RNA–Protein interactions for RNA: ENST00000563984.1

VPS35-205, Transcript of VPS35, retromer complex component, humanhuman

TSL 2

Gene VPS35, Length 775 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-205ENST00000563984 ALDH3A2P51648 485 aa5.3□□□□□ -1.56
VPS35-205ENST00000563984 VAV2P52735 878 aa5.3□□□□□ -1.56
VPS35-205ENST00000563984 NOP14P78316 857 aaKnown RBP5.3□□□□□ -1.56
VPS35-205ENST00000563984 GSTO1P78417 241 aa5.3□□□□□ -1.56
VPS35-205ENST00000563984 TLE1Q04724 770 aa5.3□□□□□ -1.56
VPS35-205ENST00000563984 FOXI1Q12951 378 aa5.3□□□□□ -1.56
VPS35-205ENST00000563984 ITGA7Q13683 1181 aa5.3□□□□□ -1.56
VPS35-205ENST00000563984 COTL1Q14019 142 aa5.3□□□□□ -1.56
VPS35-205ENST00000563984 DOC2AQ14183 400 aa5.3□□□□□ -1.56
VPS35-205ENST00000563984 GRM3Q14832 879 aa5.3□□□□□ -1.56
VPS35-205ENST00000563984 MEA1Q16626 185 aa5.3□□□□□ -1.56
VPS35-205ENST00000563984 ALG11Q2TAA5 492 aa5.3□□□□□ -1.56
VPS35-205ENST00000563984 AARDQ4LEZ3 155 aa5.3□□□□□ -1.56
VPS35-205ENST00000563984 PPP6R3Q5H9R7 873 aaPredicted RBP5.3□□□□□ -1.56
VPS35-205ENST00000563984 GKAP1Q5VSY0 366 aaPredicted RBP5.3□□□□□ -1.56
VPS35-205ENST00000563984 PDPK2PQ6A1A2 396 aa5.3□□□□□ -1.56
VPS35-205ENST00000563984 KRTAP5-11Q6L8G4 156 aa5.3□□□□□ -1.56
VPS35-205ENST00000563984 WDR73Q6P4I2 378 aa5.3□□□□□ -1.56
VPS35-205ENST00000563984 SHQ1Q6PI26 577 aaKnown RBP5.3□□□□□ -1.56
VPS35-205ENST00000563984 RANBP10Q6VN20 620 aa5.3□□□□□ -1.56
VPS35-205ENST00000563984 ZNF704Q6ZNC4 412 aaPredicted RBP5.3□□□□□ -1.56
VPS35-205ENST00000563984 GATAD2AQ86YP4 633 aa5.3□□□□□ -1.56
VPS35-205ENST00000563984 TPH2Q8IWU9 490 aa5.3□□□□□ -1.56
VPS35-205ENST00000563984 ZNF565Q8N9K5 539 aa5.3□□□□□ -1.56
VPS35-205ENST00000563984 DNAAF3Q8N9W5 541 aa5.3□□□□□ -1.56
VPS35-205ENST00000563984 CCDC63Q8NA47 563 aa5.3□□□□□ -1.56
VPS35-205ENST00000563984 BCAS4Q8TDM0 211 aa5.3□□□□□ -1.56
VPS35-205ENST00000563984 SLC26A7Q8TE54 656 aa5.3□□□□□ -1.56
VPS35-205ENST00000563984 ADAMTS18Q8TE60 1221 aa5.3□□□□□ -1.56
VPS35-205ENST00000563984 HERVK_113Q902F9 699 aa5.3□□□□□ -1.56
VPS35-205ENST00000563984 ZNF653Q96CK0 615 aa5.3□□□□□ -1.56
VPS35-205ENST00000563984 MAELQ96JY0 434 aaKnown RBP5.3□□□□□ -1.56
VPS35-205ENST00000563984 CEP19Q96LK0 163 aa5.3□□□□□ -1.56
VPS35-205ENST00000563984 CCDC138Q96M89 665 aa5.3□□□□□ -1.56
VPS35-205ENST00000563984 CMTM3Q96MX0 182 aa5.3□□□□□ -1.56
VPS35-205ENST00000563984 DMRTA2Q96SC8 542 aa5.3□□□□□ -1.56
VPS35-205ENST00000563984 CRB3Q9BUF7 120 aa5.3□□□□□ -1.56
VPS35-205ENST00000563984 PACSIN1Q9BY11 444 aa5.3□□□□□ -1.56
VPS35-205ENST00000563984 GCOM2Q9BZD3 368 aaPredicted RBP5.3□□□□□ -1.56
VPS35-205ENST00000563984 MYLK2Q9H1R3 596 aa5.3□□□□□ -1.56
VPS35-205ENST00000563984 ZSCAN16Q9H4T2 348 aaPredicted RBP5.3□□□□□ -1.56
VPS35-205ENST00000563984 HAUS4Q9H6D7 363 aa5.3□□□□□ -1.56
VPS35-205ENST00000563984 UNKLQ9H9P5 680 aaKnown RBP5.3□□□□□ -1.56
VPS35-205ENST00000563984 PDE11AQ9HCR9 933 aa5.3□□□□□ -1.56
VPS35-205ENST00000563984 C8orf4Q9NR00 106 aa5.3□□□□□ -1.56
VPS35-205ENST00000563984 POLE3Q9NRF9 147 aa5.3□□□□□ -1.56
VPS35-205ENST00000563984 SDAD1Q9NVU7 687 aaKnown RBP eCLIP5.3□□□□□ -1.56
VPS35-205ENST00000563984 NMRK1Q9NWW6 199 aa5.3□□□□□ -1.56
VPS35-205ENST00000563984 HSFX1Q9UBD0 423 aa5.3□□□□□ -1.56
VPS35-205ENST00000563984 SRP68Q9UHB9 627 aaKnown RBP5.3□□□□□ -1.56
VPS35-205ENST00000563984 ZNHIT2Q9UHR6 403 aa5.3□□□□□ -1.56
VPS35-205ENST00000563984 SERPINB13Q9UIV8 391 aa5.3□□□□□ -1.56
VPS35-205ENST00000563984 R3HDM2Q9Y2K5 976 aaKnown RBP5.3□□□□□ -1.56
VPS35-205ENST00000563984 NEU2Q9Y3R4 380 aa5.3□□□□□ -1.56
VPS35-205ENST00000563984 SCAPERQ9BY12 1400 aa5.3□□□□□ -1.56
VPS35-205ENST00000563984 SH3TC1Q8TE82 1336 aa5.29□□□□□ -1.56
VPS35-205ENST00000563984 COL11A2P13942 1736 aaPredicted RBP5.29□□□□□ -1.56
VPS35-205ENST00000563984 WDR91A4D1P6 747 aa5.29□□□□□ -1.56
VPS35-205ENST00000563984 CTAGE15A4D2H0 777 aa5.29□□□□□ -1.56
VPS35-205ENST00000563984 ZAR1LA6NP61 321 aa5.29□□□□□ -1.56
VPS35-205ENST00000563984 B4E171 279 aa5.29□□□□□ -1.56
VPS35-205ENST00000563984 KPNA5O15131 536 aa5.29□□□□□ -1.56
VPS35-205ENST00000563984 TSPAN9O75954 239 aa5.29□□□□□ -1.56
VPS35-205ENST00000563984 AGFG2O95081 481 aa5.29□□□□□ -1.56
VPS35-205ENST00000563984 HLA-DRAP01903 254 aa5.29□□□□□ -1.56
VPS35-205ENST00000563984 CD1AP06126 327 aa5.29□□□□□ -1.56
VPS35-205ENST00000563984 SBK3P0C264 359 aa5.29□□□□□ -1.56
VPS35-205ENST00000563984 CTAGE8P0CG41 777 aa5.29□□□□□ -1.56
VPS35-205ENST00000563984 SRGAP2BP0DMP2 458 aa5.29□□□□□ -1.56
VPS35-205ENST00000563984 FCER1AP12319 257 aa5.29□□□□□ -1.56
VPS35-205ENST00000563984 PRKACBP22694 351 aa5.29□□□□□ -1.56
VPS35-205ENST00000563984 GPTP24298 496 aa5.29□□□□□ -1.56
VPS35-205ENST00000563984 SLC6A4P31645 630 aa5.29□□□□□ -1.56
VPS35-205ENST00000563984 PPARGP37231 505 aaPredicted RBP5.29□□□□□ -1.56
VPS35-205ENST00000563984 MPLP40238 635 aa5.29□□□□□ -1.56
VPS35-205ENST00000563984 SERPINB8P50452 374 aa5.29□□□□□ -1.56
VPS35-205ENST00000563984 THOP1P52888 689 aa5.29□□□□□ -1.56
VPS35-205ENST00000563984 EXOSC9Q06265 439 aaKnown RBP5.29□□□□□ -1.56
VPS35-205ENST00000563984 BYSLQ13895 437 aaKnown RBP5.29□□□□□ -1.56
VPS35-205ENST00000563984 LRIT3Q3SXY7 679 aa5.29□□□□□ -1.56
VPS35-205ENST00000563984 PRR16Q569H4 304 aa5.29□□□□□ -1.56
VPS35-205ENST00000563984 IGSF11Q5DX21 431 aa5.29□□□□□ -1.56
VPS35-205ENST00000563984 XKR3Q5GH77 459 aa5.29□□□□□ -1.56
VPS35-205ENST00000563984 CEP85LQ5SZL2 805 aa5.29□□□□□ -1.56
VPS35-205ENST00000563984 FAM205BPQ63HN1 556 aa5.29□□□□□ -1.56
VPS35-205ENST00000563984 SP5Q6BEB4 398 aaPredicted RBP5.29□□□□□ -1.56
VPS35-205ENST00000563984 PM20D1Q6GTS8 502 aa5.29□□□□□ -1.56
VPS35-205ENST00000563984 C15orf52Q6ZUT6 534 aaKnown RBP5.29□□□□□ -1.56
VPS35-205ENST00000563984 TADA2BQ86TJ2 420 aa5.29□□□□□ -1.56
VPS35-205ENST00000563984 CTAGE6Q86UF2 777 aa5.29□□□□□ -1.56
VPS35-205ENST00000563984 STX12Q86Y82 276 aa5.29□□□□□ -1.56
VPS35-205ENST00000563984 CTAGE4Q8IX94 777 aa5.29□□□□□ -1.56
VPS35-205ENST00000563984 MYCT1Q8N699 235 aa5.29□□□□□ -1.56
VPS35-205ENST00000563984 AOPEPQ8N6M6 819 aa5.29□□□□□ -1.56
VPS35-205ENST00000563984 Q8NA96 180 aa5.29□□□□□ -1.56
VPS35-205ENST00000563984 OR56B2PQ8NGI1 322 aa5.29□□□□□ -1.56
VPS35-205ENST00000563984 MOSPD2Q8NHP6 518 aa5.29□□□□□ -1.56
VPS35-205ENST00000563984 ENKURQ8TC29 256 aa5.29□□□□□ -1.56
VPS35-205ENST00000563984 PEX13Q92968 403 aa5.29□□□□□ -1.56
VPS35-205ENST00000563984 KAT5Q92993 513 aa5.29□□□□□ -1.56
Retrieved 100 of 20,778 RNA–protein pairs in 19.6 ms