RNA–Protein interactions for RNA: ENST00000375274.6

PTCH1-203, Transcript of patched 1, humanhuman

TSL 5 BASIC

Gene PTCH1, Length 4,720 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCH1-203ENST00000375274 PEX11AO75192 247 aa11.69□□□□□ -0.54
PTCH1-203ENST00000375274 HNRNPLP14866 589 aaKnown RBP eCLIP11.69□□□□□ -0.54
PTCH1-203ENST00000375274 ITGB6P18564 788 aa11.69□□□□□ -0.54
PTCH1-203ENST00000375274 RRM2P31350 389 aa11.69□□□□□ -0.54
PTCH1-203ENST00000375274 FOXN2P32314 431 aa11.69□□□□□ -0.54
PTCH1-203ENST00000375274 CYP2C18P33260 490 aa11.69□□□□□ -0.54
PTCH1-203ENST00000375274 MATKP42679 507 aa11.69□□□□□ -0.54
PTCH1-203ENST00000375274 EIF2B2P49770 351 aaKnown RBP11.69□□□□□ -0.54
PTCH1-203ENST00000375274 CLCN5P51795 746 aa11.69□□□□□ -0.54
PTCH1-203ENST00000375274 CTBP1Q13363 440 aa11.69□□□□□ -0.54
PTCH1-203ENST00000375274 CELF3Q5SZQ8 465 aaKnown RBP11.69□□□□□ -0.54
PTCH1-203ENST00000375274 WSCD1Q658N2 575 aa11.69□□□□□ -0.54
PTCH1-203ENST00000375274 DNAJB14Q8TBM8 379 aa11.69□□□□□ -0.54
PTCH1-203ENST00000375274 SPPL2AQ8TCT8 520 aa11.69□□□□□ -0.54
PTCH1-203ENST00000375274 COPS5Q92905 334 aa11.69□□□□□ -0.54
PTCH1-203ENST00000375274 OSBPL11Q9BXB4 747 aa11.69□□□□□ -0.54
PTCH1-203ENST00000375274 CADM1Q9BY67 442 aaKnown RBP11.69□□□□□ -0.54
PTCH1-203ENST00000375274 ABHD16BQ9H3Z7 469 aa11.69□□□□□ -0.54
PTCH1-203ENST00000375274 TMEM59LQ9UK28 342 aa11.69□□□□□ -0.54
PTCH1-203ENST00000375274 SNCAIPQ9Y6H5 919 aa11.69□□□□□ -0.54
PTCH1-203ENST00000375274 FAM20BO75063 409 aa11.68□□□□□ -0.54
PTCH1-203ENST00000375274 ERBB2P04626 1255 aa11.68□□□□□ -0.54
PTCH1-203ENST00000375274 LYNP07948 512 aa11.68□□□□□ -0.54
PTCH1-203ENST00000375274 CCNB1P14635 433 aa11.68□□□□□ -0.54
PTCH1-203ENST00000375274 ZNF7P17097 686 aaPredicted RBP11.68□□□□□ -0.54
PTCH1-203ENST00000375274 SP100P23497 879 aaPredicted RBP11.68□□□□□ -0.54
PTCH1-203ENST00000375274 WDR4P57081 412 aaKnown RBP11.68□□□□□ -0.54
PTCH1-203ENST00000375274 CRY2Q49AN0 593 aa11.68□□□□□ -0.54
PTCH1-203ENST00000375274 LIN52Q52LA3 116 aa11.68□□□□□ -0.54
PTCH1-203ENST00000375274 PPP1R26Q5T8A7 1209 aaPredicted RBP11.68□□□□□ -0.54
PTCH1-203ENST00000375274 ANKS1BQ7Z6G8 1248 aa11.68□□□□□ -0.54
PTCH1-203ENST00000375274 PLD5Q8N7P1 536 aa11.68□□□□□ -0.54
PTCH1-203ENST00000375274 APOL4Q9BPW4 351 aa11.68□□□□□ -0.54
PTCH1-203ENST00000375274 TBCDQ9BTW9 1192 aa11.68□□□□□ -0.54
PTCH1-203ENST00000375274 PNPLA3Q9NST1 481 aa11.68□□□□□ -0.54
PTCH1-203ENST00000375274 GIMAP4Q9NUV9 329 aa11.68□□□□□ -0.54
PTCH1-203ENST00000375274 TAS2R1Q9NYW7 299 aa11.68□□□□□ -0.54
PTCH1-203ENST00000375274 TRPM5Q9NZQ8 1165 aa11.68□□□□□ -0.54
PTCH1-203ENST00000375274 KNDC1Q76NI1 1749 aa11.68□□□□□ -0.54
PTCH1-203ENST00000375274 DLG5Q8TDM6 1919 aa11.68□□□□□ -0.54
PTCH1-203ENST00000375274 MED26O95402 600 aa11.68□□□□□ -0.54
PTCH1-203ENST00000375274 HK2P52789 917 aa11.68□□□□□ -0.54
PTCH1-203ENST00000375274 HIRAP54198 1017 aaPredicted RBP11.68□□□□□ -0.54
PTCH1-203ENST00000375274 GBE1Q04446 702 aa11.68□□□□□ -0.54
PTCH1-203ENST00000375274 EPS8Q12929 822 aa11.68□□□□□ -0.54
PTCH1-203ENST00000375274 CDC16Q13042 620 aa11.68□□□□□ -0.54
PTCH1-203ENST00000375274 INSCQ1MX18 579 aa11.68□□□□□ -0.54
PTCH1-203ENST00000375274 ARMCX4Q5H9R4 360 aa11.68□□□□□ -0.54
PTCH1-203ENST00000375274 ZNF280DQ6N043 979 aa11.68□□□□□ -0.54
PTCH1-203ENST00000375274 CATSPERGQ6ZRH7 1159 aa11.68□□□□□ -0.54
PTCH1-203ENST00000375274 NECAB2Q7Z6G3 386 aa11.68□□□□□ -0.54
PTCH1-203ENST00000375274 HEATR4Q86WZ0 1026 aa11.68□□□□□ -0.54
PTCH1-203ENST00000375274 C8orf59Q8N0T1 100 aaPredicted RBP11.68□□□□□ -0.54
PTCH1-203ENST00000375274 NETO2Q8NC67 525 aa11.68□□□□□ -0.54
PTCH1-203ENST00000375274 ZNF483Q8TF39 744 aaPredicted RBP11.68□□□□□ -0.54
PTCH1-203ENST00000375274 RTKNQ9BST9 563 aa11.68□□□□□ -0.54
PTCH1-203ENST00000375274 CCDC28BQ9BUN5 200 aa11.68□□□□□ -0.54
PTCH1-203ENST00000375274 CEP44Q9C0F1 390 aa11.68□□□□□ -0.54
PTCH1-203ENST00000375274 CAMTA1Q9Y6Y1 1673 aa11.68□□□□□ -0.54
PTCH1-203ENST00000375274 PAPSS1O43252 624 aaPredicted RBP11.68□□□□□ -0.54
PTCH1-203ENST00000375274 TSPAN8P19075 237 aa11.68□□□□□ -0.54
PTCH1-203ENST00000375274 GTF2A2P52657 109 aa11.68□□□□□ -0.54
PTCH1-203ENST00000375274 DDR2Q16832 855 aa11.68□□□□□ -0.54
PTCH1-203ENST00000375274 IL27RAQ6UWB1 636 aa11.68□□□□□ -0.54
PTCH1-203ENST00000375274 OR8H2Q8N162 312 aa11.68□□□□□ -0.54
PTCH1-203ENST00000375274 SFRP1Q8N474 314 aa11.68□□□□□ -0.54
PTCH1-203ENST00000375274 ZNF276Q8N554 614 aa11.68□□□□□ -0.54
PTCH1-203ENST00000375274 ZFYVE19Q96K21 471 aa11.68□□□□□ -0.54
PTCH1-203ENST00000375274 GAD1Q99259 594 aa11.68□□□□□ -0.54
PTCH1-203ENST00000375274 ATP13A1Q9HD20 1204 aa11.68□□□□□ -0.54
PTCH1-203ENST00000375274 TLR8Q9NR97 1041 aaKnown RBP11.68□□□□□ -0.54
PTCH1-203ENST00000375274 SFMBT1Q9UHJ3 866 aa11.68□□□□□ -0.54
PTCH1-203ENST00000375274 TRIM24O15164 1050 aa11.68□□□□□ -0.54
PTCH1-203ENST00000375274 GJB1P08034 283 aa11.68□□□□□ -0.54
PTCH1-203ENST00000375274 ALOX15P16050 662 aaPredicted RBP11.68□□□□□ -0.54
PTCH1-203ENST00000375274 FMO4P31512 558 aa11.68□□□□□ -0.54
PTCH1-203ENST00000375274 ALDH7A1P49419 539 aaKnown RBP11.68□□□□□ -0.54
PTCH1-203ENST00000375274 KHDRBS1Q07666 443 aaKnown RBP eCLIP11.68□□□□□ -0.54
PTCH1-203ENST00000375274 EML3Q32P44 896 aa11.68□□□□□ -0.54
PTCH1-203ENST00000375274 FAM117BQ6P1L5 589 aa11.68□□□□□ -0.54
PTCH1-203ENST00000375274 GLT6D1Q7Z4J2 308 aa11.68□□□□□ -0.54
PTCH1-203ENST00000375274 GPSM1Q86YR5 675 aa11.68□□□□□ -0.54
PTCH1-203ENST00000375274 CARNMT1Q8N4J0 409 aa11.68□□□□□ -0.54
PTCH1-203ENST00000375274 RAET1EQ8TD07 263 aa11.68□□□□□ -0.54
PTCH1-203ENST00000375274 TRPC4APQ8TEL6 797 aa11.68□□□□□ -0.54
PTCH1-203ENST00000375274 ZNF317Q96PQ6 595 aaPredicted RBP11.68□□□□□ -0.54
PTCH1-203ENST00000375274 POLR1EQ9GZS1 481 aaKnown RBP11.68□□□□□ -0.54
PTCH1-203ENST00000375274 CAB39LQ9H9S4 337 aa11.68□□□□□ -0.54
PTCH1-203ENST00000375274 ATAD3AQ9NVI7 634 aa11.68□□□□□ -0.54
PTCH1-203ENST00000375274 GOLGA4Q13439 2230 aaKnown RBP11.68□□□□□ -0.54
PTCH1-203ENST00000375274 BUD23O43709 281 aaKnown RBP11.67□□□□□ -0.54
PTCH1-203ENST00000375274 B4GALT4O60513 344 aa11.67□□□□□ -0.54
PTCH1-203ENST00000375274 IFNA14P01570 189 aa11.67□□□□□ -0.54
PTCH1-203ENST00000375274 CKMP06732 381 aa11.67□□□□□ -0.54
PTCH1-203ENST00000375274 MLNP12872 115 aa11.67□□□□□ -0.54
PTCH1-203ENST00000375274 HGFP14210 728 aa11.67□□□□□ -0.54
PTCH1-203ENST00000375274 GSSP48637 474 aa11.67□□□□□ -0.54
PTCH1-203ENST00000375274 ST13P50502 369 aaKnown RBP11.67□□□□□ -0.54
PTCH1-203ENST00000375274 ZNF157P51786 506 aaPredicted RBP11.67□□□□□ -0.54
PTCH1-203ENST00000375274 KPNA1P52294 538 aaPredicted RBP11.67□□□□□ -0.54
Retrieved 100 of 20,778 RNA–protein pairs in 19.9 ms