHQ6S545 545 aa21.45■■□□□ 1.02
UPF3A-202ENST00000375299 GK5Q6ZS86 529 aa21.45■■□□□ 1.02
UPF3A-202ENST00000375299 DEFB106AQ8N104 65 aa21.45■■□□□ 1.02
UPF3A-202ENST00000375299 TRPC4APQ8TEL6 797 aa21.45■■□□□ 1.02
UPF3A-202ENST00000375299 SPATA33Q96N06 139 aa21.45■■□□□ 1.02
UPF3A-202ENST00000375299 BIRC8Q96P09 236 aa21.45■■□□□ 1.02
UPF3A-202ENST00000375299 TMEM79Q9BSE2 394 aa21.45■■□□□ 1.02
UPF3A-202ENST00000375299 TRPV6Q9H1D0 765 aa21.45■■□□□ 1.02
UPF3A-202ENST00000375299 CAAP1Q9H8G2 361 aa21.45■■□□□ 1.02
UPF3A-202ENST00000375299 PPEF2O14830 753 aa21.45■■□□□ 1.02
UPF3A-202ENST00000375299 XPO1O14980 1071 aaKnown RBP21.45■■□□□ 1.02
UPF3A-202ENST00000375299 PHGDHO43175 533 aaKnown RBP21.45■■□□□ 1.02
UPF3A-202ENST00000375299 SLC26A2P50443 739 aa21.45■■□□□ 1.02
UPF3A-202ENST00000375299 RHDQ02161 417 aa21.45■■□□□ 1.02
UPF3A-202ENST00000375299 GLRA4Q5JXX5 417 aa21.45■■□□□ 1.02
UPF3A-202ENST00000375299 IFNLR1Q8IU57 520 aaPredicted RBP21.45■■□□□ 1.02
UPF3A-202ENST00000375299 PCDH20Q8N6Y1 951 aaKnown RBP21.45■■□□□ 1.02
UPF3A-202ENST00000375299 ANKRD52Q8NB46 1076 aa21.45■■□□□ 1.02
UPF3A-202ENST00000375299 KCTD4Q8WVF5 259 aa21.45■■□□□ 1.02
UPF3A-202ENST00000375299 MAELQ96JY0 434 aaKnown RBP21.45■■□□□ 1.02
UPF3A-202ENST00000375299 PLEKHG4BQ96PX9 1271 aa21.45■■□□□ 1.02
UPF3A-202ENST00000375299 DNAI2Q9GZS0 605 aa21.45■■□□□ 1.02
UPF3A-202ENST00000375299 SMARCAD1Q9H4L7 1026 aa21.45■■□□□ 1.02
UPF3A-202ENST00000375299 MAGED2Q9UNF1 606 aaPredicted RBP21.45■■□□□ 1.02
UPF3A-202ENST00000375299 RUVBL2Q9Y230 463 aaKnown RBP21.45■■□□□ 1.02
UPF3A-202ENST00000375299 UTRNP46939 3433 aa21.45■■□□□ 1.02
UPF3A-202ENST00000375299 KCNU1A8MYU2 1149 aa21.44■■□□□ 1.02
UPF3A-202ENST00000375299 CSPG5O95196 566 aa21.44■■□□□ 1.02
UPF3A-202ENST00000375299 SAT1P21673 171 aa21.44■■□□□ 1.02
UPF3A-202ENST00000375299 TUBA4AP68366 448 aa21.44■■□□□ 1.02
UPF3A-202ENST00000375299 IGBP1P78318 339 aa21.44■■□□□ 1.02
UPF3A-202ENST00000375299 SLC25A52Q3SY17 297 aa21.44■■□□□ 1.02
UPF3A-202ENST00000375299 KRT80Q6KB66 452 aa21.44■■□□□ 1.02
UPF3A-202ENST00000375299 LRRC8EQ6NSJ5 796 aa21.44■■□□□ 1.02
UPF3A-202ENST00000375299 KLHL35Q6PF15 583 aa21.44■■□□□ 1.02
UPF3A-202ENST00000375299 MAMDC4Q6UXC1 1216 aa21.44■■□□□ 1.02
UPF3A-202ENST00000375299 PTAR1Q7Z6K3 402 aaPredicted RBP21.44■■□□□ 1.02
UPF3A-202ENST00000375299 UNC93AQ86WB7 457 aa21.44■■□□□ 1.02
UPF3A-202ENST00000375299 FSTL5Q8N475 847 aaPredicted RBP21.44■■□□□ 1.02
UPF3A-202ENST00000375299 KDM1BQ8NB78 822 aa21.44■■□□□ 1.02
UPF3A-202ENST00000375299 RMND5BQ96G75 393 aaPredicted RBP21.44■■□□□ 1.02
UPF3A-202ENST00000375299 SPATC1LQ9H0A9 340 aa21.44■■□□□ 1.02
UPF3A-202ENST00000375299 PCDHAC1Q9H158 963 aa21.44■■□□□ 1.02
UPF3A-202ENST00000375299 LIN28AQ9H9Z2 209 aaKnown RBP21.44■■□□□ 1.02
UPF3A-202ENST00000375299 SETD4Q9NVD3 440 aa21.44■■□□□ 1.02
UPF3A-202ENST00000375299 GTF3C5Q9Y5Q8 519 aaPredicted RBP21.44■■□□□ 1.02
UPF3A-202ENST00000375299 TANC1Q9C0D5 1861 aa21.44■■□□□ 1.02
UPF3A-202ENST00000375299 TARM1B6A8C7 271 aa21.44■■□□□ 1.02
UPF3A-202ENST00000375299 HCRTO43612 131 aa21.44■■□□□ 1.02
UPF3A-202ENST00000375299 ZBTB7AO95365 584 aa21.44■■□□□ 1.02
UPF3A-202ENST00000375299 FGFR3P22607 806 aa21.44■■□□□ 1.02
UPF3A-202ENST00000375299 ACADSBP45954 432 aa21.44■■□□□ 1.02
UPF3A-202ENST00000375299 USP10Q14694 798 aaKnown RBP21.44■■□□□ 1.02
UPF3A-202ENST00000375299 KCTD11Q693B1 232 aa21.44■■□□□ 1.02
UPF3A-202ENST00000375299 DUS1LQ6P1R4 473 aaKnown RBP21.44■■□□□ 1.02
UPF3A-202ENST00000375299 DHRS4L2Q6PKH6 230 aa21.44■■□□□ 1.02
UPF3A-202ENST00000375299 FNDC8Q8TC99 324 aa21.44■■□□□ 1.02
UPF3A-202ENST00000375299 UNC93B1Q9H1C4 597 aa21.44■■□□□ 1.02
Retrieved 100 of 20,778 RNA–protein pairs in 28.9 ms