RNA–Protein interactions for RNA: ENST00000411423.1

SF3A1-202, Transcript of splicing factor 3a subunit 1, humanhuman

TSL 4

Gene SF3A1, Length 548 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3A1-202ENST00000411423 CSNK1EP49674 416 aaKnown RBP19.5■□□□□ 0.71
SF3A1-202ENST00000411423 NOVA1P51513 510 aaKnown RBP19.5■□□□□ 0.71
SF3A1-202ENST00000411423 UBASH3AP57075 661 aa19.5■□□□□ 0.71
SF3A1-202ENST00000411423 PPP2CBP62714 309 aa19.5■□□□□ 0.71
SF3A1-202ENST00000411423 PPP2CAP67775 309 aa19.5■□□□□ 0.71
SF3A1-202ENST00000411423 KRT83P78385 493 aa19.5■□□□□ 0.71
SF3A1-202ENST00000411423 KLHL30Q0D2K2 578 aa19.5■□□□□ 0.71
SF3A1-202ENST00000411423 ARL13BQ3SXY8 428 aa19.5■□□□□ 0.71
SF3A1-202ENST00000411423 RWDD4Q6NW29 188 aaKnown RBP19.5■□□□□ 0.71
SF3A1-202ENST00000411423 SCYL2Q6P3W7 929 aa19.5■□□□□ 0.71
SF3A1-202ENST00000411423 SLFN11Q7Z7L1 901 aa19.5■□□□□ 0.71
SF3A1-202ENST00000411423 PIP4P1Q86T03 277 aa19.5■□□□□ 0.71
SF3A1-202ENST00000411423 PIP4K2CQ8TBX8 421 aa19.5■□□□□ 0.71
SF3A1-202ENST00000411423 OR8D1Q8WZ84 308 aa19.5■□□□□ 0.71
SF3A1-202ENST00000411423 VCPIP1Q96JH7 1222 aa19.5■□□□□ 0.71
SF3A1-202ENST00000411423 ACE2Q9BYF1 805 aaPredicted RBP19.5■□□□□ 0.71
SF3A1-202ENST00000411423 EDEM3Q9BZQ6 932 aa19.5■□□□□ 0.71
SF3A1-202ENST00000411423 NOL6Q9H6R4 1146 aaKnown RBP19.5■□□□□ 0.71
SF3A1-202ENST00000411423 DNAAF2Q9NVR5 837 aaKnown RBP19.5■□□□□ 0.71
SF3A1-202ENST00000411423 TMEM248Q9NWD8 314 aa19.5■□□□□ 0.71
SF3A1-202ENST00000411423 IFNKQ9P0W0 207 aa19.5■□□□□ 0.71
SF3A1-202ENST00000411423 CBX4O00257 560 aa19.49■□□□□ 0.71
SF3A1-202ENST00000411423 RTN2O75298 545 aa19.49■□□□□ 0.71
SF3A1-202ENST00000411423 FTLP02792 175 aaPredicted RBP19.49■□□□□ 0.71
SF3A1-202ENST00000411423 RHOQP17081 205 aa19.49■□□□□ 0.71
SF3A1-202ENST00000411423 ATXN3P54252 364 aaPredicted RBP19.49■□□□□ 0.71
SF3A1-202ENST00000411423 AGBL4Q5VU57 503 aa19.49■□□□□ 0.71
SF3A1-202ENST00000411423 C22orf39Q6P5X5 142 aa19.49■□□□□ 0.71
SF3A1-202ENST00000411423 RAB11FIP1Q6WKZ4 1283 aaPredicted RBP19.49■□□□□ 0.71
SF3A1-202ENST00000411423 ZNF783Q6ZMS7 281 aa19.49■□□□□ 0.71
SF3A1-202ENST00000411423 ARHGEF2Q92974 986 aaKnown RBP19.49■□□□□ 0.71
SF3A1-202ENST00000411423 VOPP1Q96AW1 172 aa19.49■□□□□ 0.71
SF3A1-202ENST00000411423 ARRDC3Q96B67 414 aa19.49■□□□□ 0.71
SF3A1-202ENST00000411423 TBC1D31Q96DN5 1066 aa19.49■□□□□ 0.71
SF3A1-202ENST00000411423 PEBP4Q96S96 227 aa19.49■□□□□ 0.71
SF3A1-202ENST00000411423 CNPY3Q9BT09 278 aa19.49■□□□□ 0.71
SF3A1-202ENST00000411423 ATP13A1Q9HD20 1204 aa19.49■□□□□ 0.71
SF3A1-202ENST00000411423 GPATCH2LQ9NWQ4 482 aa19.49■□□□□ 0.71
SF3A1-202ENST00000411423 CACNA1EQ15878 2313 aa19.48■□□□□ 0.71
SF3A1-202ENST00000411423 SYPP08247 313 aa19.48■□□□□ 0.71
SF3A1-202ENST00000411423 CSRP1P21291 193 aaKnown RBP19.48■□□□□ 0.71
SF3A1-202ENST00000411423 CD27P26842 260 aa19.48■□□□□ 0.71
SF3A1-202ENST00000411423 TAS2R38P59533 333 aa19.48■□□□□ 0.71
SF3A1-202ENST00000411423 FAM193AP78312 1265 aa19.48■□□□□ 0.71
SF3A1-202ENST00000411423 CNTN1Q12860 1018 aa19.48■□□□□ 0.71
SF3A1-202ENST00000411423 CA9Q16790 459 aa19.48■□□□□ 0.71
SF3A1-202ENST00000411423 DCUN1D2Q6PH85 259 aa19.48■□□□□ 0.71
SF3A1-202ENST00000411423 LEKR1Q6ZMV7 388 aa19.48■□□□□ 0.71
SF3A1-202ENST00000411423 CYP4V2Q6ZWL3 525 aaPredicted RBP19.48■□□□□ 0.71
SF3A1-202ENST00000411423 TMC6Q7Z403 805 aa19.48■□□□□ 0.71
SF3A1-202ENST00000411423 OR2T34Q8NGX1 318 aa19.48■□□□□ 0.71
SF3A1-202ENST00000411423 OR14C36Q8NHC7 312 aa19.48■□□□□ 0.71
SF3A1-202ENST00000411423 CPLX3Q8WVH0 158 aa19.48■□□□□ 0.71
SF3A1-202ENST00000411423 SLC6A18Q96N87 628 aa19.48■□□□□ 0.71
SF3A1-202ENST00000411423 CAMK1GQ96NX5 476 aa19.48■□□□□ 0.71
SF3A1-202ENST00000411423 KLC2Q9H0B6 622 aa19.48■□□□□ 0.71
SF3A1-202ENST00000411423 FCF1Q9Y324 198 aaKnown RBP19.48■□□□□ 0.71
SF3A1-202ENST00000411423 SPEGQ15772 3267 aa19.48■□□□□ 0.71
SF3A1-202ENST00000411423 CNOT1A5YKK6 2376 aaKnown RBP19.47■□□□□ 0.71
SF3A1-202ENST00000411423 A0A1W2PPC4 97 aa19.47■□□□□ 0.71
SF3A1-202ENST00000411423 A0A1W2PQJ5 194 aa19.47■□□□□ 0.71
SF3A1-202ENST00000411423 TMEM191CA6NGB0 347 aa19.47■□□□□ 0.71
SF3A1-202ENST00000411423 KCNK3O14649 394 aa19.47■□□□□ 0.71
SF3A1-202ENST00000411423 ALOX15BO15296 676 aa19.47■□□□□ 0.71
SF3A1-202ENST00000411423 OPHN1O60890 802 aa19.47■□□□□ 0.71
SF3A1-202ENST00000411423 WNT1P04628 370 aa19.47■□□□□ 0.71
SF3A1-202ENST00000411423 GYPCP04921 128 aa19.47■□□□□ 0.71
SF3A1-202ENST00000411423 GZMAP12544 262 aa19.47■□□□□ 0.71
SF3A1-202ENST00000411423 PMLP29590 882 aa19.47■□□□□ 0.71
SF3A1-202ENST00000411423 L1CAMP32004 1257 aa19.47■□□□□ 0.71
SF3A1-202ENST00000411423 CHRNA3P32297 505 aa19.47■□□□□ 0.71
SF3A1-202ENST00000411423 MAPKAPK2P49137 400 aa19.47■□□□□ 0.71
SF3A1-202ENST00000411423 SERPINH1P50454 418 aaKnown RBP19.47■□□□□ 0.71
SF3A1-202ENST00000411423 KIF19Q2TAC6 998 aa19.47■□□□□ 0.71
SF3A1-202ENST00000411423 DPY19L3Q6ZPD9 716 aa19.47■□□□□ 0.71
SF3A1-202ENST00000411423 OSGEPQ9NPF4 335 aa19.47■□□□□ 0.71
SF3A1-202ENST00000411423 PARVAQ9NVD7 372 aa19.47■□□□□ 0.71
SF3A1-202ENST00000411423 CNOT8Q9UFF9 292 aaKnown RBP19.47■□□□□ 0.71
SF3A1-202ENST00000411423 FNDC3AQ9Y2H6 1198 aaKnown RBP19.47■□□□□ 0.71
SF3A1-202ENST00000411423 SNX11Q9Y5W9 270 aa19.47■□□□□ 0.71
SF3A1-202ENST00000411423 TMEM131Q92545 1883 aa19.46■□□□□ 0.71
SF3A1-202ENST00000411423 UPK3BL1B0FP48 263 aa19.46■□□□□ 0.71
SF3A1-202ENST00000411423 UPK3BL2E5RIL1 263 aa19.46■□□□□ 0.71
SF3A1-202ENST00000411423 GOLGA6L19H0YKK7 550 aa19.46■□□□□ 0.71
SF3A1-202ENST00000411423 PLRG1O43660 514 aaKnown RBP19.46■□□□□ 0.71
SF3A1-202ENST00000411423 PTMSP20962 102 aa19.46■□□□□ 0.71
SF3A1-202ENST00000411423 PSMA2P25787 234 aa19.46■□□□□ 0.71
SF3A1-202ENST00000411423 CLCN6P51797 869 aa19.46■□□□□ 0.71
SF3A1-202ENST00000411423 TPM4P67936 248 aa19.46■□□□□ 0.71
SF3A1-202ENST00000411423 HLA-BQ31612 363 aa19.46■□□□□ 0.71
SF3A1-202ENST00000411423 EFHC2Q5JST6 749 aa19.46■□□□□ 0.71
SF3A1-202ENST00000411423 PIP5KL1Q5T9C9 394 aa19.46■□□□□ 0.71
SF3A1-202ENST00000411423 NETO2Q8NC67 525 aa19.46■□□□□ 0.71
SF3A1-202ENST00000411423 ZNF653Q96CK0 615 aa19.46■□□□□ 0.71
SF3A1-202ENST00000411423 XPO4Q9C0E2 1151 aaKnown RBP19.46■□□□□ 0.71
SF3A1-202ENST00000411423 ISCUQ9H1K1 167 aa19.46■□□□□ 0.71
SF3A1-202ENST00000411423 GAREM1Q9H706 876 aa19.46■□□□□ 0.71
SF3A1-202ENST00000411423 ARHGAP20Q9P2F6 1191 aa19.46■□□□□ 0.71
SF3A1-202ENST00000411423 CAPN11Q9UMQ6 739 aa19.46■□□□□ 0.71
SF3A1-202ENST00000411423 WASF2Q9Y6W5 498 aa19.46■□□□□ 0.71
Retrieved 100 of 20,778 RNA–protein pairs in 21.2 ms