RNA–Protein interactions for RNA: ENST00000537004.5

CLIP1-208, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

TSL 1 (best)

Gene CLIP1, Length 2,000 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-208ENST00000537004 SLC9A4Q6AI14 798 aa12.25□□□□□ -0.45
CLIP1-208ENST00000537004 DARS2Q6PI48 645 aaKnown RBP12.25□□□□□ -0.45
CLIP1-208ENST00000537004 ASCL5Q7RTU5 278 aa12.25□□□□□ -0.45
CLIP1-208ENST00000537004 PCGF5Q86SE9 256 aa12.25□□□□□ -0.45
CLIP1-208ENST00000537004 C12orf40Q86WS4 652 aa12.25□□□□□ -0.45
CLIP1-208ENST00000537004 CCDC185Q8N715 623 aa12.25□□□□□ -0.45
CLIP1-208ENST00000537004 PRCCQ92733 491 aaPredicted RBP12.25□□□□□ -0.45
CLIP1-208ENST00000537004 FAF2Q96CS3 445 aa12.25□□□□□ -0.45
CLIP1-208ENST00000537004 IRF2BPLQ9H1B7 796 aa12.25□□□□□ -0.45
CLIP1-208ENST00000537004 DHX35Q9H5Z1 703 aaKnown RBP12.25□□□□□ -0.45
CLIP1-208ENST00000537004 SH3BP1Q9Y3L3 701 aa12.25□□□□□ -0.45
CLIP1-208ENST00000537004 KIF26AQ9ULI4 1882 aaPredicted RBP12.25□□□□□ -0.45
CLIP1-208ENST00000537004 ATG2BQ96BY7 2078 aa12.24□□□□□ -0.45
CLIP1-208ENST00000537004 E2F8A0AVK6 867 aa12.24□□□□□ -0.45
CLIP1-208ENST00000537004 YJEFN3A6XGL0 299 aa12.24□□□□□ -0.45
CLIP1-208ENST00000537004 VGLL3A8MV65 326 aa12.24□□□□□ -0.45
CLIP1-208ENST00000537004 E7ENQ6 273 aa12.24□□□□□ -0.45
CLIP1-208ENST00000537004 RGS16O15492 202 aaPredicted RBP12.24□□□□□ -0.45
CLIP1-208ENST00000537004 FBXO21O94952 628 aa12.24□□□□□ -0.45
CLIP1-208ENST00000537004 HMBSP08397 361 aa12.24□□□□□ -0.45
CLIP1-208ENST00000537004 NOS2P35228 1153 aa12.24□□□□□ -0.45
CLIP1-208ENST00000537004 RPL22P35268 128 aaKnown RBP12.24□□□□□ -0.45
CLIP1-208ENST00000537004 OPRD1P41143 372 aa12.24□□□□□ -0.45
CLIP1-208ENST00000537004 MAGEA4P43358 317 aa12.24□□□□□ -0.45
CLIP1-208ENST00000537004 SLCO1A2P46721 670 aa12.24□□□□□ -0.45
CLIP1-208ENST00000537004 PPP2R2AP63151 447 aa12.24□□□□□ -0.45
CLIP1-208ENST00000537004 GUCY1A3Q02108 690 aa12.24□□□□□ -0.45
CLIP1-208ENST00000537004 EFEMP1Q12805 493 aa12.24□□□□□ -0.45
CLIP1-208ENST00000537004 GRSF1Q12849 480 aaKnown RBP eCLIP12.24□□□□□ -0.45
CLIP1-208ENST00000537004 TMEM25Q86YD3 366 aa12.24□□□□□ -0.45
CLIP1-208ENST00000537004 EDEM1Q92611 657 aa12.24□□□□□ -0.45
CLIP1-208ENST00000537004 C9orf72Q96LT7 481 aa12.24□□□□□ -0.45
CLIP1-208ENST00000537004 ROPN1BQ9BZX4 212 aaPredicted RBP12.24□□□□□ -0.45
CLIP1-208ENST00000537004 ROPN1Q9HAT0 212 aaPredicted RBP12.24□□□□□ -0.45
CLIP1-208ENST00000537004 SAYSD1Q9NPB0 183 aa12.24□□□□□ -0.45
CLIP1-208ENST00000537004 DNMT3LQ9UJW3 386 aa12.24□□□□□ -0.45
CLIP1-208ENST00000537004 FARP1Q9Y4F1 1045 aaPredicted RBP12.24□□□□□ -0.45
CLIP1-208ENST00000537004 HEY1Q9Y5J3 304 aa12.24□□□□□ -0.45
CLIP1-208ENST00000537004 H7C0C1 242 aa12.23□□□□□ -0.45
CLIP1-208ENST00000537004 TRIM24O15164 1050 aa12.23□□□□□ -0.45
CLIP1-208ENST00000537004 EIF3HO15372 352 aaKnown RBP eCLIP12.23□□□□□ -0.45
CLIP1-208ENST00000537004 STIP1P31948 543 aaKnown RBP12.23□□□□□ -0.45
CLIP1-208ENST00000537004 RDXP35241 583 aaKnown RBP12.23□□□□□ -0.45
CLIP1-208ENST00000537004 MAGEA9P43362 315 aa12.23□□□□□ -0.45
CLIP1-208ENST00000537004 ATP5OP48047 213 aa12.23□□□□□ -0.45
CLIP1-208ENST00000537004 YWHAGP61981 247 aaKnown RBP eCLIP12.23□□□□□ -0.45
CLIP1-208ENST00000537004 PITX1P78337 314 aaPredicted RBP12.23□□□□□ -0.45
CLIP1-208ENST00000537004 DMWDQ09019 674 aa12.23□□□□□ -0.45
CLIP1-208ENST00000537004 LRRC32Q14392 662 aa12.23□□□□□ -0.45
CLIP1-208ENST00000537004 LONRF1Q17RB8 773 aa12.23□□□□□ -0.45
CLIP1-208ENST00000537004 OTUD1Q5VV17 481 aaPredicted RBP12.23□□□□□ -0.45
CLIP1-208ENST00000537004 PM20D1Q6GTS8 502 aa12.23□□□□□ -0.45
CLIP1-208ENST00000537004 LRRC31Q6UY01 552 aa12.23□□□□□ -0.45
CLIP1-208ENST00000537004 B4GALNT4Q76KP1 1039 aa12.23□□□□□ -0.45
CLIP1-208ENST00000537004 FAM131BQ86XD5 332 aa12.23□□□□□ -0.45
CLIP1-208ENST00000537004 PPIL6Q8IXY8 311 aa12.23□□□□□ -0.45
CLIP1-208ENST00000537004 NAT16Q8N8M0 369 aa12.23□□□□□ -0.45
CLIP1-208ENST00000537004 BHMTQ93088 406 aa12.23□□□□□ -0.45
CLIP1-208ENST00000537004 NT5C3BQ969T7 300 aa12.23□□□□□ -0.45
CLIP1-208ENST00000537004 P2RY11Q96G91 374 aa12.23□□□□□ -0.45
CLIP1-208ENST00000537004 SLC2A13Q96QE2 648 aa12.23□□□□□ -0.45
CLIP1-208ENST00000537004 KCTD15Q96SI1 283 aaPredicted RBP12.23□□□□□ -0.45
CLIP1-208ENST00000537004 NPY6RQ99463 290 aa12.23□□□□□ -0.45
CLIP1-208ENST00000537004 MAGEB5Q9BZ81 275 aa12.23□□□□□ -0.45
CLIP1-208ENST00000537004 POPDC2Q9HBU9 364 aa12.23□□□□□ -0.45
CLIP1-208ENST00000537004 PRMT8Q9NR22 394 aaPredicted RBP12.23□□□□□ -0.45
CLIP1-208ENST00000537004 STAP1Q9ULZ2 295 aa12.23□□□□□ -0.45
CLIP1-208ENST00000537004 GFRA3O60609 400 aa12.23□□□□□ -0.45
CLIP1-208ENST00000537004 AGTP01019 485 aa12.23□□□□□ -0.45
CLIP1-208ENST00000537004 KLKB1P03952 638 aa12.23□□□□□ -0.45
CLIP1-208ENST00000537004 MDH1P40925 334 aaKnown RBP12.23□□□□□ -0.45
CLIP1-208ENST00000537004 CXCL12P48061 93 aa12.23□□□□□ -0.45
CLIP1-208ENST00000537004 HNRNPH2P55795 449 aaKnown RBP12.23□□□□□ -0.45
CLIP1-208ENST00000537004 NR1H3Q13133 447 aa12.23□□□□□ -0.45
CLIP1-208ENST00000537004 AUHQ13825 339 aaKnown RBP12.23□□□□□ -0.45
CLIP1-208ENST00000537004 ZSCAN26Q16670 478 aa12.23□□□□□ -0.45
CLIP1-208ENST00000537004 DGKKQ5KSL6 1271 aa12.23□□□□□ -0.45
CLIP1-208ENST00000537004 SYPL2Q5VXT5 272 aa12.23□□□□□ -0.45
CLIP1-208ENST00000537004 BNIPLQ7Z465 357 aa12.23□□□□□ -0.45
CLIP1-208ENST00000537004 SPEM1Q8N4L4 309 aa12.23□□□□□ -0.45
CLIP1-208ENST00000537004 TAB3Q8N5C8 712 aaPredicted RBP12.23□□□□□ -0.45
CLIP1-208ENST00000537004 CPT1BQ92523 772 aa12.23□□□□□ -0.45
CLIP1-208ENST00000537004 STMN4Q9H169 189 aaPredicted RBP12.23□□□□□ -0.45
CLIP1-208ENST00000537004 ZDHHC4Q9NPG8 344 aa12.23□□□□□ -0.45
CLIP1-208ENST00000537004 CNGB3Q9NQW8 809 aa12.23□□□□□ -0.45
CLIP1-208ENST00000537004 CLIC5Q9NZA1 410 aa12.23□□□□□ -0.45
CLIP1-208ENST00000537004 SLC12A6Q9UHW9 1150 aa12.23□□□□□ -0.45
CLIP1-208ENST00000537004 FBXO4Q9UKT5 387 aa12.23□□□□□ -0.45
CLIP1-208ENST00000537004 MYOFQ9NZM1 2061 aa12.22□□□□□ -0.45
CLIP1-208ENST00000537004 M0QYT0 321 aa12.22□□□□□ -0.45
CLIP1-208ENST00000537004 SLC9A3R1O14745 358 aaPredicted RBP12.22□□□□□ -0.45
CLIP1-208ENST00000537004 STC2O76061 302 aa12.22□□□□□ -0.45
CLIP1-208ENST00000537004 ADH5P11766 374 aa12.22□□□□□ -0.45
CLIP1-208ENST00000537004 TDGF1P13385 188 aa12.22□□□□□ -0.45
CLIP1-208ENST00000537004 PXNP49023 591 aaPredicted RBP12.22□□□□□ -0.45
CLIP1-208ENST00000537004 PSEN1P49768 467 aa12.22□□□□□ -0.45
CLIP1-208ENST00000537004 NRLP54845 237 aa12.22□□□□□ -0.45
CLIP1-208ENST00000537004 SEC13P55735 322 aa12.22□□□□□ -0.45
CLIP1-208ENST00000537004 DAOAP59103 153 aa12.22□□□□□ -0.45
CLIP1-208ENST00000537004 IFI35P80217 286 aaPredicted RBP12.22□□□□□ -0.45
Retrieved 100 of 20,778 RNA–protein pairs in 24.4 ms