RNA–Protein interactions for RNA: ENST00000355477.10

CLN3-202, Transcript of CLN3, battenin, humanhuman

TSL 1 (best) BASIC

Gene CLN3, Length 1,173 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-202ENST00000355477 SLFN11Q7Z7L1 901 aa18.81■□□□□ 0.6
CLN3-202ENST00000355477 PIP4P1Q86T03 277 aa18.81■□□□□ 0.6
CLN3-202ENST00000355477 NLRP14Q86W24 1093 aa18.81■□□□□ 0.6
CLN3-202ENST00000355477 PYROXD2Q8N2H3 581 aa18.81■□□□□ 0.6
CLN3-202ENST00000355477 OR2A12Q8NGT7 310 aa18.81■□□□□ 0.6
CLN3-202ENST00000355477 OR2T34Q8NGX1 318 aa18.81■□□□□ 0.6
CLN3-202ENST00000355477 NTAN1Q96AB6 310 aa18.81■□□□□ 0.6
CLN3-202ENST00000355477 VCPIP1Q96JH7 1222 aa18.81■□□□□ 0.6
CLN3-202ENST00000355477 CNPY3Q9BT09 278 aa18.81■□□□□ 0.6
CLN3-202ENST00000355477 IL21RQ9HBE5 538 aa18.81■□□□□ 0.6
CLN3-202ENST00000355477 TM9SF3Q9HD45 589 aa18.81■□□□□ 0.6
CLN3-202ENST00000355477 DNAI1Q9UI46 699 aa18.81■□□□□ 0.6
CLN3-202ENST00000355477 A0A1B0GVT2 93 aa18.8■□□□□ 0.6
CLN3-202ENST00000355477 UPK3BL1B0FP48 263 aa18.8■□□□□ 0.6
CLN3-202ENST00000355477 UPK3BL2E5RIL1 263 aa18.8■□□□□ 0.6
CLN3-202ENST00000355477 RNF103O00237 685 aa18.8■□□□□ 0.6
CLN3-202ENST00000355477 DDX3XO00571 662 aaKnown RBP eCLIP18.8■□□□□ 0.65e-8■■□□□ 12.6
CLN3-202ENST00000355477 ATMINO43313 823 aaPredicted RBP18.8■□□□□ 0.6
CLN3-202ENST00000355477 CEACAM1P13688 526 aa18.8■□□□□ 0.6
CLN3-202ENST00000355477 RHOQP17081 205 aa18.8■□□□□ 0.6
CLN3-202ENST00000355477 ACVRL1P37023 503 aa18.8■□□□□ 0.6
CLN3-202ENST00000355477 AFF3P51826 1226 aaKnown RBP18.8■□□□□ 0.6
CLN3-202ENST00000355477 ADPRHP54922 357 aa18.8■□□□□ 0.6
CLN3-202ENST00000355477 UBASH3AP57075 661 aa18.8■□□□□ 0.6
CLN3-202ENST00000355477 ARF5P84085 180 aa18.8■□□□□ 0.6
CLN3-202ENST00000355477 KLHL30Q0D2K2 578 aa18.8■□□□□ 0.6
CLN3-202ENST00000355477 SCAPQ12770 1279 aa18.8■□□□□ 0.6
CLN3-202ENST00000355477 FIGNQ5HY92 759 aa18.8■□□□□ 0.6
CLN3-202ENST00000355477 DCUN1D2Q6PH85 259 aa18.8■□□□□ 0.6
CLN3-202ENST00000355477 LAYNQ6UX15 382 aa18.8■□□□□ 0.6
CLN3-202ENST00000355477 DSG4Q86SJ6 1040 aa18.8■□□□□ 0.6
CLN3-202ENST00000355477 OR14C36Q8NHC7 312 aa18.8■□□□□ 0.6
CLN3-202ENST00000355477 PIP4K2CQ8TBX8 421 aa18.8■□□□□ 0.6
CLN3-202ENST00000355477 FAM131CQ96AQ9 280 aa18.8■□□□□ 0.6
CLN3-202ENST00000355477 ZDHHC5Q9C0B5 715 aa18.8■□□□□ 0.6
CLN3-202ENST00000355477 ATP13A1Q9HD20 1204 aa18.8■□□□□ 0.6
CLN3-202ENST00000355477 OSGEPQ9NPF4 335 aa18.8■□□□□ 0.6
CLN3-202ENST00000355477 TMEM248Q9NWD8 314 aa18.8■□□□□ 0.6
CLN3-202ENST00000355477 ACTL7AQ9Y615 435 aa18.8■□□□□ 0.6
CLN3-202ENST00000355477 AKAP13Q12802 2813 aa18.8■□□□□ 0.6
CLN3-202ENST00000355477 EPG5Q9HCE0 2579 aa18.8■□□□□ 0.6
CLN3-202ENST00000355477 MAP1BP46821 2468 aaKnown RBP18.79■□□□□ 0.6
CLN3-202ENST00000355477 ANKRD62A6NC57 917 aa18.79■□□□□ 0.6
CLN3-202ENST00000355477 LRRC72A6NJI9 287 aa18.79■□□□□ 0.6
CLN3-202ENST00000355477 ALOX15BO15296 676 aa18.79■□□□□ 0.6
CLN3-202ENST00000355477 RTN2O75298 545 aa18.79■□□□□ 0.6
CLN3-202ENST00000355477 ZNF821O75541 412 aaPredicted RBP18.79■□□□□ 0.6
CLN3-202ENST00000355477 CD160O95971 181 aa18.79■□□□□ 0.6
CLN3-202ENST00000355477 FTLP02792 175 aaPredicted RBP18.79■□□□□ 0.6
CLN3-202ENST00000355477 PTMSP20962 102 aa18.79■□□□□ 0.6
CLN3-202ENST00000355477 TPM4P67936 248 aa18.79■□□□□ 0.6
CLN3-202ENST00000355477 CNTN1Q12860 1018 aa18.79■□□□□ 0.6
CLN3-202ENST00000355477 KCNT1Q5JUK3 1230 aa18.79■□□□□ 0.6
CLN3-202ENST00000355477 PLEKHA7Q6IQ23 1121 aa18.79■□□□□ 0.6
CLN3-202ENST00000355477 CHST14Q8NCH0 376 aa18.79■□□□□ 0.6
CLN3-202ENST00000355477 ARHGEF2Q92974 986 aaKnown RBP18.79■□□□□ 0.6
CLN3-202ENST00000355477 TBC1D31Q96DN5 1066 aa18.79■□□□□ 0.6
CLN3-202ENST00000355477 ACE2Q9BYF1 805 aaPredicted RBP18.79■□□□□ 0.6
CLN3-202ENST00000355477 TNKS2Q9H2K2 1166 aa18.79■□□□□ 0.6
CLN3-202ENST00000355477 PARVAQ9NVD7 372 aa18.79■□□□□ 0.6
CLN3-202ENST00000355477 FZD10Q9ULW2 581 aa18.79■□□□□ 0.6
CLN3-202ENST00000355477 A0A1W2PPC4 97 aa18.78■□□□□ 0.6
CLN3-202ENST00000355477 GZMAP12544 262 aa18.78■□□□□ 0.6
CLN3-202ENST00000355477 L1CAMP32004 1257 aa18.78■□□□□ 0.6
CLN3-202ENST00000355477 CHRNA3P32297 505 aa18.78■□□□□ 0.6
CLN3-202ENST00000355477 SERPINH1P50454 418 aaKnown RBP18.78■□□□□ 0.6
CLN3-202ENST00000355477 CCR5P51681 352 aa18.78■□□□□ 0.6
CLN3-202ENST00000355477 CLCN6P51797 869 aa18.78■□□□□ 0.6
CLN3-202ENST00000355477 KIF19Q2TAC6 998 aa18.78■□□□□ 0.6
CLN3-202ENST00000355477 HLA-BQ31612 363 aa18.78■□□□□ 0.6
CLN3-202ENST00000355477 FAM46CQ5VWP2 391 aa18.78■□□□□ 0.6
CLN3-202ENST00000355477 C22orf39Q6P5X5 142 aa18.78■□□□□ 0.6
CLN3-202ENST00000355477 TMC6Q7Z403 805 aa18.78■□□□□ 0.6
CLN3-202ENST00000355477 CAMK1GQ96NX5 476 aa18.78■□□□□ 0.6
CLN3-202ENST00000355477 TRIM7Q9C029 511 aa18.78■□□□□ 0.6
CLN3-202ENST00000355477 RETREG1Q9H6L5 497 aa18.78■□□□□ 0.6
CLN3-202ENST00000355477 GAREM1Q9H706 876 aa18.78■□□□□ 0.6
CLN3-202ENST00000355477 ANKRD6Q9Y2G4 727 aa18.78■□□□□ 0.6
CLN3-202ENST00000355477 SNX11Q9Y5W9 270 aa18.78■□□□□ 0.6
CLN3-202ENST00000355477 TRPM6Q9BX84 2022 aa18.78■□□□□ 0.6
CLN3-202ENST00000355477 FRYQ5TBA9 3013 aa18.77■□□□□ 0.6
CLN3-202ENST00000355477 SPEGQ15772 3267 aa18.77■□□□□ 0.6
CLN3-202ENST00000355477 TBC1D3DA0A087WVF3 549 aa18.77■□□□□ 0.6
CLN3-202ENST00000355477 TBC1D3IA0A087WXS9 549 aa18.77■□□□□ 0.6
CLN3-202ENST00000355477 TBC1D3EA0A087X179 549 aa18.77■□□□□ 0.6
CLN3-202ENST00000355477 TBC1D3KA0A087X1G2 549 aa18.77■□□□□ 0.6
CLN3-202ENST00000355477 TBC1D3FA6NER0 549 aaPredicted RBP18.77■□□□□ 0.6
CLN3-202ENST00000355477 TBC1D3LB9A6J9 549 aa18.77■□□□□ 0.6
CLN3-202ENST00000355477 C1QTNF3-AMACRE9PGA6 284 aa18.77■□□□□ 0.6
CLN3-202ENST00000355477 GOLGA6L19H0YKK7 550 aa18.77■□□□□ 0.6
CLN3-202ENST00000355477 KCNK3O14649 394 aa18.77■□□□□ 0.6
CLN3-202ENST00000355477 WNT9AO14904 365 aa18.77■□□□□ 0.6
CLN3-202ENST00000355477 SH3BP5O60239 455 aa18.77■□□□□ 0.6
CLN3-202ENST00000355477 TBC1D3HP0C7X1 549 aa18.77■□□□□ 0.6
CLN3-202ENST00000355477 PMLP29590 882 aa18.77■□□□□ 0.6
CLN3-202ENST00000355477 MAPKAPK2P49137 400 aa18.77■□□□□ 0.6
CLN3-202ENST00000355477 PPP2CBP62714 309 aa18.77■□□□□ 0.6
CLN3-202ENST00000355477 PPP2CAP67775 309 aa18.77■□□□□ 0.6
CLN3-202ENST00000355477 FAM193AP78312 1265 aa18.77■□□□□ 0.6
CLN3-202ENST00000355477 SLC20A2Q08357 652 aa18.77■□□□□ 0.6
Retrieved 100 of 20,778 RNA–protein pairs in 45.5 ms