RNA–Protein interactions for RNA: ENST00000304636.7

COL3A1-201, Transcript of collagen type III alpha 1 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL3A1, Length 5,543 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL3A1-201ENST00000304636 SCNN1BP51168 640 aa13.01□□□□□ -0.33
COL3A1-201ENST00000304636 MTTPP55157 894 aa13.01□□□□□ -0.33
COL3A1-201ENST00000304636 MTA1Q13330 715 aa13.01□□□□□ -0.33
COL3A1-201ENST00000304636 FAM187BQ17R55 369 aa13.01□□□□□ -0.33
COL3A1-201ENST00000304636 INSCQ1MX18 579 aa13.01□□□□□ -0.33
COL3A1-201ENST00000304636 IL27RAQ6UWB1 636 aa13.01□□□□□ -0.33
COL3A1-201ENST00000304636 FGD2Q7Z6J4 655 aa13.01□□□□□ -0.33
COL3A1-201ENST00000304636 MFSD14AQ96MC6 490 aa13.01□□□□□ -0.33
COL3A1-201ENST00000304636 CLEC4MQ9H2X3 399 aaPredicted RBP13.01□□□□□ -0.33
COL3A1-201ENST00000304636 CRNNQ9UBG3 495 aaPredicted RBP13.01□□□□□ -0.33
COL3A1-201ENST00000304636 CHKBQ9Y259 395 aa13.01□□□□□ -0.33
COL3A1-201ENST00000304636 DYRK1BQ9Y463 629 aa13.01□□□□□ -0.33
COL3A1-201ENST00000304636 TNPO3Q9Y5L0 923 aaKnown RBP13.01□□□□□ -0.33
COL3A1-201ENST00000304636 SLC12A8A0AV02 714 aa13.01□□□□□ -0.33
COL3A1-201ENST00000304636 CAPN8A6NHC0 703 aa13.01□□□□□ -0.33
COL3A1-201ENST00000304636 AVILO75366 819 aa13.01□□□□□ -0.33
COL3A1-201ENST00000304636 SPIRE1Q08AE8 756 aa13.01□□□□□ -0.33
COL3A1-201ENST00000304636 ANGPT1Q15389 498 aa13.01□□□□□ -0.33
COL3A1-201ENST00000304636 DNAJC14Q6Y2X3 702 aaPredicted RBP13.01□□□□□ -0.33
COL3A1-201ENST00000304636 UNC93AQ86WB7 457 aa13.01□□□□□ -0.33
COL3A1-201ENST00000304636 WNT8BQ93098 351 aa13.01□□□□□ -0.33
COL3A1-201ENST00000304636 SMARCD1Q96GM5 515 aa13.01□□□□□ -0.33
COL3A1-201ENST00000304636 WDR12Q9GZL7 423 aaKnown RBP13.01□□□□□ -0.33
COL3A1-201ENST00000304636 SEMA4BQ9NPR2 832 aaPredicted RBP13.01□□□□□ -0.33
COL3A1-201ENST00000304636 ITM2BQ9Y287 266 aa13.01□□□□□ -0.33
COL3A1-201ENST00000304636 R3HDM2Q9Y2K5 976 aaKnown RBP13.01□□□□□ -0.33
COL3A1-201ENST00000304636 RPTORQ8N122 1335 aa13.01□□□□□ -0.33
COL3A1-201ENST00000304636 CABYRO75952 493 aa13.01□□□□□ -0.33
COL3A1-201ENST00000304636 ZNF7P17097 686 aaPredicted RBP13.01□□□□□ -0.33
COL3A1-201ENST00000304636 PIK3CGP48736 1102 aa13.01□□□□□ -0.33
COL3A1-201ENST00000304636 PTP4A2Q12974 167 aa13.01□□□□□ -0.33
COL3A1-201ENST00000304636 ZIK1Q3SY52 487 aaPredicted RBP13.01□□□□□ -0.33
COL3A1-201ENST00000304636 KHDC1Q4VXA5 237 aaKnown RBP13.01□□□□□ -0.33
COL3A1-201ENST00000304636 SLC27A1Q6PCB7 646 aa13.01□□□□□ -0.33
COL3A1-201ENST00000304636 TEKT5Q96M29 485 aa13.01□□□□□ -0.33
COL3A1-201ENST00000304636 BTBD9Q96Q07 612 aa13.01□□□□□ -0.33
COL3A1-201ENST00000304636 SH3GLB1Q9Y371 365 aa13.01□□□□□ -0.33
COL3A1-201ENST00000304636 PIPSLA2A3N6 862 aa13.01□□□□□ -0.33
COL3A1-201ENST00000304636 TRMUO75648 421 aaKnown RBP13.01□□□□□ -0.33
COL3A1-201ENST00000304636 RHOAP61586 193 aa13.01□□□□□ -0.33
COL3A1-201ENST00000304636 RPS7P62081 194 aaKnown RBP13.01□□□□□ -0.33
COL3A1-201ENST00000304636 KLF10Q13118 480 aa13.01□□□□□ -0.33
COL3A1-201ENST00000304636 KLHL17Q6TDP4 642 aa13.01□□□□□ -0.33
COL3A1-201ENST00000304636 TNS4Q8IZW8 715 aa13.01□□□□□ -0.33
COL3A1-201ENST00000304636 LPCAT1Q8NF37 534 aa13.01□□□□□ -0.33
COL3A1-201ENST00000304636 FAM45AQ8TCE6 357 aa13.01□□□□□ -0.33
COL3A1-201ENST00000304636 KCTD4Q8WVF5 259 aa13.01□□□□□ -0.33
COL3A1-201ENST00000304636 STARD8Q92502 1023 aa13.01□□□□□ -0.33
COL3A1-201ENST00000304636 TBCDQ9BTW9 1192 aa13.01□□□□□ -0.33
COL3A1-201ENST00000304636 ATXN3LQ9H3M9 355 aa13.01□□□□□ -0.33
COL3A1-201ENST00000304636 GALNT8Q9NY28 637 aa13.01□□□□□ -0.33
COL3A1-201ENST00000304636 TMEM216Q9P0N5 145 aa13.01□□□□□ -0.33
COL3A1-201ENST00000304636 MYL12BO14950 172 aa13□□□□□ -0.33
COL3A1-201ENST00000304636 PCNAP12004 261 aa13□□□□□ -0.33
COL3A1-201ENST00000304636 DSG3P32926 999 aa13□□□□□ -0.33
COL3A1-201ENST00000304636 GRIK3Q13003 919 aa13□□□□□ -0.33
COL3A1-201ENST00000304636 PFKFB4Q16877 469 aa13□□□□□ -0.33
COL3A1-201ENST00000304636 GPSM1Q86YR5 675 aa13□□□□□ -0.33
COL3A1-201ENST00000304636 POP5Q969H6 163 aaKnown RBP13□□□□□ -0.33
COL3A1-201ENST00000304636 MROH8Q9H579 483 aa13□□□□□ -0.33
COL3A1-201ENST00000304636 EHD3Q9NZN3 535 aa13□□□□□ -0.33
COL3A1-201ENST00000304636 TCRBV7S2A1N4TA0A589 114 aa13□□□□□ -0.33
COL3A1-201ENST00000304636 INSRRP14616 1297 aa13□□□□□ -0.33
COL3A1-201ENST00000304636 SLC15A2Q16348 729 aa13□□□□□ -0.33
COL3A1-201ENST00000304636 ZNF57Q68EA5 555 aaPredicted RBP13□□□□□ -0.33
COL3A1-201ENST00000304636 FAM83AQ86UY5 434 aa13□□□□□ -0.33
COL3A1-201ENST00000304636 HPS6Q86YV9 775 aa13□□□□□ -0.33
COL3A1-201ENST00000304636 FAM47BQ8NA70 645 aa13□□□□□ -0.33
COL3A1-201ENST00000304636 POC5Q8NA72 575 aa13□□□□□ -0.33
COL3A1-201ENST00000304636 EZH1Q92800 747 aaPredicted RBP13□□□□□ -0.33
COL3A1-201ENST00000304636 KREMEN1Q96MU8 473 aa13□□□□□ -0.33
COL3A1-201ENST00000304636 CADM1Q9BY67 442 aaKnown RBP13□□□□□ -0.33
COL3A1-201ENST00000304636 PRDM5Q9NQX1 630 aaPredicted RBP13□□□□□ -0.33
COL3A1-201ENST00000304636 NID2Q14112 1375 aa13□□□□□ -0.33
COL3A1-201ENST00000304636 FESP07332 822 aa13□□□□□ -0.33
COL3A1-201ENST00000304636 GSSP48637 474 aa13□□□□□ -0.33
COL3A1-201ENST00000304636 C11orf96Q7Z7L8 435 aa13□□□□□ -0.33
COL3A1-201ENST00000304636 PTGR2Q8N8N7 351 aaPredicted RBP13□□□□□ -0.33
COL3A1-201ENST00000304636 REPS2Q8NFH8 660 aa13□□□□□ -0.33
COL3A1-201ENST00000304636 KBTBD8Q8NFY9 601 aa13□□□□□ -0.33
COL3A1-201ENST00000304636 DNAJB14Q8TBM8 379 aa13□□□□□ -0.33
COL3A1-201ENST00000304636 SPOCK2Q92563 424 aa13□□□□□ -0.33
COL3A1-201ENST00000304636 SERPINB11Q96P15 392 aa13□□□□□ -0.33
COL3A1-201ENST00000304636 EMILIN2Q9BXX0 1053 aa13□□□□□ -0.33
COL3A1-201ENST00000304636 TKTL2Q9H0I9 626 aa13□□□□□ -0.33
COL3A1-201ENST00000304636 SETD4Q9NVD3 440 aa13□□□□□ -0.33
COL3A1-201ENST00000304636 CRYL1Q9Y2S2 319 aa13□□□□□ -0.33
COL3A1-201ENST00000304636 BAZ2BQ9UIF8 2168 aaKnown RBP13□□□□□ -0.33
COL3A1-201ENST00000304636 CNTNAP2Q9UHC6 1331 aa13□□□□□ -0.33
COL3A1-201ENST00000304636 HADHBP55084 474 aaKnown RBP13□□□□□ -0.33
COL3A1-201ENST00000304636 CAMK2GQ13555 558 aaPredicted RBP13□□□□□ -0.33
COL3A1-201ENST00000304636 APOBEC3HQ6NTF7 200 aaKnown RBP13□□□□□ -0.33
COL3A1-201ENST00000304636 NUDT18Q6ZVK8 323 aa13□□□□□ -0.33
COL3A1-201ENST00000304636 ADAM32Q8TC27 787 aa13□□□□□ -0.33
COL3A1-201ENST00000304636 MRPL48Q96GC5 212 aaKnown RBP13□□□□□ -0.33
COL3A1-201ENST00000304636 CLPTM1LQ96KA5 538 aa13□□□□□ -0.33
COL3A1-201ENST00000304636 ZNF112Q9UJU3 913 aa13□□□□□ -0.33
COL3A1-201ENST00000304636 PADI4Q9UM07 663 aa13□□□□□ -0.33
COL3A1-201ENST00000304636 GNEQ9Y223 722 aaKnown RBP13□□□□□ -0.33
COL3A1-201ENST00000304636 PRG3Q9Y2Y8 225 aaPredicted RBP13□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 30.4 ms