RNA–Protein interactions for RNA: ENST00000389040.9

VPS53-202, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 1 (best)

Gene VPS53, Length 1,903 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-202ENST00000389040 PECAM1P16284 738 aaPredicted RBP10.44□□□□□ -0.74
VPS53-202ENST00000389040 DRD1P21728 446 aa10.44□□□□□ -0.74
VPS53-202ENST00000389040 CTHP32929 405 aa10.44□□□□□ -0.74
VPS53-202ENST00000389040 GJA4P35212 333 aa10.44□□□□□ -0.74
VPS53-202ENST00000389040 MAGEA9P43362 315 aa10.44□□□□□ -0.74
VPS53-202ENST00000389040 SEC24CP53992 1094 aa10.44□□□□□ -0.74
VPS53-202ENST00000389040 GDF10P55107 478 aa10.44□□□□□ -0.74
VPS53-202ENST00000389040 EIF3EP60228 445 aaKnown RBP10.44□□□□□ -0.74
VPS53-202ENST00000389040 PITX1P78337 314 aaPredicted RBP10.44□□□□□ -0.74
VPS53-202ENST00000389040 KRT81Q14533 505 aa10.44□□□□□ -0.74
VPS53-202ENST00000389040 FBXO43Q4G163 708 aa10.44□□□□□ -0.74
VPS53-202ENST00000389040 FAM133BQ5BKY9 247 aaKnown RBP10.44□□□□□ -0.74
VPS53-202ENST00000389040 MS4A13Q5J8X5 152 aa10.44□□□□□ -0.74
VPS53-202ENST00000389040 TAOK1Q7L7X3 1001 aa10.44□□□□□ -0.74
VPS53-202ENST00000389040 PCGF5Q86SE9 256 aa10.44□□□□□ -0.74
VPS53-202ENST00000389040 CCDC117Q8IWD4 279 aaPredicted RBP10.44□□□□□ -0.74
VPS53-202ENST00000389040 HJURPQ8NCD3 748 aaPredicted RBP10.44□□□□□ -0.74
VPS53-202ENST00000389040 TEKT4Q8WW24 435 aa10.44□□□□□ -0.74
VPS53-202ENST00000389040 CENPTQ96BT3 561 aa10.44□□□□□ -0.74
VPS53-202ENST00000389040 ZFYVE19Q96K21 471 aa10.44□□□□□ -0.74
VPS53-202ENST00000389040 C9orf72Q96LT7 481 aa10.44□□□□□ -0.74
VPS53-202ENST00000389040 CCT8L2Q96SF2 557 aa10.44□□□□□ -0.74
VPS53-202ENST00000389040 SELENOSQ9BQE4 189 aa10.44□□□□□ -0.74
VPS53-202ENST00000389040 IER2Q9BTL4 223 aa10.44□□□□□ -0.74
VPS53-202ENST00000389040 SAYSD1Q9NPB0 183 aa10.44□□□□□ -0.74
VPS53-202ENST00000389040 GTSE1Q9NYZ3 720 aa10.44□□□□□ -0.74
VPS53-202ENST00000389040 PPARGC1AQ9UBK2 798 aaKnown RBP10.44□□□□□ -0.74
VPS53-202ENST00000389040 FBXO10Q9UK96 956 aa10.44□□□□□ -0.74
VPS53-202ENST00000389040 FARP1Q9Y4F1 1045 aaPredicted RBP10.44□□□□□ -0.74
VPS53-202ENST00000389040 DENND4CQ5VZ89 1909 aa10.44□□□□□ -0.74
VPS53-202ENST00000389040 ANAPC1Q9H1A4 1944 aa10.44□□□□□ -0.74
VPS53-202ENST00000389040 IGLV3-10A0A075B6K4 115 aa10.43□□□□□ -0.74
VPS53-202ENST00000389040 GMNCA6NCL1 334 aa10.43□□□□□ -0.74
VPS53-202ENST00000389040 TIMM44O43615 452 aa10.43□□□□□ -0.74
VPS53-202ENST00000389040 PAGE1O75459 146 aa10.43□□□□□ -0.74
VPS53-202ENST00000389040 ARSAP15289 507 aa10.43□□□□□ -0.74
VPS53-202ENST00000389040 CHN1P15882 459 aa10.43□□□□□ -0.74
VPS53-202ENST00000389040 ATP5DP30049 168 aa10.43□□□□□ -0.74
VPS53-202ENST00000389040 TNK2Q07912 1038 aa10.43□□□□□ -0.74
VPS53-202ENST00000389040 MMRN1Q13201 1228 aa10.43□□□□□ -0.74
VPS53-202ENST00000389040 TFDP2Q14188 446 aa10.43□□□□□ -0.74
VPS53-202ENST00000389040 PDK2Q15119 407 aa10.43□□□□□ -0.74
VPS53-202ENST00000389040 ANO4Q32M45 955 aa10.43□□□□□ -0.74
VPS53-202ENST00000389040 FYB2Q5VWT5 728 aa10.43□□□□□ -0.74
VPS53-202ENST00000389040 TRIM68Q6AZZ1 485 aa10.43□□□□□ -0.74
VPS53-202ENST00000389040 SCYL2Q6P3W7 929 aa10.43□□□□□ -0.74
VPS53-202ENST00000389040 TMEM25Q86YD3 366 aa10.43□□□□□ -0.74
VPS53-202ENST00000389040 MAP7D3Q8IWC1 876 aa10.43□□□□□ -0.74
VPS53-202ENST00000389040 TTC16Q8NEE8 873 aa10.43□□□□□ -0.74
VPS53-202ENST00000389040 MDM1Q8TC05 714 aa10.43□□□□□ -0.74
VPS53-202ENST00000389040 ZNF473Q8WTR7 871 aaKnown RBP10.43□□□□□ -0.74
VPS53-202ENST00000389040 DDI1Q8WTU0 396 aa10.43□□□□□ -0.74
VPS53-202ENST00000389040 FAM3CQ92520 227 aa10.43□□□□□ -0.74
VPS53-202ENST00000389040 PRCCQ92733 491 aaPredicted RBP10.43□□□□□ -0.74
VPS53-202ENST00000389040 WBP2Q969T9 261 aa10.43□□□□□ -0.74
VPS53-202ENST00000389040 TTC25Q96NG3 672 aa10.43□□□□□ -0.74
VPS53-202ENST00000389040 PRMT1Q99873 361 aaKnown RBP10.43□□□□□ -0.74
VPS53-202ENST00000389040 BBS2Q9BXC9 721 aa10.43□□□□□ -0.74
VPS53-202ENST00000389040 C10orf88Q9H8K7 445 aa10.43□□□□□ -0.74
VPS53-202ENST00000389040 HEBP1Q9NRV9 189 aa10.43□□□□□ -0.74
VPS53-202ENST00000389040 SLC27A6Q9Y2P4 619 aa10.43□□□□□ -0.74
VPS53-202ENST00000389040 OBSL1O75147 1896 aa10.43□□□□□ -0.74
VPS53-202ENST00000389040 VCANP13611 3396 aa10.43□□□□□ -0.74
VPS53-202ENST00000389040 SYNJ2BP-COX16A0A087WUM0 186 aa10.43□□□□□ -0.74
VPS53-202ENST00000389040 KANSL1LA0AUZ9 987 aa10.43□□□□□ -0.74
VPS53-202ENST00000389040 DRGXA6NNA5 263 aa10.43□□□□□ -0.74
VPS53-202ENST00000389040 TYRP14679 529 aa10.43□□□□□ -0.74
VPS53-202ENST00000389040 TFE3P19532 575 aaPredicted RBP10.43□□□□□ -0.74
VPS53-202ENST00000389040 L1CAMP32004 1257 aa10.43□□□□□ -0.74
VPS53-202ENST00000389040 CLCN5P51795 746 aa10.43□□□□□ -0.74
VPS53-202ENST00000389040 GRSF1Q12849 480 aaKnown RBP eCLIP10.43□□□□□ -0.744e-9■■■■■ 30.8
VPS53-202ENST00000389040 SLC12A1Q13621 1099 aa10.43□□□□□ -0.74
VPS53-202ENST00000389040 STAT4Q14765 748 aa10.43□□□□□ -0.74
VPS53-202ENST00000389040 EFHC2Q5JST6 749 aa10.43□□□□□ -0.74
VPS53-202ENST00000389040 DGKKQ5KSL6 1271 aa10.43□□□□□ -0.74
VPS53-202ENST00000389040 ERMARDQ5T6L9 678 aa10.43□□□□□ -0.74
VPS53-202ENST00000389040 CENPUQ71F23 418 aa10.43□□□□□ -0.74
VPS53-202ENST00000389040 CHST9Q7L1S5 443 aa10.43□□□□□ -0.74
VPS53-202ENST00000389040 SRLQ86TD4 932 aa10.43□□□□□ -0.74
VPS53-202ENST00000389040 FAM131BQ86XD5 332 aa10.43□□□□□ -0.74
VPS53-202ENST00000389040 ETFBKMTQ8IXQ9 262 aa10.43□□□□□ -0.74
VPS53-202ENST00000389040 FAM71DQ8N9W8 422 aa10.43□□□□□ -0.74
VPS53-202ENST00000389040 TRAF3IP1Q8TDR0 691 aaPredicted RBP10.43□□□□□ -0.74
VPS53-202ENST00000389040 RNF157Q96PX1 679 aa10.43□□□□□ -0.74
VPS53-202ENST00000389040 P2RY13Q9BPV8 354 aa10.43□□□□□ -0.74
VPS53-202ENST00000389040 CCDC77Q9BR77 488 aa10.43□□□□□ -0.74
VPS53-202ENST00000389040 C1QTNF1Q9BXJ1 281 aa10.43□□□□□ -0.74
VPS53-202ENST00000389040 ADAM33Q9BZ11 813 aa10.43□□□□□ -0.74
VPS53-202ENST00000389040 COX16Q9P0S2 106 aa10.43□□□□□ -0.74
VPS53-202ENST00000389040 DEC1Q9P2X7 70 aa10.43□□□□□ -0.74
VPS53-202ENST00000389040 OR12D3Q9UGF7 316 aa10.43□□□□□ -0.74
VPS53-202ENST00000389040 HS3ST4Q9Y661 456 aa10.43□□□□□ -0.74
VPS53-202ENST00000389040 A0A087WUV0 522 aaPredicted RBP10.42□□□□□ -0.74
VPS53-202ENST00000389040 CXorf51AA0A1B0GTR3 108 aa10.42□□□□□ -0.74
VPS53-202ENST00000389040 OTOL1A6NHN0 477 aaPredicted RBP10.42□□□□□ -0.74
VPS53-202ENST00000389040 NPC1O15118 1278 aa10.42□□□□□ -0.74
VPS53-202ENST00000389040 CLDN11O75508 207 aa10.42□□□□□ -0.74
VPS53-202ENST00000389040 RBP3P10745 1247 aa10.42□□□□□ -0.74
VPS53-202ENST00000389040 TACR2P21452 398 aa10.42□□□□□ -0.74
VPS53-202ENST00000389040 RPL22P35268 128 aaKnown RBP10.42□□□□□ -0.74
Retrieved 100 of 20,778 RNA–protein pairs in 21.2 ms