RNA–Protein interactions for RNA: ENST00000348544.4

VPS39-202, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS39, Length 2,661 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-202ENST00000348544 ZNF182P17025 639 aaPredicted RBP6.91□□□□□ -1.3
VPS39-202ENST00000348544 PGAM1P18669 254 aa6.91□□□□□ -1.3
VPS39-202ENST00000348544 MYF6P23409 242 aa6.91□□□□□ -1.3
VPS39-202ENST00000348544 SLC7A1P30825 629 aa6.91□□□□□ -1.3
VPS39-202ENST00000348544 GP5P40197 560 aa6.91□□□□□ -1.3
VPS39-202ENST00000348544 MAPK10P53779 464 aa6.91□□□□□ -1.3
VPS39-202ENST00000348544 GNA12Q03113 381 aa6.91□□□□□ -1.3
VPS39-202ENST00000348544 FAM98CQ17RN3 349 aaKnown RBP6.91□□□□□ -1.3
VPS39-202ENST00000348544 ZNF699Q32M78 642 aa6.91□□□□□ -1.3
VPS39-202ENST00000348544 BSPRYQ5W0U4 402 aa6.91□□□□□ -1.3
VPS39-202ENST00000348544 SNRNP48Q6IEG0 339 aaKnown RBP6.91□□□□□ -1.3
VPS39-202ENST00000348544 SCYL2Q6P3W7 929 aa6.91□□□□□ -1.3
VPS39-202ENST00000348544 TTC33Q6PID6 262 aaPredicted RBP6.91□□□□□ -1.3
VPS39-202ENST00000348544 ZBTB33Q86T24 672 aa6.91□□□□□ -1.3
VPS39-202ENST00000348544 CDKL3Q8IVW4 592 aaPredicted RBP6.91□□□□□ -1.3
VPS39-202ENST00000348544 LSMEM2Q8N112 164 aa6.91□□□□□ -1.3
VPS39-202ENST00000348544 TMEM151AQ8N4L1 468 aa6.91□□□□□ -1.3
VPS39-202ENST00000348544 ANKFN1Q8N957 763 aa6.91□□□□□ -1.3
VPS39-202ENST00000348544 SCAIQ8N9R8 606 aa6.91□□□□□ -1.3
VPS39-202ENST00000348544 ZNF420Q8TAQ5 688 aaPredicted RBP6.91□□□□□ -1.3
VPS39-202ENST00000348544 DCPSQ96C86 337 aaKnown RBP6.91□□□□□ -1.3
VPS39-202ENST00000348544 DUS3LQ96G46 650 aaKnown RBP6.91□□□□□ -1.3
VPS39-202ENST00000348544 AGAP3Q96P47 875 aa6.91□□□□□ -1.3
VPS39-202ENST00000348544 RBBP8Q99708 897 aa6.91□□□□□ -1.3
VPS39-202ENST00000348544 SNRNP25Q9BV90 132 aaKnown RBP6.91□□□□□ -1.3
VPS39-202ENST00000348544 DRC3Q9H069 523 aa6.91□□□□□ -1.3
VPS39-202ENST00000348544 NXF1Q9UBU9 619 aaKnown RBP6.91□□□□□ -1.3
VPS39-202ENST00000348544 GNPTGQ9UJJ9 305 aa6.91□□□□□ -1.3
VPS39-202ENST00000348544 FEM1BQ9UK73 627 aa6.91□□□□□ -1.3
VPS39-202ENST00000348544 PTBP2Q9UKA9 531 aaKnown RBP6.91□□□□□ -1.3
VPS39-202ENST00000348544 ERGIC3Q9Y282 383 aa6.91□□□□□ -1.3
VPS39-202ENST00000348544 MYO18AQ92614 2054 aaKnown RBP6.9□□□□□ -1.3
VPS39-202ENST00000348544 A0A096LPK6 155 aa6.9□□□□□ -1.3
VPS39-202ENST00000348544 KRBA1A5PL33 1030 aa6.9□□□□□ -1.3
VPS39-202ENST00000348544 ZNF839A8K0R7 811 aa6.9□□□□□ -1.3
VPS39-202ENST00000348544 AQP9O43315 295 aa6.9□□□□□ -1.3
VPS39-202ENST00000348544 CYP2F1P24903 491 aa6.9□□□□□ -1.3
VPS39-202ENST00000348544 NFKBIAP25963 317 aa6.9□□□□□ -1.3
VPS39-202ENST00000348544 ADSLP30566 484 aaPredicted RBP6.9□□□□□ -1.3
VPS39-202ENST00000348544 GPD2P43304 727 aa6.9□□□□□ -1.3
VPS39-202ENST00000348544 GRIA4P48058 902 aa6.9□□□□□ -1.3
VPS39-202ENST00000348544 NFATC3Q12968 1075 aa6.9□□□□□ -1.3
VPS39-202ENST00000348544 NAB1Q13506 487 aa6.9□□□□□ -1.3
VPS39-202ENST00000348544 TRPC3Q13507 836 aa6.9□□□□□ -1.3
VPS39-202ENST00000348544 OLIG2Q13516 323 aa6.9□□□□□ -1.3
VPS39-202ENST00000348544 CCDC14Q49A88 953 aa6.9□□□□□ -1.3
VPS39-202ENST00000348544 DACT2Q5SW24 774 aa6.9□□□□□ -1.3
VPS39-202ENST00000348544 FSTL4Q6MZW2 842 aa6.9□□□□□ -1.3
VPS39-202ENST00000348544 FAM183BPQ6ZVS7 135 aa6.9□□□□□ -1.3
VPS39-202ENST00000348544 BTLAQ7Z6A9 289 aa6.9□□□□□ -1.3
VPS39-202ENST00000348544 IGFN1Q86VF2 1251 aa6.9□□□□□ -1.3
VPS39-202ENST00000348544 ZC3H7AQ8IWR0 971 aaKnown RBP6.9□□□□□ -1.3
VPS39-202ENST00000348544 SLC7A5P1Q8MH63 180 aa6.9□□□□□ -1.3
VPS39-202ENST00000348544 CBR4Q8N4T8 237 aa6.9□□□□□ -1.3
VPS39-202ENST00000348544 RDM1Q8NG50 284 aa6.9□□□□□ -1.3
VPS39-202ENST00000348544 UBA3Q8TBC4 463 aa6.9□□□□□ -1.3
VPS39-202ENST00000348544 C17orf50Q8WW18 174 aa6.9□□□□□ -1.3
VPS39-202ENST00000348544 ATP6V0A1Q93050 837 aa6.9□□□□□ -1.3
VPS39-202ENST00000348544 FBXL20Q96IG2 436 aa6.9□□□□□ -1.3
VPS39-202ENST00000348544 RMDN3Q96TC7 470 aa6.9□□□□□ -1.3
VPS39-202ENST00000348544 AGAP2Q99490 1192 aa6.9□□□□□ -1.3
VPS39-202ENST00000348544 MRIQ9BWK5 157 aa6.9□□□□□ -1.3
VPS39-202ENST00000348544 ELOVL4Q9GZR5 314 aa6.9□□□□□ -1.3
VPS39-202ENST00000348544 POLR1BQ9H9Y6 1135 aa6.9□□□□□ -1.3
VPS39-202ENST00000348544 RAVER2Q9HCJ3 691 aaKnown RBP6.9□□□□□ -1.3
VPS39-202ENST00000348544 PALMDQ9NP74 551 aa6.9□□□□□ -1.3
VPS39-202ENST00000348544 PXMP2Q9NR77 195 aa6.9□□□□□ -1.3
VPS39-202ENST00000348544 HESX1Q9UBX0 185 aa6.9□□□□□ -1.3
VPS39-202ENST00000348544 CDYLQ9Y232 598 aa6.9□□□□□ -1.3
VPS39-202ENST00000348544 TSC22D4Q9Y3Q8 395 aa6.9□□□□□ -1.3
VPS39-202ENST00000348544 GPC6Q9Y625 555 aaPredicted RBP6.9□□□□□ -1.3
VPS39-202ENST00000348544 ZNF646O15015 1829 aaPredicted RBP6.9□□□□□ -1.3
VPS39-202ENST00000348544 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP6.9□□□□□ -1.31
VPS39-202ENST00000348544 KLRG2A4D1S0 409 aaPredicted RBP6.9□□□□□ -1.31
VPS39-202ENST00000348544 KPNA7A9QM74 516 aa6.9□□□□□ -1.31
VPS39-202ENST00000348544 M0QYV0 167 aa6.9□□□□□ -1.31
VPS39-202ENST00000348544 PAPSS1O43252 624 aaPredicted RBP6.9□□□□□ -1.31
VPS39-202ENST00000348544 CLASP2O75122 1294 aaKnown RBP6.9□□□□□ -1.31
VPS39-202ENST00000348544 HSPA1AP0DMV8 641 aaKnown RBP6.9□□□□□ -1.31
VPS39-202ENST00000348544 HSPA1BP0DMV9 641 aaKnown RBP6.9□□□□□ -1.31
VPS39-202ENST00000348544 BMP2P12643 396 aa6.9□□□□□ -1.31
VPS39-202ENST00000348544 KCNA2P16389 499 aa6.9□□□□□ -1.31
VPS39-202ENST00000348544 TFE3P19532 575 aaPredicted RBP6.9□□□□□ -1.31
VPS39-202ENST00000348544 CYP3A5P20815 502 aa6.9□□□□□ -1.31
VPS39-202ENST00000348544 ATP6V1B2P21281 511 aa6.9□□□□□ -1.31
VPS39-202ENST00000348544 POLR2IP36954 125 aaKnown RBP6.9□□□□□ -1.31
VPS39-202ENST00000348544 LIMK2P53671 638 aa6.9□□□□□ -1.31
VPS39-202ENST00000348544 TFAMQ00059 246 aaKnown RBP6.9□□□□□ -1.31
VPS39-202ENST00000348544 TRAF2Q12933 501 aa6.9□□□□□ -1.31
VPS39-202ENST00000348544 ITGADQ13349 1161 aa6.9□□□□□ -1.31
VPS39-202ENST00000348544 LRP8Q14114 963 aa6.9□□□□□ -1.31
VPS39-202ENST00000348544 RGS21Q2M5E4 152 aa6.9□□□□□ -1.31
VPS39-202ENST00000348544 GLRA4Q5JXX5 417 aa6.9□□□□□ -1.31
VPS39-202ENST00000348544 FAM182BQ5T319 152 aa6.9□□□□□ -1.31
VPS39-202ENST00000348544 FAM117BQ6P1L5 589 aa6.9□□□□□ -1.31
VPS39-202ENST00000348544 GALNT18Q6P9A2 607 aa6.9□□□□□ -1.31
VPS39-202ENST00000348544 CHST15Q7LFX5 561 aaPredicted RBP6.9□□□□□ -1.31
VPS39-202ENST00000348544 TMEM110Q86TL2 294 aa6.9□□□□□ -1.31
VPS39-202ENST00000348544 CDAN1Q8IWY9 1227 aa6.9□□□□□ -1.31
VPS39-202ENST00000348544 ARL10Q8N8L6 244 aa6.9□□□□□ -1.31
Retrieved 100 of 20,778 RNA–protein pairs in 31.2 ms